co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G20070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001778: plasma membrane repair	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0031222: arabinan catabolic process	0.00E+00
4	GO:0061157: mRNA destabilization	0.00E+00
5	GO:0043392: negative regulation of DNA binding	0.00E+00
6	GO:0009733: response to auxin	2.20E-05
7	GO:0046620: regulation of organ growth	2.62E-04
8	GO:0005980: glycogen catabolic process	2.72E-04
9	GO:0030198: extracellular matrix organization	2.72E-04
10	GO:0046520: sphingoid biosynthetic process	2.72E-04
11	GO:0010480: microsporocyte differentiation	2.72E-04
12	GO:0015904: tetracycline transport	2.72E-04
13	GO:0000025: maltose catabolic process	2.72E-04
14	GO:0009638: phototropism	4.62E-04
15	GO:0006741: NADP biosynthetic process	5.99E-04
16	GO:0019388: galactose catabolic process	5.99E-04
17	GO:0071497: cellular response to freezing	5.99E-04
18	GO:0090342: regulation of cell aging	5.99E-04
19	GO:1900033: negative regulation of trichome patterning	5.99E-04
20	GO:0009786: regulation of asymmetric cell division	5.99E-04
21	GO:0046740: transport of virus in host, cell to cell	5.99E-04
22	GO:0031648: protein destabilization	5.99E-04
23	GO:0006568: tryptophan metabolic process	5.99E-04
24	GO:2000123: positive regulation of stomatal complex development	5.99E-04
25	GO:0009734: auxin-activated signaling pathway	6.14E-04
26	GO:0010102: lateral root morphogenesis	8.06E-04
27	GO:0006006: glucose metabolic process	8.06E-04
28	GO:0009266: response to temperature stimulus	9.06E-04
29	GO:0016255: attachment of GPI anchor to protein	9.72E-04
30	GO:0019674: NAD metabolic process	9.72E-04
31	GO:0033591: response to L-ascorbic acid	9.72E-04
32	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.39E-03
33	GO:0006612: protein targeting to membrane	1.39E-03
34	GO:0009590: detection of gravity	1.39E-03
35	GO:0010321: regulation of vegetative phase change	1.39E-03
36	GO:0019363: pyridine nucleotide biosynthetic process	1.39E-03
37	GO:0032456: endocytic recycling	1.39E-03
38	GO:0043207: response to external biotic stimulus	1.39E-03
39	GO:0009686: gibberellin biosynthetic process	1.79E-03
40	GO:2000038: regulation of stomatal complex development	1.86E-03
41	GO:1902347: response to strigolactone	1.86E-03
42	GO:0042938: dipeptide transport	1.86E-03
43	GO:0009755: hormone-mediated signaling pathway	1.86E-03
44	GO:1901141: regulation of lignin biosynthetic process	1.86E-03
45	GO:0048629: trichome patterning	1.86E-03
46	GO:0042274: ribosomal small subunit biogenesis	1.86E-03
47	GO:0009765: photosynthesis, light harvesting	1.86E-03
48	GO:0006857: oligopeptide transport	2.15E-03
49	GO:0016120: carotene biosynthetic process	2.37E-03
50	GO:0045487: gibberellin catabolic process	2.37E-03
51	GO:0048497: maintenance of floral organ identity	2.37E-03
52	GO:0016123: xanthophyll biosynthetic process	2.37E-03
53	GO:0010438: cellular response to sulfur starvation	2.37E-03
54	GO:0010375: stomatal complex patterning	2.37E-03
55	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.93E-03
56	GO:0009913: epidermal cell differentiation	2.93E-03
57	GO:1902456: regulation of stomatal opening	2.93E-03
58	GO:0010405: arabinogalactan protein metabolic process	2.93E-03
59	GO:0042549: photosystem II stabilization	2.93E-03
60	GO:0009959: negative gravitropism	2.93E-03
61	GO:1901657: glycosyl compound metabolic process	3.43E-03
62	GO:2000033: regulation of seed dormancy process	3.52E-03
63	GO:0031930: mitochondria-nucleus signaling pathway	3.52E-03
64	GO:0009612: response to mechanical stimulus	3.52E-03
65	GO:0009082: branched-chain amino acid biosynthetic process	3.52E-03
66	GO:0048509: regulation of meristem development	3.52E-03
67	GO:0009099: valine biosynthetic process	3.52E-03
68	GO:0030488: tRNA methylation	3.52E-03
69	GO:0010310: regulation of hydrogen peroxide metabolic process	3.52E-03
70	GO:0048437: floral organ development	4.15E-03
71	GO:0010098: suspensor development	4.15E-03
72	GO:0010161: red light signaling pathway	4.15E-03
73	GO:0045892: negative regulation of transcription, DNA-templated	4.26E-03
74	GO:0009819: drought recovery	4.82E-03
75	GO:0006402: mRNA catabolic process	4.82E-03
76	GO:0010439: regulation of glucosinolate biosynthetic process	4.82E-03
77	GO:0009704: de-etiolation	4.82E-03
78	GO:2000070: regulation of response to water deprivation	4.82E-03
79	GO:0005978: glycogen biosynthetic process	4.82E-03
80	GO:0016042: lipid catabolic process	5.48E-03
81	GO:0009097: isoleucine biosynthetic process	5.52E-03
82	GO:0010100: negative regulation of photomorphogenesis	5.52E-03
83	GO:0010099: regulation of photomorphogenesis	5.52E-03
84	GO:0051865: protein autoubiquitination	6.25E-03
85	GO:0010206: photosystem II repair	6.25E-03
86	GO:0006783: heme biosynthetic process	6.25E-03
87	GO:0000902: cell morphogenesis	6.25E-03
88	GO:0009451: RNA modification	6.37E-03
89	GO:0031425: chloroplast RNA processing	7.03E-03
90	GO:0009098: leucine biosynthetic process	7.03E-03
91	GO:0009739: response to gibberellin	7.13E-03
92	GO:0048829: root cap development	7.82E-03
93	GO:0009641: shade avoidance	7.82E-03
94	GO:0016441: posttranscriptional gene silencing	7.82E-03
95	GO:0010629: negative regulation of gene expression	7.82E-03
96	GO:0009682: induced systemic resistance	8.66E-03
97	GO:0048229: gametophyte development	8.66E-03
98	GO:0009698: phenylpropanoid metabolic process	8.66E-03
99	GO:0009640: photomorphogenesis	9.30E-03
100	GO:0009926: auxin polar transport	9.30E-03
101	GO:0005983: starch catabolic process	9.52E-03
102	GO:0015706: nitrate transport	9.52E-03
103	GO:0010105: negative regulation of ethylene-activated signaling pathway	9.52E-03
104	GO:0012501: programmed cell death	9.52E-03
105	GO:0009785: blue light signaling pathway	1.04E-02
106	GO:0010628: positive regulation of gene expression	1.04E-02
107	GO:2000028: regulation of photoperiodism, flowering	1.04E-02
108	GO:0010075: regulation of meristem growth	1.04E-02
109	GO:0009767: photosynthetic electron transport chain	1.04E-02
110	GO:0010588: cotyledon vascular tissue pattern formation	1.04E-02
111	GO:0009934: regulation of meristem structural organization	1.13E-02
112	GO:0090351: seedling development	1.23E-02
113	GO:0009416: response to light stimulus	1.37E-02
114	GO:0010187: negative regulation of seed germination	1.43E-02
115	GO:0080147: root hair cell development	1.43E-02
116	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.48E-02
117	GO:0007165: signal transduction	1.63E-02
118	GO:0048278: vesicle docking	1.64E-02
119	GO:0016114: terpenoid biosynthetic process	1.64E-02
120	GO:0048511: rhythmic process	1.64E-02
121	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.75E-02
122	GO:0010082: regulation of root meristem growth	1.86E-02
123	GO:0009625: response to insect	1.86E-02
124	GO:0045492: xylan biosynthetic process	1.97E-02
125	GO:0016117: carotenoid biosynthetic process	2.09E-02
126	GO:0009409: response to cold	2.13E-02
127	GO:0080022: primary root development	2.21E-02
128	GO:0010087: phloem or xylem histogenesis	2.21E-02
129	GO:0010118: stomatal movement	2.21E-02
130	GO:0048653: anther development	2.21E-02
131	GO:0010305: leaf vascular tissue pattern formation	2.33E-02
132	GO:0009741: response to brassinosteroid	2.33E-02
133	GO:0009058: biosynthetic process	2.37E-02
134	GO:0061025: membrane fusion	2.45E-02
135	GO:0042752: regulation of circadian rhythm	2.45E-02
136	GO:0048825: cotyledon development	2.58E-02
137	GO:0019252: starch biosynthetic process	2.58E-02
138	GO:0006351: transcription, DNA-templated	2.70E-02
139	GO:0071554: cell wall organization or biogenesis	2.71E-02
140	GO:0010583: response to cyclopentenone	2.84E-02
141	GO:0016032: viral process	2.84E-02
142	GO:0032502: developmental process	2.84E-02
143	GO:0040008: regulation of growth	2.96E-02
144	GO:0030163: protein catabolic process	2.97E-02
145	GO:0009567: double fertilization forming a zygote and endosperm	3.10E-02
146	GO:0007267: cell-cell signaling	3.24E-02
147	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.29E-02
148	GO:0016567: protein ubiquitination	3.32E-02
149	GO:0010027: thylakoid membrane organization	3.52E-02
150	GO:0009615: response to virus	3.52E-02
151	GO:0010029: regulation of seed germination	3.66E-02
152	GO:0006906: vesicle fusion	3.80E-02
153	GO:0015995: chlorophyll biosynthetic process	3.95E-02
154	GO:0048573: photoperiodism, flowering	3.95E-02
155	GO:0030154: cell differentiation	4.38E-02
156	GO:0010311: lateral root formation	4.40E-02
157	GO:0000160: phosphorelay signal transduction system	4.40E-02
158	GO:0009631: cold acclimation	4.71E-02
159	GO:0006865: amino acid transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0015267: channel activity	0.00E+00
5	GO:0097100: supercoiled DNA binding	0.00E+00
6	GO:0005201: extracellular matrix structural constituent	0.00E+00
7	GO:0010313: phytochrome binding	2.72E-04
8	GO:0004134: 4-alpha-glucanotransferase activity	2.72E-04
9	GO:0004645: phosphorylase activity	2.72E-04
10	GO:0042736: NADH kinase activity	2.72E-04
11	GO:0000170: sphingosine hydroxylase activity	2.72E-04
12	GO:0050139: nicotinate-N-glucosyltransferase activity	2.72E-04
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.72E-04
14	GO:0008184: glycogen phosphorylase activity	2.72E-04
15	GO:0042284: sphingolipid delta-4 desaturase activity	5.99E-04
16	GO:0008493: tetracycline transporter activity	5.99E-04
17	GO:1901981: phosphatidylinositol phosphate binding	5.99E-04
18	GO:0004614: phosphoglucomutase activity	5.99E-04
19	GO:0045543: gibberellin 2-beta-dioxygenase activity	5.99E-04
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.99E-04
21	GO:0052656: L-isoleucine transaminase activity	1.39E-03
22	GO:0052654: L-leucine transaminase activity	1.39E-03
23	GO:0052655: L-valine transaminase activity	1.39E-03
24	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.39E-03
25	GO:0004084: branched-chain-amino-acid transaminase activity	1.86E-03
26	GO:0019199: transmembrane receptor protein kinase activity	1.86E-03
27	GO:0046556: alpha-L-arabinofuranosidase activity	1.86E-03
28	GO:0042936: dipeptide transporter activity	1.86E-03
29	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	2.93E-03
30	GO:0080030: methyl indole-3-acetate esterase activity	2.93E-03
31	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.93E-03
32	GO:0016832: aldehyde-lyase activity	3.52E-03
33	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.52E-03
34	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.25E-03
35	GO:0102483: scopolin beta-glucosidase activity	5.13E-03
36	GO:0003951: NAD+ kinase activity	5.52E-03
37	GO:0008173: RNA methyltransferase activity	5.52E-03
38	GO:0016207: 4-coumarate-CoA ligase activity	6.25E-03
39	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	6.57E-03
40	GO:0008422: beta-glucosidase activity	7.87E-03
41	GO:0047372: acylglycerol lipase activity	8.66E-03
42	GO:0016788: hydrolase activity, acting on ester bonds	1.10E-02
43	GO:0008146: sulfotransferase activity	1.23E-02
44	GO:0003712: transcription cofactor activity	1.23E-02
45	GO:0004190: aspartic-type endopeptidase activity	1.23E-02
46	GO:0044212: transcription regulatory region DNA binding	1.27E-02
47	GO:0016298: lipase activity	1.30E-02
48	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.38E-02
49	GO:0051087: chaperone binding	1.53E-02
50	GO:0005345: purine nucleobase transmembrane transporter activity	1.53E-02
51	GO:0033612: receptor serine/threonine kinase binding	1.64E-02
52	GO:0003964: RNA-directed DNA polymerase activity	1.64E-02
53	GO:0010333: terpene synthase activity	1.64E-02
54	GO:0016874: ligase activity	1.69E-02
55	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.78E-02
56	GO:0042803: protein homodimerization activity	1.89E-02
57	GO:0004871: signal transducer activity	1.89E-02
58	GO:0003727: single-stranded RNA binding	1.97E-02
59	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.04E-02
60	GO:0005199: structural constituent of cell wall	2.33E-02
61	GO:0001085: RNA polymerase II transcription factor binding	2.33E-02
62	GO:0009055: electron carrier activity	2.53E-02
63	GO:0019901: protein kinase binding	2.58E-02
64	GO:0004519: endonuclease activity	2.58E-02
65	GO:0004518: nuclease activity	2.84E-02
66	GO:0000156: phosphorelay response regulator activity	2.97E-02
67	GO:0016759: cellulose synthase activity	3.10E-02
68	GO:0016413: O-acetyltransferase activity	3.38E-02
69	GO:0004674: protein serine/threonine kinase activity	3.50E-02
70	GO:0043565: sequence-specific DNA binding	3.77E-02
71	GO:0016757: transferase activity, transferring glycosyl groups	4.06E-02
72	GO:0008236: serine-type peptidase activity	4.10E-02
73	GO:0003824: catalytic activity	4.43E-02
74	GO:0005215: transporter activity	4.48E-02
75	GO:0008168: methyltransferase activity	4.60E-02
76	GO:0000287: magnesium ion binding	4.69E-02
77	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0032541: cortical endoplasmic reticulum	2.72E-04
2	GO:0030139: endocytic vesicle	9.72E-04
3	GO:0042765: GPI-anchor transamidase complex	9.72E-04
4	GO:0009654: photosystem II oxygen evolving complex	1.37E-03
5	GO:0032585: multivesicular body membrane	1.39E-03
6	GO:0009544: chloroplast ATP synthase complex	1.86E-03
7	GO:0009898: cytoplasmic side of plasma membrane	1.86E-03
8	GO:0019898: extrinsic component of membrane	2.82E-03
9	GO:0009986: cell surface	4.15E-03
10	GO:0009501: amyloplast	4.82E-03
11	GO:0005578: proteinaceous extracellular matrix	1.04E-02
12	GO:0010008: endosome membrane	1.54E-02
13	GO:0009534: chloroplast thylakoid	1.81E-02
14	GO:0009504: cell plate	2.58E-02
15	GO:0043231: intracellular membrane-bounded organelle	2.62E-02
16	GO:0010319: stromule	3.24E-02
17	GO:0005794: Golgi apparatus	3.46E-02
18	GO:0030529: intracellular ribonucleoprotein complex	3.52E-02
19	GO:0005667: transcription factor complex	3.80E-02
20	GO:0009707: chloroplast outer membrane	4.25E-02