Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G18960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006907: pinocytosis0.00E+00
2GO:0034757: negative regulation of iron ion transport7.39E-05
3GO:0043087: regulation of GTPase activity7.39E-05
4GO:0010271: regulation of chlorophyll catabolic process1.77E-04
5GO:0080117: secondary growth2.99E-04
6GO:0034059: response to anoxia4.32E-04
7GO:0044211: CTP salvage4.32E-04
8GO:0009800: cinnamic acid biosynthetic process4.32E-04
9GO:2000904: regulation of starch metabolic process4.32E-04
10GO:0044206: UMP salvage5.75E-04
11GO:0009956: radial pattern formation5.75E-04
12GO:0009696: salicylic acid metabolic process7.29E-04
13GO:0009920: cell plate formation involved in plant-type cell wall biogenesis8.91E-04
14GO:0006559: L-phenylalanine catabolic process8.91E-04
15GO:0006206: pyrimidine nucleobase metabolic process8.91E-04
16GO:0060918: auxin transport8.91E-04
17GO:0048831: regulation of shoot system development8.91E-04
18GO:0009942: longitudinal axis specification1.06E-03
19GO:0048509: regulation of meristem development1.06E-03
20GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.06E-03
21GO:0000082: G1/S transition of mitotic cell cycle1.24E-03
22GO:0010444: guard mother cell differentiation1.24E-03
23GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.24E-03
24GO:0009610: response to symbiotic fungus1.24E-03
25GO:0030001: metal ion transport1.38E-03
26GO:0007186: G-protein coupled receptor signaling pathway1.63E-03
27GO:0032544: plastid translation1.63E-03
28GO:0046916: cellular transition metal ion homeostasis1.83E-03
29GO:0009056: catabolic process1.83E-03
30GO:0006782: protoporphyrinogen IX biosynthetic process2.28E-03
31GO:0016485: protein processing2.51E-03
32GO:0045037: protein import into chloroplast stroma2.75E-03
33GO:0051726: regulation of cell cycle3.12E-03
34GO:0009933: meristem structural organization3.25E-03
35GO:0010540: basipetal auxin transport3.25E-03
36GO:0009825: multidimensional cell growth3.51E-03
37GO:0006874: cellular calcium ion homeostasis4.34E-03
38GO:0006633: fatty acid biosynthetic process4.61E-03
39GO:0040008: regulation of growth4.83E-03
40GO:0016226: iron-sulfur cluster assembly4.93E-03
41GO:0071215: cellular response to abscisic acid stimulus5.23E-03
42GO:0042127: regulation of cell proliferation5.54E-03
43GO:0070417: cellular response to cold5.86E-03
44GO:0010087: phloem or xylem histogenesis6.18E-03
45GO:0010305: leaf vascular tissue pattern formation6.51E-03
46GO:0009958: positive gravitropism6.51E-03
47GO:0009741: response to brassinosteroid6.51E-03
48GO:0009658: chloroplast organization7.82E-03
49GO:0010583: response to cyclopentenone7.89E-03
50GO:0000910: cytokinesis9.36E-03
51GO:0016126: sterol biosynthetic process9.74E-03
52GO:0010029: regulation of seed germination1.01E-02
53GO:0009627: systemic acquired resistance1.05E-02
54GO:0015995: chlorophyll biosynthetic process1.09E-02
55GO:0009817: defense response to fungus, incompatible interaction1.17E-02
56GO:0000160: phosphorelay signal transduction system1.22E-02
57GO:0006811: ion transport1.26E-02
58GO:0007568: aging1.30E-02
59GO:0051707: response to other organism1.66E-02
60GO:0009926: auxin polar transport1.66E-02
61GO:0009744: response to sucrose1.66E-02
62GO:0009636: response to toxic substance1.80E-02
63GO:0009965: leaf morphogenesis1.80E-02
64GO:0009734: auxin-activated signaling pathway2.03E-02
65GO:0006364: rRNA processing2.05E-02
66GO:0009736: cytokinin-activated signaling pathway2.05E-02
67GO:0009909: regulation of flower development2.21E-02
68GO:0048316: seed development2.37E-02
69GO:0009416: response to light stimulus2.55E-02
70GO:0009611: response to wounding2.61E-02
71GO:0051301: cell division2.78E-02
72GO:0009058: biosynthetic process3.21E-02
73GO:0009793: embryo development ending in seed dormancy3.39E-02
74GO:0042744: hydrogen peroxide catabolic process3.39E-02
75GO:0016310: phosphorylation3.64E-02
RankGO TermAdjusted P value
1GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
2GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
3GO:0004047: aminomethyltransferase activity1.77E-04
4GO:0004109: coproporphyrinogen oxidase activity1.77E-04
5GO:0008805: carbon-monoxide oxygenase activity1.77E-04
6GO:0009884: cytokinin receptor activity1.77E-04
7GO:0010296: prenylcysteine methylesterase activity1.77E-04
8GO:0045548: phenylalanine ammonia-lyase activity2.99E-04
9GO:0005034: osmosensor activity2.99E-04
10GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity2.99E-04
11GO:0080031: methyl salicylate esterase activity4.32E-04
12GO:0004930: G-protein coupled receptor activity5.75E-04
13GO:0004845: uracil phosphoribosyltransferase activity5.75E-04
14GO:0080030: methyl indole-3-acetate esterase activity8.91E-04
15GO:0005096: GTPase activator activity1.02E-03
16GO:0004849: uridine kinase activity1.06E-03
17GO:0019900: kinase binding1.06E-03
18GO:0046914: transition metal ion binding1.63E-03
19GO:0004673: protein histidine kinase activity2.28E-03
20GO:0003779: actin binding2.86E-03
21GO:0000155: phosphorelay sensor kinase activity3.00E-03
22GO:0005217: intracellular ligand-gated ion channel activity3.51E-03
23GO:0004970: ionotropic glutamate receptor activity3.51E-03
24GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.78E-03
25GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.78E-03
26GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.78E-03
27GO:0043424: protein histidine kinase binding4.34E-03
28GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity6.51E-03
29GO:0010181: FMN binding6.84E-03
30GO:0019901: protein kinase binding7.19E-03
31GO:0008237: metallopeptidase activity8.98E-03
32GO:0016301: kinase activity9.76E-03
33GO:0008236: serine-type peptidase activity1.13E-02
34GO:0004222: metalloendopeptidase activity1.26E-02
35GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.26E-02
36GO:0035091: phosphatidylinositol binding1.76E-02
37GO:0003676: nucleic acid binding2.14E-02
38GO:0004674: protein serine/threonine kinase activity2.79E-02
39GO:0019843: rRNA binding3.10E-02
40GO:0008565: protein transporter activity3.52E-02
41GO:0005525: GTP binding4.19E-02
42GO:0042802: identical protein binding4.62E-02
RankGO TermAdjusted P value
1GO:0016602: CCAAT-binding factor complex3.00E-03
2GO:0009574: preprophase band3.00E-03
3GO:0005789: endoplasmic reticulum membrane4.80E-03
4GO:0009707: chloroplast outer membrane1.17E-02
5GO:0005886: plasma membrane1.74E-02
6GO:0009706: chloroplast inner membrane2.64E-02
7GO:0005623: cell3.16E-02
8GO:0009507: chloroplast3.41E-02
9GO:0005759: mitochondrial matrix3.64E-02
10GO:0009570: chloroplast stroma4.22E-02
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Gene type



Gene DE type