Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G20790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
2GO:1905177: tracheary element differentiation0.00E+00
3GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
6GO:0070125: mitochondrial translational elongation0.00E+00
7GO:1905421: regulation of plant organ morphogenesis0.00E+00
8GO:0010081: regulation of inflorescence meristem growth0.00E+00
9GO:0030155: regulation of cell adhesion0.00E+00
10GO:0019323: pentose catabolic process0.00E+00
11GO:0090706: specification of plant organ position0.00E+00
12GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
13GO:0017038: protein import0.00E+00
14GO:0007638: mechanosensory behavior0.00E+00
15GO:1902326: positive regulation of chlorophyll biosynthetic process3.96E-06
16GO:0040008: regulation of growth2.87E-05
17GO:2001141: regulation of RNA biosynthetic process3.17E-05
18GO:0010027: thylakoid membrane organization5.47E-05
19GO:0009765: photosynthesis, light harvesting5.68E-05
20GO:0010207: photosystem II assembly6.35E-05
21GO:0015995: chlorophyll biosynthetic process7.45E-05
22GO:0010236: plastoquinone biosynthetic process8.98E-05
23GO:0045038: protein import into chloroplast thylakoid membrane8.98E-05
24GO:0016123: xanthophyll biosynthetic process8.98E-05
25GO:0010375: stomatal complex patterning8.98E-05
26GO:0016117: carotenoid biosynthetic process2.29E-04
27GO:0006605: protein targeting2.94E-04
28GO:0043266: regulation of potassium ion transport2.94E-04
29GO:0010063: positive regulation of trichoblast fate specification2.94E-04
30GO:0010080: regulation of floral meristem growth2.94E-04
31GO:2000021: regulation of ion homeostasis2.94E-04
32GO:0051247: positive regulation of protein metabolic process2.94E-04
33GO:1902458: positive regulation of stomatal opening2.94E-04
34GO:2000905: negative regulation of starch metabolic process2.94E-04
35GO:0010450: inflorescence meristem growth2.94E-04
36GO:0006419: alanyl-tRNA aminoacylation2.94E-04
37GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.94E-04
38GO:0070509: calcium ion import2.94E-04
39GO:0044262: cellular carbohydrate metabolic process2.94E-04
40GO:0009664: plant-type cell wall organization3.14E-04
41GO:0071482: cellular response to light stimulus3.62E-04
42GO:0009828: plant-type cell wall loosening4.82E-04
43GO:0009733: response to auxin5.93E-04
44GO:1901959: positive regulation of cutin biosynthetic process6.45E-04
45GO:0009786: regulation of asymmetric cell division6.45E-04
46GO:1903426: regulation of reactive oxygen species biosynthetic process6.45E-04
47GO:2000123: positive regulation of stomatal complex development6.45E-04
48GO:0010275: NAD(P)H dehydrogenase complex assembly6.45E-04
49GO:0060359: response to ammonium ion6.45E-04
50GO:0048255: mRNA stabilization6.45E-04
51GO:0006352: DNA-templated transcription, initiation6.94E-04
52GO:0007275: multicellular organism development7.68E-04
53GO:0018298: protein-chromophore linkage8.44E-04
54GO:2000012: regulation of auxin polar transport8.98E-04
55GO:0010022: meristem determinacy1.04E-03
56GO:0010623: programmed cell death involved in cell development1.04E-03
57GO:0080055: low-affinity nitrate transport1.04E-03
58GO:1904278: positive regulation of wax biosynthetic process1.04E-03
59GO:0006696: ergosterol biosynthetic process1.04E-03
60GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.04E-03
61GO:0043157: response to cation stress1.04E-03
62GO:0072661: protein targeting to plasma membrane1.04E-03
63GO:0045165: cell fate commitment1.04E-03
64GO:0048281: inflorescence morphogenesis1.04E-03
65GO:1902448: positive regulation of shade avoidance1.04E-03
66GO:0048586: regulation of long-day photoperiodism, flowering1.04E-03
67GO:0015979: photosynthesis1.05E-03
68GO:0070588: calcium ion transmembrane transport1.13E-03
69GO:0045490: pectin catabolic process1.39E-03
70GO:0009944: polarity specification of adaxial/abaxial axis1.39E-03
71GO:0031048: chromatin silencing by small RNA1.50E-03
72GO:0010148: transpiration1.50E-03
73GO:0016556: mRNA modification1.50E-03
74GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.50E-03
75GO:0010071: root meristem specification1.50E-03
76GO:0007231: osmosensory signaling pathway1.50E-03
77GO:0051639: actin filament network formation1.50E-03
78GO:0009052: pentose-phosphate shunt, non-oxidative branch1.50E-03
79GO:0019048: modulation by virus of host morphology or physiology1.50E-03
80GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.50E-03
81GO:0046739: transport of virus in multicellular host1.50E-03
82GO:0007017: microtubule-based process1.53E-03
83GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.00E-03
84GO:0051567: histone H3-K9 methylation2.01E-03
85GO:0010508: positive regulation of autophagy2.01E-03
86GO:0008295: spermidine biosynthetic process2.01E-03
87GO:0010109: regulation of photosynthesis2.01E-03
88GO:0051764: actin crosslink formation2.01E-03
89GO:0006661: phosphatidylinositol biosynthetic process2.01E-03
90GO:2000306: positive regulation of photomorphogenesis2.01E-03
91GO:0006109: regulation of carbohydrate metabolic process2.01E-03
92GO:2000122: negative regulation of stomatal complex development2.01E-03
93GO:0033500: carbohydrate homeostasis2.01E-03
94GO:0022622: root system development2.01E-03
95GO:2000038: regulation of stomatal complex development2.01E-03
96GO:0045723: positive regulation of fatty acid biosynthetic process2.01E-03
97GO:0016120: carotene biosynthetic process2.56E-03
98GO:1902183: regulation of shoot apical meristem development2.56E-03
99GO:0010158: abaxial cell fate specification2.56E-03
100GO:0000304: response to singlet oxygen2.56E-03
101GO:0009826: unidimensional cell growth2.56E-03
102GO:0009658: chloroplast organization2.71E-03
103GO:0010305: leaf vascular tissue pattern formation2.74E-03
104GO:0009734: auxin-activated signaling pathway3.02E-03
105GO:0032973: amino acid export3.16E-03
106GO:0016458: gene silencing3.16E-03
107GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.16E-03
108GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.16E-03
109GO:0009959: negative gravitropism3.16E-03
110GO:0006655: phosphatidylglycerol biosynthetic process3.16E-03
111GO:0016554: cytidine to uridine editing3.16E-03
112GO:0032502: developmental process3.61E-03
113GO:0080086: stamen filament development3.81E-03
114GO:0042372: phylloquinone biosynthetic process3.81E-03
115GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.97E-03
116GO:0007267: cell-cell signaling4.35E-03
117GO:0010444: guard mother cell differentiation4.49E-03
118GO:0006400: tRNA modification4.49E-03
119GO:0030307: positive regulation of cell growth4.49E-03
120GO:0010103: stomatal complex morphogenesis4.49E-03
121GO:0032880: regulation of protein localization4.49E-03
122GO:0010374: stomatal complex development4.49E-03
123GO:0048528: post-embryonic root development4.49E-03
124GO:0043090: amino acid import4.49E-03
125GO:0070370: cellular heat acclimation4.49E-03
126GO:0048437: floral organ development4.49E-03
127GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.49E-03
128GO:0042255: ribosome assembly5.21E-03
129GO:0046620: regulation of organ growth5.21E-03
130GO:0006353: DNA-templated transcription, termination5.21E-03
131GO:2000070: regulation of response to water deprivation5.21E-03
132GO:0007155: cell adhesion5.21E-03
133GO:0048564: photosystem I assembly5.21E-03
134GO:0010497: plasmodesmata-mediated intercellular transport5.98E-03
135GO:0009657: plastid organization5.98E-03
136GO:0032544: plastid translation5.98E-03
137GO:0010093: specification of floral organ identity5.98E-03
138GO:0015996: chlorophyll catabolic process5.98E-03
139GO:0001558: regulation of cell growth5.98E-03
140GO:0010052: guard cell differentiation5.98E-03
141GO:0007186: G-protein coupled receptor signaling pathway5.98E-03
142GO:0048507: meristem development6.77E-03
143GO:0000373: Group II intron splicing6.77E-03
144GO:0000902: cell morphogenesis6.77E-03
145GO:0009051: pentose-phosphate shunt, oxidative branch6.77E-03
146GO:0080144: amino acid homeostasis6.77E-03
147GO:2000024: regulation of leaf development6.77E-03
148GO:0046916: cellular transition metal ion homeostasis6.77E-03
149GO:0055085: transmembrane transport6.87E-03
150GO:0006779: porphyrin-containing compound biosynthetic process7.60E-03
151GO:1900865: chloroplast RNA modification7.60E-03
152GO:0030422: production of siRNA involved in RNA interference8.48E-03
153GO:0048829: root cap development8.48E-03
154GO:0009641: shade avoidance8.48E-03
155GO:0006949: syncytium formation8.48E-03
156GO:0009299: mRNA transcription8.48E-03
157GO:0006782: protoporphyrinogen IX biosynthetic process8.48E-03
158GO:0006839: mitochondrial transport9.22E-03
159GO:0006415: translational termination9.38E-03
160GO:0019684: photosynthesis, light reaction9.38E-03
161GO:0006816: calcium ion transport9.38E-03
162GO:0009089: lysine biosynthetic process via diaminopimelate9.38E-03
163GO:0043085: positive regulation of catalytic activity9.38E-03
164GO:0045037: protein import into chloroplast stroma1.03E-02
165GO:0010582: floral meristem determinacy1.03E-02
166GO:0016024: CDP-diacylglycerol biosynthetic process1.03E-02
167GO:0005975: carbohydrate metabolic process1.11E-02
168GO:0050826: response to freezing1.13E-02
169GO:0009718: anthocyanin-containing compound biosynthetic process1.13E-02
170GO:0009725: response to hormone1.13E-02
171GO:0009933: meristem structural organization1.23E-02
172GO:0009887: animal organ morphogenesis1.23E-02
173GO:0010030: positive regulation of seed germination1.33E-02
174GO:0051017: actin filament bundle assembly1.55E-02
175GO:0007010: cytoskeleton organization1.55E-02
176GO:0051302: regulation of cell division1.66E-02
177GO:0008299: isoprenoid biosynthetic process1.66E-02
178GO:0048511: rhythmic process1.78E-02
179GO:0010431: seed maturation1.78E-02
180GO:0031408: oxylipin biosynthetic process1.78E-02
181GO:0006306: DNA methylation1.78E-02
182GO:0009740: gibberellic acid mediated signaling pathway1.89E-02
183GO:0006730: one-carbon metabolic process1.90E-02
184GO:0030245: cellulose catabolic process1.90E-02
185GO:0001944: vasculature development2.02E-02
186GO:0009742: brassinosteroid mediated signaling pathway2.13E-02
187GO:0042127: regulation of cell proliferation2.14E-02
188GO:0019722: calcium-mediated signaling2.14E-02
189GO:0009561: megagametogenesis2.14E-02
190GO:0009306: protein secretion2.14E-02
191GO:0010089: xylem development2.14E-02
192GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.27E-02
193GO:0008284: positive regulation of cell proliferation2.27E-02
194GO:0008033: tRNA processing2.40E-02
195GO:0000413: protein peptidyl-prolyl isomerization2.40E-02
196GO:0010118: stomatal movement2.40E-02
197GO:0042631: cellular response to water deprivation2.40E-02
198GO:0010154: fruit development2.53E-02
199GO:0006662: glycerol ether metabolic process2.53E-02
200GO:0010182: sugar mediated signaling pathway2.53E-02
201GO:0006342: chromatin silencing2.53E-02
202GO:0009958: positive gravitropism2.53E-02
203GO:0009409: response to cold2.58E-02
204GO:0042752: regulation of circadian rhythm2.66E-02
205GO:0009646: response to absence of light2.66E-02
206GO:0008654: phospholipid biosynthetic process2.80E-02
207GO:0009630: gravitropism3.08E-02
208GO:0016032: viral process3.08E-02
209GO:0010090: trichome morphogenesis3.22E-02
210GO:0051607: defense response to virus3.66E-02
211GO:0010029: regulation of seed germination3.97E-02
212GO:0009816: defense response to bacterium, incompatible interaction3.97E-02
213GO:0007166: cell surface receptor signaling pathway3.97E-02
214GO:0009627: systemic acquired resistance4.13E-02
215GO:0048481: plant ovule development4.61E-02
216GO:0010311: lateral root formation4.77E-02
217GO:0006499: N-terminal protein myristoylation4.94E-02
218GO:0009407: toxin catabolic process4.94E-02
RankGO TermAdjusted P value
1GO:0045435: lycopene epsilon cyclase activity0.00E+00
2GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
3GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0010355: homogentisate farnesyltransferase activity0.00E+00
6GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
7GO:0005048: signal sequence binding0.00E+00
8GO:0010356: homogentisate geranylgeranyltransferase activity0.00E+00
9GO:0010357: homogentisate solanesyltransferase activity0.00E+00
10GO:0030570: pectate lyase activity8.57E-06
11GO:0031072: heat shock protein binding5.23E-05
12GO:0043495: protein anchor5.68E-05
13GO:0001053: plastid sigma factor activity5.68E-05
14GO:0016987: sigma factor activity5.68E-05
15GO:0019199: transmembrane receptor protein kinase activity5.68E-05
16GO:0019899: enzyme binding2.33E-04
17GO:0051996: squalene synthase activity2.94E-04
18GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity2.94E-04
19GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.94E-04
20GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity2.94E-04
21GO:0004813: alanine-tRNA ligase activity2.94E-04
22GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.45E-04
23GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.45E-04
24GO:0043425: bHLH transcription factor binding6.45E-04
25GO:0004766: spermidine synthase activity6.45E-04
26GO:0004750: ribulose-phosphate 3-epimerase activity6.45E-04
27GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.45E-04
28GO:0005262: calcium channel activity8.98E-04
29GO:0016829: lyase activity9.67E-04
30GO:0016805: dipeptidase activity1.04E-03
31GO:0070402: NADPH binding1.04E-03
32GO:0080054: low-affinity nitrate transmembrane transporter activity1.04E-03
33GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups1.04E-03
34GO:0015462: ATPase-coupled protein transmembrane transporter activity1.04E-03
35GO:0004180: carboxypeptidase activity1.04E-03
36GO:0003913: DNA photolyase activity1.04E-03
37GO:0005528: FK506 binding1.39E-03
38GO:0035197: siRNA binding1.50E-03
39GO:0016851: magnesium chelatase activity1.50E-03
40GO:0017057: 6-phosphogluconolactonase activity1.50E-03
41GO:0001872: (1->3)-beta-D-glucan binding1.50E-03
42GO:0016149: translation release factor activity, codon specific1.50E-03
43GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.89E-03
44GO:0022891: substrate-specific transmembrane transporter activity2.00E-03
45GO:0042277: peptide binding2.01E-03
46GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.01E-03
47GO:0016208: AMP binding3.16E-03
48GO:0004462: lactoylglutathione lyase activity3.16E-03
49GO:0051082: unfolded protein binding3.56E-03
50GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.81E-03
51GO:0005200: structural constituent of cytoskeleton4.35E-03
52GO:0009881: photoreceptor activity4.49E-03
53GO:0016597: amino acid binding4.61E-03
54GO:0016168: chlorophyll binding5.16E-03
55GO:0008312: 7S RNA binding5.21E-03
56GO:0046914: transition metal ion binding5.98E-03
57GO:0003747: translation release factor activity6.77E-03
58GO:0003924: GTPase activity6.81E-03
59GO:0030955: potassium ion binding7.60E-03
60GO:0004743: pyruvate kinase activity7.60E-03
61GO:0008047: enzyme activator activity8.48E-03
62GO:0046983: protein dimerization activity8.64E-03
63GO:0046872: metal ion binding9.09E-03
64GO:0004161: dimethylallyltranstransferase activity9.38E-03
65GO:0000049: tRNA binding1.03E-02
66GO:0004521: endoribonuclease activity1.03E-02
67GO:0000976: transcription regulatory region sequence-specific DNA binding1.03E-02
68GO:0004565: beta-galactosidase activity1.13E-02
69GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.23E-02
70GO:0008266: poly(U) RNA binding1.23E-02
71GO:0008083: growth factor activity1.23E-02
72GO:0008146: sulfotransferase activity1.33E-02
73GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.41E-02
74GO:0005515: protein binding1.45E-02
75GO:0003690: double-stranded DNA binding1.46E-02
76GO:0004857: enzyme inhibitor activity1.55E-02
77GO:0043424: protein histidine kinase binding1.66E-02
78GO:0008810: cellulase activity2.02E-02
79GO:0003727: single-stranded RNA binding2.14E-02
80GO:0003756: protein disulfide isomerase activity2.14E-02
81GO:0047134: protein-disulfide reductase activity2.27E-02
82GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.45E-02
83GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.59E-02
84GO:0004791: thioredoxin-disulfide reductase activity2.66E-02
85GO:0016853: isomerase activity2.66E-02
86GO:0019901: protein kinase binding2.80E-02
87GO:0004519: endonuclease activity2.97E-02
88GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.22E-02
89GO:0051015: actin filament binding3.22E-02
90GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.24E-02
91GO:0005525: GTP binding3.39E-02
92GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.51E-02
93GO:0008483: transaminase activity3.51E-02
94GO:0005509: calcium ion binding4.07E-02
95GO:0030247: polysaccharide binding4.29E-02
96GO:0042802: identical protein binding4.41E-02
97GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.61E-02
98GO:0004222: metalloendopeptidase activity4.94E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast7.85E-20
2GO:0009570: chloroplast stroma1.29E-11
3GO:0009535: chloroplast thylakoid membrane1.88E-09
4GO:0009941: chloroplast envelope1.95E-06
5GO:0009579: thylakoid2.44E-06
6GO:0009534: chloroplast thylakoid2.55E-06
7GO:0031969: chloroplast membrane2.27E-05
8GO:0010319: stromule4.35E-05
9GO:0042651: thylakoid membrane1.22E-04
10GO:0009543: chloroplast thylakoid lumen1.34E-04
11GO:0005886: plasma membrane1.70E-04
12GO:0080085: signal recognition particle, chloroplast targeting6.45E-04
13GO:0009508: plastid chromosome8.98E-04
14GO:0030139: endocytic vesicle1.04E-03
15GO:0009528: plastid inner membrane1.04E-03
16GO:0019897: extrinsic component of plasma membrane1.04E-03
17GO:0010007: magnesium chelatase complex1.04E-03
18GO:0031977: thylakoid lumen1.40E-03
19GO:0005719: nuclear euchromatin1.50E-03
20GO:0015630: microtubule cytoskeleton1.50E-03
21GO:0032585: multivesicular body membrane1.50E-03
22GO:0032432: actin filament bundle1.50E-03
23GO:0009654: photosystem II oxygen evolving complex1.53E-03
24GO:0030663: COPI-coated vesicle membrane2.01E-03
25GO:0009527: plastid outer membrane2.01E-03
26GO:0031225: anchored component of membrane2.93E-03
27GO:0009523: photosystem II3.16E-03
28GO:0019898: extrinsic component of membrane3.16E-03
29GO:0009295: nucleoid4.35E-03
30GO:0009986: cell surface4.49E-03
31GO:0009533: chloroplast stromal thylakoid4.49E-03
32GO:0030529: intracellular ribonucleoprotein complex4.88E-03
33GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.98E-03
34GO:0045298: tubulin complex6.77E-03
35GO:0015030: Cajal body7.60E-03
36GO:0030125: clathrin vesicle coat8.48E-03
37GO:0005884: actin filament9.38E-03
38GO:0046658: anchored component of plasma membrane1.02E-02
39GO:0000311: plastid large ribosomal subunit1.03E-02
40GO:0005578: proteinaceous extracellular matrix1.13E-02
41GO:0043234: protein complex1.44E-02
42GO:0005874: microtubule1.57E-02
43GO:0009532: plastid stroma1.78E-02
44GO:0009505: plant-type cell wall2.27E-02
45GO:0010287: plastoglobule2.39E-02
46GO:0048046: apoplast2.39E-02
47GO:0005618: cell wall2.85E-02
48GO:0005778: peroxisomal membrane3.51E-02
49GO:0009707: chloroplast outer membrane4.61E-02
50GO:0005576: extracellular region4.68E-02
<
Gene type



Gene DE type