GO Enrichment Analysis of Co-expressed Genes with
AT3G18750
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 5 | GO:0042407: cristae formation | 0.00E+00 |
| 6 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 7 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 8 | GO:0006066: alcohol metabolic process | 0.00E+00 |
| 9 | GO:0000476: maturation of 4.5S rRNA | 0.00E+00 |
| 10 | GO:0000967: rRNA 5'-end processing | 0.00E+00 |
| 11 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
| 12 | GO:1901259: chloroplast rRNA processing | 9.94E-07 |
| 13 | GO:0034470: ncRNA processing | 1.70E-06 |
| 14 | GO:0006353: DNA-templated transcription, termination | 2.48E-06 |
| 15 | GO:0006418: tRNA aminoacylation for protein translation | 4.69E-05 |
| 16 | GO:0042255: ribosome assembly | 1.51E-04 |
| 17 | GO:0009658: chloroplast organization | 1.70E-04 |
| 18 | GO:0034337: RNA folding | 1.88E-04 |
| 19 | GO:0005991: trehalose metabolic process | 1.88E-04 |
| 20 | GO:0005980: glycogen catabolic process | 1.88E-04 |
| 21 | GO:0009657: plastid organization | 1.88E-04 |
| 22 | GO:0042371: vitamin K biosynthetic process | 1.88E-04 |
| 23 | GO:0043686: co-translational protein modification | 1.88E-04 |
| 24 | GO:0043007: maintenance of rDNA | 1.88E-04 |
| 25 | GO:0015995: chlorophyll biosynthetic process | 3.29E-04 |
| 26 | GO:0071452: cellular response to singlet oxygen | 4.24E-04 |
| 27 | GO:0006423: cysteinyl-tRNA aminoacylation | 4.24E-04 |
| 28 | GO:0018026: peptidyl-lysine monomethylation | 4.24E-04 |
| 29 | GO:0042325: regulation of phosphorylation | 4.24E-04 |
| 30 | GO:0006696: ergosterol biosynthetic process | 6.92E-04 |
| 31 | GO:0045338: farnesyl diphosphate metabolic process | 9.86E-04 |
| 32 | GO:0009152: purine ribonucleotide biosynthetic process | 9.86E-04 |
| 33 | GO:0010601: positive regulation of auxin biosynthetic process | 9.86E-04 |
| 34 | GO:0046653: tetrahydrofolate metabolic process | 9.86E-04 |
| 35 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 9.86E-04 |
| 36 | GO:0010731: protein glutathionylation | 9.86E-04 |
| 37 | GO:0046739: transport of virus in multicellular host | 9.86E-04 |
| 38 | GO:0022622: root system development | 1.31E-03 |
| 39 | GO:0009958: positive gravitropism | 1.46E-03 |
| 40 | GO:0006662: glycerol ether metabolic process | 1.46E-03 |
| 41 | GO:0010197: polar nucleus fusion | 1.46E-03 |
| 42 | GO:0032543: mitochondrial translation | 1.66E-03 |
| 43 | GO:0006564: L-serine biosynthetic process | 1.66E-03 |
| 44 | GO:0010236: plastoquinone biosynthetic process | 1.66E-03 |
| 45 | GO:0031365: N-terminal protein amino acid modification | 1.66E-03 |
| 46 | GO:0007094: mitotic spindle assembly checkpoint | 1.66E-03 |
| 47 | GO:0015979: photosynthesis | 1.73E-03 |
| 48 | GO:1901657: glycosyl compound metabolic process | 2.04E-03 |
| 49 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.05E-03 |
| 50 | GO:0000741: karyogamy | 2.05E-03 |
| 51 | GO:0042793: transcription from plastid promoter | 2.05E-03 |
| 52 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 2.05E-03 |
| 53 | GO:0009643: photosynthetic acclimation | 2.05E-03 |
| 54 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.05E-03 |
| 55 | GO:0042372: phylloquinone biosynthetic process | 2.46E-03 |
| 56 | GO:0048280: vesicle fusion with Golgi apparatus | 2.46E-03 |
| 57 | GO:0010027: thylakoid membrane organization | 2.58E-03 |
| 58 | GO:0009772: photosynthetic electron transport in photosystem II | 2.90E-03 |
| 59 | GO:0048437: floral organ development | 2.90E-03 |
| 60 | GO:0032880: regulation of protein localization | 2.90E-03 |
| 61 | GO:0070413: trehalose metabolism in response to stress | 3.36E-03 |
| 62 | GO:0010078: maintenance of root meristem identity | 3.36E-03 |
| 63 | GO:0015996: chlorophyll catabolic process | 3.84E-03 |
| 64 | GO:0010497: plasmodesmata-mediated intercellular transport | 3.84E-03 |
| 65 | GO:0032544: plastid translation | 3.84E-03 |
| 66 | GO:0043562: cellular response to nitrogen levels | 3.84E-03 |
| 67 | GO:0048527: lateral root development | 3.88E-03 |
| 68 | GO:0046685: response to arsenic-containing substance | 4.35E-03 |
| 69 | GO:0009821: alkaloid biosynthetic process | 4.35E-03 |
| 70 | GO:0046916: cellular transition metal ion homeostasis | 4.35E-03 |
| 71 | GO:0006783: heme biosynthetic process | 4.35E-03 |
| 72 | GO:0034599: cellular response to oxidative stress | 4.45E-03 |
| 73 | GO:0043067: regulation of programmed cell death | 4.87E-03 |
| 74 | GO:0031425: chloroplast RNA processing | 4.87E-03 |
| 75 | GO:0006896: Golgi to vacuole transport | 5.42E-03 |
| 76 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.42E-03 |
| 77 | GO:0045036: protein targeting to chloroplast | 5.42E-03 |
| 78 | GO:0009684: indoleacetic acid biosynthetic process | 5.99E-03 |
| 79 | GO:0009773: photosynthetic electron transport in photosystem I | 5.99E-03 |
| 80 | GO:0006415: translational termination | 5.99E-03 |
| 81 | GO:0006820: anion transport | 6.58E-03 |
| 82 | GO:0010588: cotyledon vascular tissue pattern formation | 7.19E-03 |
| 83 | GO:2000012: regulation of auxin polar transport | 7.19E-03 |
| 84 | GO:0015031: protein transport | 7.63E-03 |
| 85 | GO:0048467: gynoecium development | 7.82E-03 |
| 86 | GO:0009266: response to temperature stimulus | 7.82E-03 |
| 87 | GO:0048367: shoot system development | 9.02E-03 |
| 88 | GO:0045454: cell redox homeostasis | 9.09E-03 |
| 89 | GO:0005992: trehalose biosynthetic process | 9.83E-03 |
| 90 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.05E-02 |
| 91 | GO:0051321: meiotic cell cycle | 1.13E-02 |
| 92 | GO:0016114: terpenoid biosynthetic process | 1.13E-02 |
| 93 | GO:0006730: one-carbon metabolic process | 1.20E-02 |
| 94 | GO:0016226: iron-sulfur cluster assembly | 1.20E-02 |
| 95 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.28E-02 |
| 96 | GO:0009306: protein secretion | 1.35E-02 |
| 97 | GO:0009058: biosynthetic process | 1.39E-02 |
| 98 | GO:0016117: carotenoid biosynthetic process | 1.43E-02 |
| 99 | GO:0042147: retrograde transport, endosome to Golgi | 1.43E-02 |
| 100 | GO:0008284: positive regulation of cell proliferation | 1.43E-02 |
| 101 | GO:0080022: primary root development | 1.51E-02 |
| 102 | GO:0010087: phloem or xylem histogenesis | 1.51E-02 |
| 103 | GO:0009790: embryo development | 1.54E-02 |
| 104 | GO:0010182: sugar mediated signaling pathway | 1.60E-02 |
| 105 | GO:0007059: chromosome segregation | 1.68E-02 |
| 106 | GO:0055114: oxidation-reduction process | 1.70E-02 |
| 107 | GO:0006623: protein targeting to vacuole | 1.77E-02 |
| 108 | GO:0048825: cotyledon development | 1.77E-02 |
| 109 | GO:0009556: microsporogenesis | 1.77E-02 |
| 110 | GO:0009851: auxin biosynthetic process | 1.77E-02 |
| 111 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.85E-02 |
| 112 | GO:0032502: developmental process | 1.94E-02 |
| 113 | GO:0009828: plant-type cell wall loosening | 2.13E-02 |
| 114 | GO:0009793: embryo development ending in seed dormancy | 2.14E-02 |
| 115 | GO:0008380: RNA splicing | 2.18E-02 |
| 116 | GO:0016126: sterol biosynthetic process | 2.41E-02 |
| 117 | GO:0009416: response to light stimulus | 2.45E-02 |
| 118 | GO:0009607: response to biotic stimulus | 2.51E-02 |
| 119 | GO:0006906: vesicle fusion | 2.61E-02 |
| 120 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.71E-02 |
| 121 | GO:0048481: plant ovule development | 2.91E-02 |
| 122 | GO:0009832: plant-type cell wall biogenesis | 3.02E-02 |
| 123 | GO:0006508: proteolysis | 3.43E-02 |
| 124 | GO:0009853: photorespiration | 3.45E-02 |
| 125 | GO:0030001: metal ion transport | 3.78E-02 |
| 126 | GO:0006887: exocytosis | 3.89E-02 |
| 127 | GO:0042538: hyperosmotic salinity response | 4.85E-02 |
| 128 | GO:0009664: plant-type cell wall organization | 4.85E-02 |
| 129 | GO:0016042: lipid catabolic process | 5.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 2 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 3 | GO:0046577: long-chain-alcohol oxidase activity | 0.00E+00 |
| 4 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 5 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 6 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 7 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 8 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 9 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 10 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 11 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 12 | GO:0002161: aminoacyl-tRNA editing activity | 6.26E-06 |
| 13 | GO:0004812: aminoacyl-tRNA ligase activity | 9.25E-05 |
| 14 | GO:0080079: cellobiose glucosidase activity | 1.88E-04 |
| 15 | GO:0008184: glycogen phosphorylase activity | 1.88E-04 |
| 16 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.88E-04 |
| 17 | GO:0042586: peptide deformylase activity | 1.88E-04 |
| 18 | GO:0004856: xylulokinase activity | 1.88E-04 |
| 19 | GO:0004645: phosphorylase activity | 1.88E-04 |
| 20 | GO:0034256: chlorophyll(ide) b reductase activity | 1.88E-04 |
| 21 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.88E-04 |
| 22 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 4.24E-04 |
| 23 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.24E-04 |
| 24 | GO:0004817: cysteine-tRNA ligase activity | 4.24E-04 |
| 25 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 4.24E-04 |
| 26 | GO:0016630: protochlorophyllide reductase activity | 4.24E-04 |
| 27 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 4.24E-04 |
| 28 | GO:0003913: DNA photolyase activity | 6.92E-04 |
| 29 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.92E-04 |
| 30 | GO:0004751: ribose-5-phosphate isomerase activity | 6.92E-04 |
| 31 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 6.92E-04 |
| 32 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.92E-04 |
| 33 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.92E-04 |
| 34 | GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 9.86E-04 |
| 35 | GO:0016851: magnesium chelatase activity | 9.86E-04 |
| 36 | GO:0016149: translation release factor activity, codon specific | 9.86E-04 |
| 37 | GO:0022890: inorganic cation transmembrane transporter activity | 9.86E-04 |
| 38 | GO:0003727: single-stranded RNA binding | 1.16E-03 |
| 39 | GO:0047134: protein-disulfide reductase activity | 1.26E-03 |
| 40 | GO:0004659: prenyltransferase activity | 1.31E-03 |
| 41 | GO:0016279: protein-lysine N-methyltransferase activity | 1.31E-03 |
| 42 | GO:0004791: thioredoxin-disulfide reductase activity | 1.57E-03 |
| 43 | GO:0016846: carbon-sulfur lyase activity | 1.66E-03 |
| 44 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.66E-03 |
| 45 | GO:0003959: NADPH dehydrogenase activity | 1.66E-03 |
| 46 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.04E-03 |
| 47 | GO:0004629: phospholipase C activity | 2.05E-03 |
| 48 | GO:0019843: rRNA binding | 2.10E-03 |
| 49 | GO:0004435: phosphatidylinositol phospholipase C activity | 2.46E-03 |
| 50 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.46E-03 |
| 51 | GO:0102483: scopolin beta-glucosidase activity | 3.04E-03 |
| 52 | GO:0004525: ribonuclease III activity | 3.36E-03 |
| 53 | GO:0046914: transition metal ion binding | 3.84E-03 |
| 54 | GO:0071949: FAD binding | 4.35E-03 |
| 55 | GO:0003747: translation release factor activity | 4.35E-03 |
| 56 | GO:0008422: beta-glucosidase activity | 4.64E-03 |
| 57 | GO:0000149: SNARE binding | 4.64E-03 |
| 58 | GO:0016844: strictosidine synthase activity | 4.87E-03 |
| 59 | GO:0003723: RNA binding | 4.92E-03 |
| 60 | GO:0005484: SNAP receptor activity | 5.48E-03 |
| 61 | GO:0015386: potassium:proton antiporter activity | 5.99E-03 |
| 62 | GO:0008327: methyl-CpG binding | 5.99E-03 |
| 63 | GO:0008559: xenobiotic-transporting ATPase activity | 5.99E-03 |
| 64 | GO:0000049: tRNA binding | 6.58E-03 |
| 65 | GO:0019888: protein phosphatase regulator activity | 7.19E-03 |
| 66 | GO:0003725: double-stranded RNA binding | 7.19E-03 |
| 67 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.19E-03 |
| 68 | GO:0004089: carbonate dehydratase activity | 7.19E-03 |
| 69 | GO:0031072: heat shock protein binding | 7.19E-03 |
| 70 | GO:0003690: double-stranded DNA binding | 7.64E-03 |
| 71 | GO:0008083: growth factor activity | 7.82E-03 |
| 72 | GO:0031409: pigment binding | 9.14E-03 |
| 73 | GO:0051536: iron-sulfur cluster binding | 9.83E-03 |
| 74 | GO:0015079: potassium ion transmembrane transporter activity | 1.05E-02 |
| 75 | GO:0015035: protein disulfide oxidoreductase activity | 1.08E-02 |
| 76 | GO:0005525: GTP binding | 1.30E-02 |
| 77 | GO:0004252: serine-type endopeptidase activity | 1.47E-02 |
| 78 | GO:0008565: protein transporter activity | 1.58E-02 |
| 79 | GO:0015299: solute:proton antiporter activity | 1.68E-02 |
| 80 | GO:0016791: phosphatase activity | 2.13E-02 |
| 81 | GO:0008237: metallopeptidase activity | 2.22E-02 |
| 82 | GO:0016597: amino acid binding | 2.31E-02 |
| 83 | GO:0016168: chlorophyll binding | 2.51E-02 |
| 84 | GO:0016491: oxidoreductase activity | 2.67E-02 |
| 85 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.91E-02 |
| 86 | GO:0004222: metalloendopeptidase activity | 3.12E-02 |
| 87 | GO:0050660: flavin adenine dinucleotide binding | 3.27E-02 |
| 88 | GO:0004497: monooxygenase activity | 3.50E-02 |
| 89 | GO:0003993: acid phosphatase activity | 3.56E-02 |
| 90 | GO:0004364: glutathione transferase activity | 4.01E-02 |
| 91 | GO:0043621: protein self-association | 4.36E-02 |
| 92 | GO:0004871: signal transducer activity | 4.38E-02 |
| 93 | GO:0051287: NAD binding | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.88E-27 |
| 2 | GO:0009570: chloroplast stroma | 1.16E-14 |
| 3 | GO:0031969: chloroplast membrane | 2.89E-06 |
| 4 | GO:0009941: chloroplast envelope | 3.37E-05 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 3.94E-05 |
| 6 | GO:0009295: nucleoid | 2.25E-04 |
| 7 | GO:0009508: plastid chromosome | 4.86E-04 |
| 8 | GO:0009534: chloroplast thylakoid | 4.90E-04 |
| 9 | GO:0010007: magnesium chelatase complex | 6.92E-04 |
| 10 | GO:0033281: TAT protein transport complex | 6.92E-04 |
| 11 | GO:0042646: plastid nucleoid | 9.86E-04 |
| 12 | GO:0005828: kinetochore microtubule | 1.31E-03 |
| 13 | GO:0009706: chloroplast inner membrane | 1.58E-03 |
| 14 | GO:0000776: kinetochore | 1.66E-03 |
| 15 | GO:0009840: chloroplastic endopeptidase Clp complex | 2.46E-03 |
| 16 | GO:0000777: condensed chromosome kinetochore | 2.46E-03 |
| 17 | GO:0012507: ER to Golgi transport vesicle membrane | 3.36E-03 |
| 18 | GO:0042644: chloroplast nucleoid | 4.35E-03 |
| 19 | GO:0031901: early endosome membrane | 4.35E-03 |
| 20 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.35E-03 |
| 21 | GO:0005876: spindle microtubule | 4.87E-03 |
| 22 | GO:0031201: SNARE complex | 5.05E-03 |
| 23 | GO:0000159: protein phosphatase type 2A complex | 5.99E-03 |
| 24 | GO:0032040: small-subunit processome | 6.58E-03 |
| 25 | GO:0009536: plastid | 7.17E-03 |
| 26 | GO:0009579: thylakoid | 8.02E-03 |
| 27 | GO:0030076: light-harvesting complex | 8.47E-03 |
| 28 | GO:0015935: small ribosomal subunit | 1.13E-02 |
| 29 | GO:0009532: plastid stroma | 1.13E-02 |
| 30 | GO:0030529: intracellular ribonucleoprotein complex | 2.41E-02 |
| 31 | GO:0009707: chloroplast outer membrane | 2.91E-02 |
| 32 | GO:0000325: plant-type vacuole | 3.23E-02 |
| 33 | GO:0015934: large ribosomal subunit | 3.23E-02 |
| 34 | GO:0005789: endoplasmic reticulum membrane | 3.32E-02 |
| 35 | GO:0031902: late endosome membrane | 3.89E-02 |
| 36 | GO:0031977: thylakoid lumen | 3.89E-02 |