co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G20260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006907: pinocytosis	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0042352: GDP-L-fucose salvage	0.00E+00
4	GO:0000819: sister chromatid segregation	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
7	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
8	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
9	GO:0010583: response to cyclopentenone	1.38E-04
10	GO:0048497: maintenance of floral organ identity	2.19E-04
11	GO:0030488: tRNA methylation	4.12E-04
12	GO:0042759: long-chain fatty acid biosynthetic process	5.09E-04
13	GO:0015904: tetracycline transport	5.09E-04
14	GO:0010726: positive regulation of hydrogen peroxide metabolic process	5.09E-04
15	GO:0006438: valyl-tRNA aminoacylation	5.09E-04
16	GO:0070509: calcium ion import	5.09E-04
17	GO:0010480: microsporocyte differentiation	5.09E-04
18	GO:0006426: glycyl-tRNA aminoacylation	5.09E-04
19	GO:0046620: regulation of organ growth	6.59E-04
20	GO:0009786: regulation of asymmetric cell division	1.10E-03
21	GO:0031648: protein destabilization	1.10E-03
22	GO:2000123: positive regulation of stomatal complex development	1.10E-03
23	GO:1901529: positive regulation of anion channel activity	1.10E-03
24	GO:0018026: peptidyl-lysine monomethylation	1.10E-03
25	GO:0006782: protoporphyrinogen IX biosynthetic process	1.32E-03
26	GO:0048229: gametophyte development	1.52E-03
27	GO:0000910: cytokinesis	1.56E-03
28	GO:0045910: negative regulation of DNA recombination	1.79E-03
29	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.79E-03
30	GO:0016042: lipid catabolic process	1.89E-03
31	GO:0015995: chlorophyll biosynthetic process	2.06E-03
32	GO:0010020: chloroplast fission	2.24E-03
33	GO:0070588: calcium ion transmembrane transport	2.51E-03
34	GO:0009558: embryo sac cellularization	2.60E-03
35	GO:0010321: regulation of vegetative phase change	2.60E-03
36	GO:0051513: regulation of monopolar cell growth	2.60E-03
37	GO:0007231: osmosensory signaling pathway	2.60E-03
38	GO:0007276: gamete generation	2.60E-03
39	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.60E-03
40	GO:0009647: skotomorphogenesis	2.60E-03
41	GO:0010088: phloem development	2.60E-03
42	GO:0006808: regulation of nitrogen utilization	3.50E-03
43	GO:0009765: photosynthesis, light harvesting	3.50E-03
44	GO:0033500: carbohydrate homeostasis	3.50E-03
45	GO:2000038: regulation of stomatal complex development	3.50E-03
46	GO:0042991: transcription factor import into nucleus	3.50E-03
47	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.76E-03
48	GO:0009793: embryo development ending in seed dormancy	4.00E-03
49	GO:0007094: mitotic spindle assembly checkpoint	4.49E-03
50	GO:0016123: xanthophyll biosynthetic process	4.49E-03
51	GO:0010375: stomatal complex patterning	4.49E-03
52	GO:0016120: carotene biosynthetic process	4.49E-03
53	GO:0045487: gibberellin catabolic process	4.49E-03
54	GO:0040008: regulation of growth	4.55E-03
55	GO:0042127: regulation of cell proliferation	4.90E-03
56	GO:0010942: positive regulation of cell death	5.56E-03
57	GO:0010405: arabinogalactan protein metabolic process	5.56E-03
58	GO:0016554: cytidine to uridine editing	5.56E-03
59	GO:0009913: epidermal cell differentiation	5.56E-03
60	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.56E-03
61	GO:1902456: regulation of stomatal opening	5.56E-03
62	GO:0042793: transcription from plastid promoter	5.56E-03
63	GO:0033365: protein localization to organelle	5.56E-03
64	GO:0006468: protein phosphorylation	5.95E-03
65	GO:0010182: sugar mediated signaling pathway	6.20E-03
66	GO:0009741: response to brassinosteroid	6.20E-03
67	GO:0009736: cytokinin-activated signaling pathway	6.46E-03
68	GO:0007018: microtubule-based movement	6.67E-03
69	GO:2000033: regulation of seed dormancy process	6.71E-03
70	GO:0009082: branched-chain amino acid biosynthetic process	6.71E-03
71	GO:0009099: valine biosynthetic process	6.71E-03
72	GO:0048825: cotyledon development	7.16E-03
73	GO:0048364: root development	7.57E-03
74	GO:0071554: cell wall organization or biogenesis	7.67E-03
75	GO:0000712: resolution of meiotic recombination intermediates	7.95E-03
76	GO:0045995: regulation of embryonic development	7.95E-03
77	GO:0048528: post-embryonic root development	7.95E-03
78	GO:1900056: negative regulation of leaf senescence	7.95E-03
79	GO:0030497: fatty acid elongation	7.95E-03
80	GO:0048437: floral organ development	7.95E-03
81	GO:0000082: G1/S transition of mitotic cell cycle	7.95E-03
82	GO:0010444: guard mother cell differentiation	7.95E-03
83	GO:0010492: maintenance of shoot apical meristem identity	9.25E-03
84	GO:0000105: histidine biosynthetic process	9.25E-03
85	GO:0001522: pseudouridine synthesis	9.25E-03
86	GO:0009097: isoleucine biosynthetic process	1.06E-02
87	GO:0010027: thylakoid membrane organization	1.11E-02
88	GO:0006351: transcription, DNA-templated	1.13E-02
89	GO:0009733: response to auxin	1.16E-02
90	GO:0051865: protein autoubiquitination	1.21E-02
91	GO:0009734: auxin-activated signaling pathway	1.28E-02
92	GO:0009638: phototropism	1.36E-02
93	GO:0006779: porphyrin-containing compound biosynthetic process	1.36E-02
94	GO:1900865: chloroplast RNA modification	1.36E-02
95	GO:0007346: regulation of mitotic cell cycle	1.36E-02
96	GO:0048829: root cap development	1.52E-02
97	GO:0009641: shade avoidance	1.52E-02
98	GO:0006298: mismatch repair	1.52E-02
99	GO:0006949: syncytium formation	1.52E-02
100	GO:0006259: DNA metabolic process	1.52E-02
101	GO:0010162: seed dormancy process	1.52E-02
102	GO:0000160: phosphorelay signal transduction system	1.53E-02
103	GO:0010311: lateral root formation	1.53E-02
104	GO:0006816: calcium ion transport	1.68E-02
105	GO:0006265: DNA topological change	1.68E-02
106	GO:0009073: aromatic amino acid family biosynthetic process	1.68E-02
107	GO:0000266: mitochondrial fission	1.85E-02
108	GO:0006312: mitotic recombination	1.85E-02
109	GO:0012501: programmed cell death	1.85E-02
110	GO:0009416: response to light stimulus	1.90E-02
111	GO:0010075: regulation of meristem growth	2.03E-02
112	GO:0010588: cotyledon vascular tissue pattern formation	2.03E-02
113	GO:0010102: lateral root morphogenesis	2.03E-02
114	GO:0009785: blue light signaling pathway	2.03E-02
115	GO:0030048: actin filament-based movement	2.03E-02
116	GO:0010628: positive regulation of gene expression	2.03E-02
117	GO:0006631: fatty acid metabolic process	2.20E-02
118	GO:0009887: animal organ morphogenesis	2.21E-02
119	GO:0009934: regulation of meristem structural organization	2.21E-02
120	GO:0006302: double-strand break repair	2.21E-02
121	GO:0007034: vacuolar transport	2.21E-02
122	GO:0009926: auxin polar transport	2.39E-02
123	GO:0009640: photomorphogenesis	2.39E-02
124	GO:0090351: seedling development	2.40E-02
125	GO:0007166: cell surface receptor signaling pathway	2.41E-02
126	GO:0006833: water transport	2.59E-02
127	GO:0000162: tryptophan biosynthetic process	2.59E-02
128	GO:0010025: wax biosynthetic process	2.59E-02
129	GO:0080147: root hair cell development	2.79E-02
130	GO:0019953: sexual reproduction	2.99E-02
131	GO:0006418: tRNA aminoacylation for protein translation	2.99E-02
132	GO:0007017: microtubule-based process	2.99E-02
133	GO:0048511: rhythmic process	3.20E-02
134	GO:0051321: meiotic cell cycle	3.20E-02
135	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.42E-02
136	GO:0009686: gibberellin biosynthetic process	3.64E-02
137	GO:0010082: regulation of root meristem growth	3.64E-02
138	GO:0009294: DNA mediated transformation	3.64E-02
139	GO:0010091: trichome branching	3.86E-02
140	GO:0048367: shoot system development	3.93E-02
141	GO:0016117: carotenoid biosynthetic process	4.08E-02
142	GO:0034220: ion transmembrane transport	4.32E-02
143	GO:0010087: phloem or xylem histogenesis	4.32E-02
144	GO:0010118: stomatal movement	4.32E-02
145	GO:0048653: anther development	4.32E-02
146	GO:0080022: primary root development	4.32E-02
147	GO:0009958: positive gravitropism	4.55E-02
148	GO:0010305: leaf vascular tissue pattern formation	4.55E-02
149	GO:0009735: response to cytokinin	4.77E-02
150	GO:0042752: regulation of circadian rhythm	4.79E-02
151	GO:0007059: chromosome segregation	4.79E-02
152	GO:0009742: brassinosteroid mediated signaling pathway	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0015267: channel activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
5	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
6	GO:0050201: fucokinase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0071633: dihydroceramidase activity	0.00E+00
9	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
10	GO:0047661: amino-acid racemase activity	0.00E+00
11	GO:0004820: glycine-tRNA ligase activity	5.09E-04
12	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	5.09E-04
13	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	5.09E-04
14	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	5.09E-04
15	GO:0004160: dihydroxy-acid dehydratase activity	5.09E-04
16	GO:0009374: biotin binding	5.09E-04
17	GO:0004832: valine-tRNA ligase activity	5.09E-04
18	GO:0043621: protein self-association	8.83E-04
19	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.10E-03
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.10E-03
21	GO:0004109: coproporphyrinogen oxidase activity	1.10E-03
22	GO:0008493: tetracycline transporter activity	1.10E-03
23	GO:0016630: protochlorophyllide reductase activity	1.10E-03
24	GO:0070330: aromatase activity	1.79E-03
25	GO:0017150: tRNA dihydrouridine synthase activity	1.79E-03
26	GO:0005262: calcium channel activity	1.98E-03
27	GO:0001872: (1->3)-beta-D-glucan binding	2.60E-03
28	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.60E-03
29	GO:0003916: DNA topoisomerase activity	2.60E-03
30	GO:0005515: protein binding	3.26E-03
31	GO:0004335: galactokinase activity	3.50E-03
32	GO:0016279: protein-lysine N-methyltransferase activity	3.50E-03
33	GO:0016836: hydro-lyase activity	3.50E-03
34	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.50E-03
35	GO:0019199: transmembrane receptor protein kinase activity	3.50E-03
36	GO:0008408: 3'-5' exonuclease activity	3.77E-03
37	GO:0004176: ATP-dependent peptidase activity	3.77E-03
38	GO:0052689: carboxylic ester hydrolase activity	4.23E-03
39	GO:0003989: acetyl-CoA carboxylase activity	4.49E-03
40	GO:0018685: alkane 1-monooxygenase activity	4.49E-03
41	GO:0016887: ATPase activity	4.76E-03
42	GO:0008017: microtubule binding	5.23E-03
43	GO:0042803: protein homodimerization activity	5.28E-03
44	GO:0030983: mismatched DNA binding	5.56E-03
45	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.56E-03
46	GO:0004709: MAP kinase kinase kinase activity	5.56E-03
47	GO:0004674: protein serine/threonine kinase activity	6.48E-03
48	GO:0016853: isomerase activity	6.67E-03
49	GO:0016832: aldehyde-lyase activity	6.71E-03
50	GO:0051753: mannan synthase activity	6.71E-03
51	GO:0016298: lipase activity	6.76E-03
52	GO:0005524: ATP binding	7.06E-03
53	GO:0003777: microtubule motor activity	7.37E-03
54	GO:0009055: electron carrier activity	7.95E-03
55	GO:0004519: endonuclease activity	8.14E-03
56	GO:0000156: phosphorelay response regulator activity	8.75E-03
57	GO:0004650: polygalacturonase activity	9.04E-03
58	GO:0003779: actin binding	9.78E-03
59	GO:0016788: hydrolase activity, acting on ester bonds	9.78E-03
60	GO:0008237: metallopeptidase activity	9.91E-03
61	GO:0016413: O-acetyltransferase activity	1.05E-02
62	GO:0008173: RNA methyltransferase activity	1.06E-02
63	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.06E-02
64	GO:0004222: metalloendopeptidase activity	1.61E-02
65	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.68E-02
66	GO:0004871: signal transducer activity	1.85E-02
67	GO:0003697: single-stranded DNA binding	1.85E-02
68	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.87E-02
69	GO:0004722: protein serine/threonine phosphatase activity	1.98E-02
70	GO:0031072: heat shock protein binding	2.03E-02
71	GO:0009982: pseudouridine synthase activity	2.03E-02
72	GO:0003725: double-stranded RNA binding	2.03E-02
73	GO:0015266: protein channel activity	2.03E-02
74	GO:0016301: kinase activity	2.13E-02
75	GO:0003774: motor activity	2.21E-02
76	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.21E-02
77	GO:0003924: GTPase activity	2.36E-02
78	GO:0004190: aspartic-type endopeptidase activity	2.40E-02
79	GO:0008146: sulfotransferase activity	2.40E-02
80	GO:0003712: transcription cofactor activity	2.40E-02
81	GO:0051536: iron-sulfur cluster binding	2.79E-02
82	GO:0004707: MAP kinase activity	3.20E-02
83	GO:0008094: DNA-dependent ATPase activity	3.20E-02
84	GO:0033612: receptor serine/threonine kinase binding	3.20E-02
85	GO:0043565: sequence-specific DNA binding	3.20E-02
86	GO:0030570: pectate lyase activity	3.64E-02
87	GO:0008289: lipid binding	3.83E-02
88	GO:0003727: single-stranded RNA binding	3.86E-02
89	GO:0003756: protein disulfide isomerase activity	3.86E-02
90	GO:0004812: aminoacyl-tRNA ligase activity	4.08E-02
91	GO:0005525: GTP binding	4.35E-02
92	GO:0004527: exonuclease activity	4.55E-02
93	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.55E-02
94	GO:0015035: protein disulfide oxidoreductase activity	4.71E-02
95	GO:0003723: RNA binding	4.73E-02
96	GO:0004672: protein kinase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009507: chloroplast	2.84E-04
3	GO:0009941: chloroplast envelope	4.70E-04
4	GO:0000791: euchromatin	5.09E-04
5	GO:0009534: chloroplast thylakoid	9.50E-04
6	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.10E-03
7	GO:0031357: integral component of chloroplast inner membrane	1.10E-03
8	GO:0030870: Mre11 complex	1.10E-03
9	GO:0030139: endocytic vesicle	1.79E-03
10	GO:0009317: acetyl-CoA carboxylase complex	1.79E-03
11	GO:0046658: anchored component of plasma membrane	1.84E-03
12	GO:0009508: plastid chromosome	1.98E-03
13	GO:0032585: multivesicular body membrane	2.60E-03
14	GO:0005828: kinetochore microtubule	3.50E-03
15	GO:0030286: dynein complex	3.50E-03
16	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	3.50E-03
17	GO:0000795: synaptonemal complex	4.49E-03
18	GO:0000776: kinetochore	4.49E-03
19	GO:0005871: kinesin complex	5.32E-03
20	GO:0000793: condensed chromosome	5.56E-03
21	GO:0005886: plasma membrane	6.49E-03
22	GO:0000815: ESCRT III complex	6.71E-03
23	GO:0010369: chromocenter	6.71E-03
24	GO:0000777: condensed chromosome kinetochore	6.71E-03
25	GO:0009986: cell surface	7.95E-03
26	GO:0000794: condensed nuclear chromosome	7.95E-03
27	GO:0009295: nucleoid	9.91E-03
28	GO:0005876: spindle microtubule	1.36E-02
29	GO:0031225: anchored component of membrane	1.48E-02
30	GO:0009570: chloroplast stroma	1.51E-02
31	GO:0000418: DNA-directed RNA polymerase IV complex	1.52E-02
32	GO:0016459: myosin complex	1.52E-02
33	GO:0005884: actin filament	1.68E-02
34	GO:0030095: chloroplast photosystem II	2.21E-02
35	GO:0009654: photosystem II oxygen evolving complex	2.99E-02
36	GO:0015629: actin cytoskeleton	3.64E-02
37	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.86E-02
38	GO:0005874: microtubule	4.39E-02