co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G19850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
2	GO:0045176: apical protein localization	0.00E+00
3	GO:0046460: neutral lipid biosynthetic process	0.00E+00
4	GO:0043972: histone H3-K23 acetylation	0.00E+00
5	GO:0019685: photosynthesis, dark reaction	0.00E+00
6	GO:0044154: histone H3-K14 acetylation	0.00E+00
7	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.28E-04
8	GO:0009926: auxin polar transport	3.16E-04
9	GO:0043971: histone H3-K18 acetylation	3.44E-04
10	GO:0043087: regulation of GTPase activity	3.44E-04
11	GO:0034757: negative regulation of iron ion transport	3.44E-04
12	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.44E-04
13	GO:0051171: regulation of nitrogen compound metabolic process	3.44E-04
14	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.44E-04
15	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.44E-04
16	GO:0009451: RNA modification	4.13E-04
17	GO:0007389: pattern specification process	4.56E-04
18	GO:0080175: phragmoplast microtubule organization	7.51E-04
19	GO:0080005: photosystem stoichiometry adjustment	7.51E-04
20	GO:0010271: regulation of chlorophyll catabolic process	7.51E-04
21	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	7.51E-04
22	GO:0001736: establishment of planar polarity	7.51E-04
23	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.51E-04
24	GO:0048255: mRNA stabilization	7.51E-04
25	GO:0010411: xyloglucan metabolic process	9.90E-04
26	GO:0006013: mannose metabolic process	1.21E-03
27	GO:0080117: secondary growth	1.21E-03
28	GO:0042780: tRNA 3'-end processing	1.21E-03
29	GO:0045493: xylan catabolic process	1.21E-03
30	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.21E-03
31	GO:0009734: auxin-activated signaling pathway	1.22E-03
32	GO:0010540: basipetal auxin transport	1.26E-03
33	GO:0080188: RNA-directed DNA methylation	1.41E-03
34	GO:0009800: cinnamic acid biosynthetic process	1.75E-03
35	GO:0010306: rhamnogalacturonan II biosynthetic process	1.75E-03
36	GO:0010255: glucose mediated signaling pathway	1.75E-03
37	GO:2001141: regulation of RNA biosynthetic process	1.75E-03
38	GO:0051639: actin filament network formation	1.75E-03
39	GO:0034059: response to anoxia	1.75E-03
40	GO:0015846: polyamine transport	2.35E-03
41	GO:0009956: radial pattern formation	2.35E-03
42	GO:0051764: actin crosslink formation	2.35E-03
43	GO:0051225: spindle assembly	3.00E-03
44	GO:0010158: abaxial cell fate specification	3.00E-03
45	GO:0048868: pollen tube development	3.45E-03
46	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.71E-03
47	GO:0006559: L-phenylalanine catabolic process	3.71E-03
48	GO:0048831: regulation of shoot system development	3.71E-03
49	GO:0048827: phyllome development	3.71E-03
50	GO:0002229: defense response to oomycetes	4.26E-03
51	GO:0034389: lipid particle organization	4.47E-03
52	GO:0009942: longitudinal axis specification	4.47E-03
53	GO:0048509: regulation of meristem development	4.47E-03
54	GO:0048444: floral organ morphogenesis	4.47E-03
55	GO:0010252: auxin homeostasis	5.17E-03
56	GO:0006401: RNA catabolic process	5.27E-03
57	GO:0009610: response to symbiotic fungus	5.27E-03
58	GO:0010050: vegetative phase change	5.27E-03
59	GO:0080167: response to karrikin	5.38E-03
60	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.67E-03
61	GO:0006353: DNA-templated transcription, termination	6.13E-03
62	GO:0009850: auxin metabolic process	6.13E-03
63	GO:0009416: response to light stimulus	6.83E-03
64	GO:0009657: plastid organization	7.03E-03
65	GO:0010052: guard cell differentiation	7.03E-03
66	GO:0044030: regulation of DNA methylation	7.03E-03
67	GO:0009932: cell tip growth	7.03E-03
68	GO:0006002: fructose 6-phosphate metabolic process	7.03E-03
69	GO:0071482: cellular response to light stimulus	7.03E-03
70	GO:0019432: triglyceride biosynthetic process	7.97E-03
71	GO:0000373: Group II intron splicing	7.97E-03
72	GO:0000160: phosphorelay signal transduction system	8.47E-03
73	GO:0010380: regulation of chlorophyll biosynthetic process	8.96E-03
74	GO:0008202: steroid metabolic process	8.96E-03
75	GO:0006468: protein phosphorylation	9.29E-03
76	GO:0019538: protein metabolic process	1.00E-02
77	GO:0006535: cysteine biosynthetic process from serine	1.00E-02
78	GO:0048829: root cap development	1.00E-02
79	GO:0006415: translational termination	1.11E-02
80	GO:0006352: DNA-templated transcription, initiation	1.11E-02
81	GO:0009750: response to fructose	1.11E-02
82	GO:0016485: protein processing	1.11E-02
83	GO:0048765: root hair cell differentiation	1.11E-02
84	GO:0010582: floral meristem determinacy	1.22E-02
85	GO:0051707: response to other organism	1.32E-02
86	GO:0010229: inflorescence development	1.33E-02
87	GO:0042546: cell wall biogenesis	1.38E-02
88	GO:0010020: chloroplast fission	1.45E-02
89	GO:0009933: meristem structural organization	1.45E-02
90	GO:0009934: regulation of meristem structural organization	1.45E-02
91	GO:0009793: embryo development ending in seed dormancy	1.53E-02
92	GO:0010053: root epidermal cell differentiation	1.58E-02
93	GO:0009825: multidimensional cell growth	1.58E-02
94	GO:0009658: chloroplast organization	1.68E-02
95	GO:0006863: purine nucleobase transport	1.70E-02
96	GO:0006071: glycerol metabolic process	1.70E-02
97	GO:0009736: cytokinin-activated signaling pathway	1.79E-02
98	GO:0010187: negative regulation of seed germination	1.83E-02
99	GO:0051017: actin filament bundle assembly	1.83E-02
100	GO:0006289: nucleotide-excision repair	1.83E-02
101	GO:0019344: cysteine biosynthetic process	1.83E-02
102	GO:0010073: meristem maintenance	1.96E-02
103	GO:0051302: regulation of cell division	1.96E-02
104	GO:0003333: amino acid transmembrane transport	2.10E-02
105	GO:0006306: DNA methylation	2.10E-02
106	GO:0035428: hexose transmembrane transport	2.24E-02
107	GO:0016226: iron-sulfur cluster assembly	2.24E-02
108	GO:0071555: cell wall organization	2.30E-02
109	GO:0009693: ethylene biosynthetic process	2.38E-02
110	GO:0071215: cellular response to abscisic acid stimulus	2.38E-02
111	GO:0009740: gibberellic acid mediated signaling pathway	2.40E-02
112	GO:0006284: base-excision repair	2.53E-02
113	GO:0009624: response to nematode	2.55E-02
114	GO:0070417: cellular response to cold	2.68E-02
115	GO:0051726: regulation of cell cycle	2.70E-02
116	GO:0000271: polysaccharide biosynthetic process	2.83E-02
117	GO:0010087: phloem or xylem histogenesis	2.83E-02
118	GO:0048653: anther development	2.83E-02
119	GO:0010305: leaf vascular tissue pattern formation	2.99E-02
120	GO:0009958: positive gravitropism	2.99E-02
121	GO:0046323: glucose import	2.99E-02
122	GO:0045489: pectin biosynthetic process	2.99E-02
123	GO:0048825: cotyledon development	3.31E-02
124	GO:0009749: response to glucose	3.31E-02
125	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.47E-02
126	GO:0010583: response to cyclopentenone	3.64E-02
127	GO:0031047: gene silencing by RNA	3.64E-02
128	GO:0009630: gravitropism	3.64E-02
129	GO:0071281: cellular response to iron ion	3.81E-02
130	GO:0006633: fatty acid biosynthetic process	4.00E-02
131	GO:0040008: regulation of growth	4.19E-02
132	GO:0007623: circadian rhythm	4.38E-02
133	GO:0009911: positive regulation of flower development	4.51E-02
134	GO:0016126: sterol biosynthetic process	4.51E-02
135	GO:0010029: regulation of seed germination	4.69E-02
136	GO:0007166: cell surface receptor signaling pathway	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
2	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
3	GO:0019808: polyamine binding	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0008859: exoribonuclease II activity	0.00E+00
6	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	3.44E-04
7	GO:0017091: AU-rich element binding	3.44E-04
8	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	3.44E-04
9	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.44E-04
10	GO:0009672: auxin:proton symporter activity	6.45E-04
11	GO:0009884: cytokinin receptor activity	7.51E-04
12	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	7.51E-04
13	GO:0050017: L-3-cyanoalanine synthase activity	7.51E-04
14	GO:0005094: Rho GDP-dissociation inhibitor activity	7.51E-04
15	GO:0004047: aminomethyltransferase activity	7.51E-04
16	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	7.51E-04
17	GO:0008805: carbon-monoxide oxygenase activity	7.51E-04
18	GO:0010329: auxin efflux transmembrane transporter activity	1.12E-03
19	GO:0005096: GTPase activator activity	1.20E-03
20	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.21E-03
21	GO:0016805: dipeptidase activity	1.21E-03
22	GO:0005034: osmosensor activity	1.21E-03
23	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.21E-03
24	GO:0045548: phenylalanine ammonia-lyase activity	1.21E-03
25	GO:0000254: C-4 methylsterol oxidase activity	1.75E-03
26	GO:0043424: protein histidine kinase binding	1.92E-03
27	GO:0070628: proteasome binding	2.35E-03
28	GO:0009044: xylan 1,4-beta-xylosidase activity	2.35E-03
29	GO:0046556: alpha-L-arabinofuranosidase activity	2.35E-03
30	GO:0001053: plastid sigma factor activity	2.35E-03
31	GO:0010011: auxin binding	2.35E-03
32	GO:0016987: sigma factor activity	2.35E-03
33	GO:0010328: auxin influx transmembrane transporter activity	2.35E-03
34	GO:0010385: double-stranded methylated DNA binding	2.35E-03
35	GO:0005471: ATP:ADP antiporter activity	3.00E-03
36	GO:0008725: DNA-3-methyladenine glycosylase activity	3.00E-03
37	GO:0031593: polyubiquitin binding	3.71E-03
38	GO:0019901: protein kinase binding	3.98E-03
39	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.26E-03
40	GO:0004144: diacylglycerol O-acyltransferase activity	4.47E-03
41	GO:0019900: kinase binding	4.47E-03
42	GO:0004559: alpha-mannosidase activity	4.47E-03
43	GO:0004124: cysteine synthase activity	4.47E-03
44	GO:0003872: 6-phosphofructokinase activity	5.27E-03
45	GO:0019899: enzyme binding	5.27E-03
46	GO:0008237: metallopeptidase activity	5.49E-03
47	GO:0008142: oxysterol binding	7.03E-03
48	GO:0016798: hydrolase activity, acting on glycosyl bonds	7.26E-03
49	GO:0003747: translation release factor activity	7.97E-03
50	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	8.89E-03
51	GO:0004713: protein tyrosine kinase activity	1.00E-02
52	GO:0004673: protein histidine kinase activity	1.00E-02
53	GO:0015020: glucuronosyltransferase activity	1.00E-02
54	GO:0016301: kinase activity	1.05E-02
55	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.11E-02
56	GO:0004519: endonuclease activity	1.11E-02
57	GO:0008327: methyl-CpG binding	1.11E-02
58	GO:0000155: phosphorelay sensor kinase activity	1.33E-02
59	GO:0009982: pseudouridine synthase activity	1.33E-02
60	GO:0000175: 3'-5'-exoribonuclease activity	1.33E-02
61	GO:0035091: phosphatidylinositol binding	1.43E-02
62	GO:0043621: protein self-association	1.43E-02
63	GO:0004674: protein serine/threonine kinase activity	1.44E-02
64	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.45E-02
65	GO:0004672: protein kinase activity	1.64E-02
66	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.70E-02
67	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.70E-02
68	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.70E-02
69	GO:0004857: enzyme inhibitor activity	1.83E-02
70	GO:0043130: ubiquitin binding	1.83E-02
71	GO:0005345: purine nucleobase transmembrane transporter activity	1.96E-02
72	GO:0004540: ribonuclease activity	2.10E-02
73	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.24E-02
74	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.32E-02
75	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.32E-02
76	GO:0030570: pectate lyase activity	2.38E-02
77	GO:0004402: histone acetyltransferase activity	2.83E-02
78	GO:0004871: signal transducer activity	2.93E-02
79	GO:0008080: N-acetyltransferase activity	2.99E-02
80	GO:0001085: RNA polymerase II transcription factor binding	2.99E-02
81	GO:0016758: transferase activity, transferring hexosyl groups	3.10E-02
82	GO:0010181: FMN binding	3.15E-02
83	GO:0005355: glucose transmembrane transporter activity	3.15E-02
84	GO:0000156: phosphorelay response regulator activity	3.81E-02
85	GO:0051015: actin filament binding	3.81E-02
86	GO:0015144: carbohydrate transmembrane transporter activity	3.81E-02
87	GO:0003684: damaged DNA binding	3.98E-02
88	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.09E-02
89	GO:0003723: RNA binding	4.29E-02
90	GO:0005351: sugar:proton symporter activity	4.29E-02
91	GO:0008194: UDP-glycosyltransferase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0010370: perinucleolar chromocenter	3.44E-04
4	GO:0070652: HAUS complex	1.21E-03
5	GO:0009507: chloroplast	1.75E-03
6	GO:0032432: actin filament bundle	1.75E-03
7	GO:0000178: exosome (RNase complex)	3.00E-03
8	GO:0005945: 6-phosphofructokinase complex	3.00E-03
9	GO:0009986: cell surface	5.27E-03
10	GO:0005811: lipid particle	7.03E-03
11	GO:0008180: COP9 signalosome	7.97E-03
12	GO:0005720: nuclear heterochromatin	7.97E-03
13	GO:0005884: actin filament	1.11E-02
14	GO:0005819: spindle	1.12E-02
15	GO:0016602: CCAAT-binding factor complex	1.33E-02
16	GO:0009574: preprophase band	1.33E-02
17	GO:0000419: DNA-directed RNA polymerase V complex	1.70E-02
18	GO:0045271: respiratory chain complex I	1.96E-02
19	GO:0009532: plastid stroma	2.10E-02
20	GO:0005770: late endosome	2.99E-02
21	GO:0009505: plant-type cell wall	3.36E-02
22	GO:0005886: plasma membrane	3.93E-02
23	GO:0043231: intracellular membrane-bounded organelle	4.04E-02
24	GO:0000932: P-body	4.51E-02
25	GO:0005789: endoplasmic reticulum membrane	4.64E-02
26	GO:0005667: transcription factor complex	4.87E-02