co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G18680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:0042407: cristae formation	0.00E+00
6	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
7	GO:0045184: establishment of protein localization	0.00E+00
8	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
9	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
10	GO:0042352: GDP-L-fucose salvage	0.00E+00
11	GO:0061157: mRNA destabilization	0.00E+00
12	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
13	GO:0018026: peptidyl-lysine monomethylation	5.43E-06
14	GO:0046739: transport of virus in multicellular host	4.24E-05
15	GO:0005983: starch catabolic process	6.18E-05
16	GO:0010027: thylakoid membrane organization	8.60E-05
17	GO:0009416: response to light stimulus	1.30E-04
18	GO:0042793: transcription from plastid promoter	1.70E-04
19	GO:0009658: chloroplast organization	1.75E-04
20	GO:0042372: phylloquinone biosynthetic process	2.30E-04
21	GO:0030488: tRNA methylation	2.30E-04
22	GO:0048437: floral organ development	2.99E-04
23	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.47E-04
24	GO:0005980: glycogen catabolic process	3.47E-04
25	GO:0030198: extracellular matrix organization	3.47E-04
26	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	3.47E-04
27	GO:0090558: plant epidermis development	3.47E-04
28	GO:0046520: sphingoid biosynthetic process	3.47E-04
29	GO:0010063: positive regulation of trichoblast fate specification	3.47E-04
30	GO:0010480: microsporocyte differentiation	3.47E-04
31	GO:0042371: vitamin K biosynthetic process	3.47E-04
32	GO:0043686: co-translational protein modification	3.47E-04
33	GO:0035987: endodermal cell differentiation	3.47E-04
34	GO:0043007: maintenance of rDNA	3.47E-04
35	GO:0015904: tetracycline transport	3.47E-04
36	GO:0005991: trehalose metabolic process	3.47E-04
37	GO:0000023: maltose metabolic process	3.47E-04
38	GO:0042659: regulation of cell fate specification	3.47E-04
39	GO:0000025: maltose catabolic process	3.47E-04
40	GO:0010305: leaf vascular tissue pattern formation	3.90E-04
41	GO:0006662: glycerol ether metabolic process	3.90E-04
42	GO:0009098: leucine biosynthetic process	6.53E-04
43	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.56E-04
44	GO:0009629: response to gravity	7.56E-04
45	GO:0030187: melatonin biosynthetic process	7.56E-04
46	GO:0006423: cysteinyl-tRNA aminoacylation	7.56E-04
47	GO:0007154: cell communication	7.56E-04
48	GO:0071497: cellular response to freezing	7.56E-04
49	GO:0042325: regulation of phosphorylation	7.56E-04
50	GO:1904143: positive regulation of carotenoid biosynthetic process	7.56E-04
51	GO:0031648: protein destabilization	7.56E-04
52	GO:0001682: tRNA 5'-leader removal	7.56E-04
53	GO:0006568: tryptophan metabolic process	7.56E-04
54	GO:0009793: embryo development ending in seed dormancy	8.01E-04
55	GO:0009773: photosynthetic electron transport in photosystem I	8.76E-04
56	GO:0010588: cotyledon vascular tissue pattern formation	1.13E-03
57	GO:0009405: pathogenesis	1.22E-03
58	GO:0034051: negative regulation of plant-type hypersensitive response	1.22E-03
59	GO:0033591: response to L-ascorbic acid	1.22E-03
60	GO:0090708: specification of plant organ axis polarity	1.22E-03
61	GO:0009734: auxin-activated signaling pathway	1.25E-03
62	GO:0010020: chloroplast fission	1.27E-03
63	GO:0009790: embryo development	1.57E-03
64	GO:0034599: cellular response to oxidative stress	1.62E-03
65	GO:0010306: rhamnogalacturonan II biosynthetic process	1.76E-03
66	GO:0016556: mRNA modification	1.76E-03
67	GO:0043572: plastid fission	1.76E-03
68	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.76E-03
69	GO:0010071: root meristem specification	1.76E-03
70	GO:0009102: biotin biosynthetic process	1.76E-03
71	GO:1901000: regulation of response to salt stress	1.76E-03
72	GO:0030104: water homeostasis	2.37E-03
73	GO:1901141: regulation of lignin biosynthetic process	2.37E-03
74	GO:0010109: regulation of photosynthesis	2.37E-03
75	GO:0042274: ribosomal small subunit biogenesis	2.37E-03
76	GO:0016131: brassinosteroid metabolic process	3.03E-03
77	GO:0032543: mitochondrial translation	3.03E-03
78	GO:0010236: plastoquinone biosynthetic process	3.03E-03
79	GO:0031365: N-terminal protein amino acid modification	3.03E-03
80	GO:0008033: tRNA processing	3.24E-03
81	GO:0009733: response to auxin	3.32E-03
82	GO:0010182: sugar mediated signaling pathway	3.49E-03
83	GO:0009741: response to brassinosteroid	3.49E-03
84	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.74E-03
85	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.74E-03
86	GO:0010405: arabinogalactan protein metabolic process	3.74E-03
87	GO:0009959: negative gravitropism	3.74E-03
88	GO:0009646: response to absence of light	3.75E-03
89	GO:0048367: shoot system development	4.00E-03
90	GO:0042026: protein refolding	4.50E-03
91	GO:0009082: branched-chain amino acid biosynthetic process	4.50E-03
92	GO:0006458: 'de novo' protein folding	4.50E-03
93	GO:2000033: regulation of seed dormancy process	4.50E-03
94	GO:0048280: vesicle fusion with Golgi apparatus	4.50E-03
95	GO:1901259: chloroplast rRNA processing	4.50E-03
96	GO:0009099: valine biosynthetic process	4.50E-03
97	GO:0080086: stamen filament development	4.50E-03
98	GO:2000067: regulation of root morphogenesis	4.50E-03
99	GO:1901657: glycosyl compound metabolic process	4.91E-03
100	GO:0009742: brassinosteroid mediated signaling pathway	5.24E-03
101	GO:0030307: positive regulation of cell growth	5.32E-03
102	GO:0010161: red light signaling pathway	5.32E-03
103	GO:0006955: immune response	5.32E-03
104	GO:0009772: photosynthetic electron transport in photosystem II	5.32E-03
105	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.76E-03
106	GO:0046620: regulation of organ growth	6.17E-03
107	GO:0006353: DNA-templated transcription, termination	6.17E-03
108	GO:0006605: protein targeting	6.17E-03
109	GO:0070413: trehalose metabolism in response to stress	6.17E-03
110	GO:2000070: regulation of response to water deprivation	6.17E-03
111	GO:0055075: potassium ion homeostasis	6.17E-03
112	GO:0000105: histidine biosynthetic process	6.17E-03
113	GO:0010497: plasmodesmata-mediated intercellular transport	7.08E-03
114	GO:0009657: plastid organization	7.08E-03
115	GO:0009097: isoleucine biosynthetic process	7.08E-03
116	GO:0010100: negative regulation of photomorphogenesis	7.08E-03
117	GO:0010099: regulation of photomorphogenesis	7.08E-03
118	GO:0045454: cell redox homeostasis	7.20E-03
119	GO:0015995: chlorophyll biosynthetic process	7.35E-03
120	GO:0051865: protein autoubiquitination	8.04E-03
121	GO:0048507: meristem development	8.04E-03
122	GO:0006783: heme biosynthetic process	8.04E-03
123	GO:0000902: cell morphogenesis	8.04E-03
124	GO:0046685: response to arsenic-containing substance	8.04E-03
125	GO:0000160: phosphorelay signal transduction system	8.56E-03
126	GO:1900865: chloroplast RNA modification	9.03E-03
127	GO:2000280: regulation of root development	9.03E-03
128	GO:0031425: chloroplast RNA processing	9.03E-03
129	GO:0043067: regulation of programmed cell death	9.03E-03
130	GO:0040008: regulation of growth	9.21E-03
131	GO:0010162: seed dormancy process	1.01E-02
132	GO:0006896: Golgi to vacuole transport	1.01E-02
133	GO:0048829: root cap development	1.01E-02
134	GO:0009451: RNA modification	1.01E-02
135	GO:0009073: aromatic amino acid family biosynthetic process	1.12E-02
136	GO:0043085: positive regulation of catalytic activity	1.12E-02
137	GO:0048229: gametophyte development	1.12E-02
138	GO:0000038: very long-chain fatty acid metabolic process	1.12E-02
139	GO:0006508: proteolysis	1.16E-02
140	GO:2000012: regulation of auxin polar transport	1.34E-02
141	GO:0010102: lateral root morphogenesis	1.34E-02
142	GO:0010628: positive regulation of gene expression	1.34E-02
143	GO:0009640: photomorphogenesis	1.34E-02
144	GO:0009691: cytokinin biosynthetic process	1.34E-02
145	GO:0006006: glucose metabolic process	1.34E-02
146	GO:0010075: regulation of meristem growth	1.34E-02
147	GO:0009266: response to temperature stimulus	1.46E-02
148	GO:0009934: regulation of meristem structural organization	1.46E-02
149	GO:0006855: drug transmembrane transport	1.56E-02
150	GO:0019853: L-ascorbic acid biosynthetic process	1.59E-02
151	GO:0090351: seedling development	1.59E-02
152	GO:0010030: positive regulation of seed germination	1.59E-02
153	GO:0006833: water transport	1.71E-02
154	GO:0000162: tryptophan biosynthetic process	1.71E-02
155	GO:0009736: cytokinin-activated signaling pathway	1.81E-02
156	GO:0010187: negative regulation of seed germination	1.85E-02
157	GO:0005992: trehalose biosynthetic process	1.85E-02
158	GO:0006857: oligopeptide transport	1.93E-02
159	GO:0006418: tRNA aminoacylation for protein translation	1.98E-02
160	GO:0051302: regulation of cell division	1.98E-02
161	GO:0048278: vesicle docking	2.12E-02
162	GO:0003333: amino acid transmembrane transport	2.12E-02
163	GO:0016998: cell wall macromolecule catabolic process	2.12E-02
164	GO:0061077: chaperone-mediated protein folding	2.12E-02
165	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.26E-02
166	GO:0006730: one-carbon metabolic process	2.26E-02
167	GO:0009686: gibberellin biosynthetic process	2.40E-02
168	GO:0006012: galactose metabolic process	2.40E-02
169	GO:0042127: regulation of cell proliferation	2.55E-02
170	GO:0009624: response to nematode	2.57E-02
171	GO:0042147: retrograde transport, endosome to Golgi	2.70E-02
172	GO:0051028: mRNA transport	2.70E-02
173	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.70E-02
174	GO:0042335: cuticle development	2.85E-02
175	GO:0080022: primary root development	2.85E-02
176	GO:0010087: phloem or xylem histogenesis	2.85E-02
177	GO:0048653: anther development	2.85E-02
178	GO:0042631: cellular response to water deprivation	2.85E-02
179	GO:0010197: polar nucleus fusion	3.01E-02
180	GO:0048868: pollen tube development	3.01E-02
181	GO:0010268: brassinosteroid homeostasis	3.01E-02
182	GO:0061025: membrane fusion	3.17E-02
183	GO:0006623: protein targeting to vacuole	3.33E-02
184	GO:0006891: intra-Golgi vesicle-mediated transport	3.50E-02
185	GO:0016042: lipid catabolic process	3.51E-02
186	GO:0010583: response to cyclopentenone	3.67E-02
187	GO:0016032: viral process	3.67E-02
188	GO:0032502: developmental process	3.67E-02
189	GO:0010090: trichome morphogenesis	3.84E-02
190	GO:0006633: fatty acid biosynthetic process	4.04E-02
191	GO:0010228: vegetative to reproductive phase transition of meristem	4.64E-02
192	GO:0005975: carbohydrate metabolic process	4.68E-02
193	GO:0010029: regulation of seed germination	4.73E-02
194	GO:0009607: response to biotic stimulus	4.73E-02
195	GO:0006906: vesicle fusion	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005363: maltose transmembrane transporter activity	0.00E+00
2	GO:0090711: FMN hydrolase activity	0.00E+00
3	GO:0050201: fucokinase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0004823: leucine-tRNA ligase activity	0.00E+00
6	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
7	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
8	GO:0005201: extracellular matrix structural constituent	0.00E+00
9	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
10	GO:0004076: biotin synthase activity	0.00E+00
11	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
12	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
13	GO:0016279: protein-lysine N-methyltransferase activity	7.53E-05
14	GO:0004176: ATP-dependent peptidase activity	1.98E-04
15	GO:0047134: protein-disulfide reductase activity	3.18E-04
16	GO:0042834: peptidoglycan binding	3.47E-04
17	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.47E-04
18	GO:0050308: sugar-phosphatase activity	3.47E-04
19	GO:0004856: xylulokinase activity	3.47E-04
20	GO:0004134: 4-alpha-glucanotransferase activity	3.47E-04
21	GO:0004645: phosphorylase activity	3.47E-04
22	GO:0019203: carbohydrate phosphatase activity	3.47E-04
23	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	3.47E-04
24	GO:0042586: peptide deformylase activity	3.47E-04
25	GO:0052381: tRNA dimethylallyltransferase activity	3.47E-04
26	GO:0008395: steroid hydroxylase activity	3.47E-04
27	GO:0010313: phytochrome binding	3.47E-04
28	GO:0005080: protein kinase C binding	3.47E-04
29	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.47E-04
30	GO:0000170: sphingosine hydroxylase activity	3.47E-04
31	GO:0050139: nicotinate-N-glucosyltransferase activity	3.47E-04
32	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.47E-04
33	GO:0008184: glycogen phosphorylase activity	3.47E-04
34	GO:0004791: thioredoxin-disulfide reductase activity	4.29E-04
35	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.06E-04
36	GO:0008237: metallopeptidase activity	7.07E-04
37	GO:0042284: sphingolipid delta-4 desaturase activity	7.56E-04
38	GO:0008493: tetracycline transporter activity	7.56E-04
39	GO:0003852: 2-isopropylmalate synthase activity	7.56E-04
40	GO:0004817: cysteine-tRNA ligase activity	7.56E-04
41	GO:0003913: DNA photolyase activity	1.22E-03
42	GO:0002161: aminoacyl-tRNA editing activity	1.22E-03
43	GO:0004148: dihydrolipoyl dehydrogenase activity	1.22E-03
44	GO:0016805: dipeptidase activity	1.22E-03
45	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.22E-03
46	GO:0004180: carboxypeptidase activity	1.22E-03
47	GO:0016851: magnesium chelatase activity	1.76E-03
48	GO:0052656: L-isoleucine transaminase activity	1.76E-03
49	GO:0052654: L-leucine transaminase activity	1.76E-03
50	GO:0052655: L-valine transaminase activity	1.76E-03
51	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.76E-03
52	GO:0043621: protein self-association	2.35E-03
53	GO:0004084: branched-chain-amino-acid transaminase activity	2.37E-03
54	GO:0004335: galactokinase activity	2.37E-03
55	GO:0004659: prenyltransferase activity	2.37E-03
56	GO:0004519: endonuclease activity	2.95E-03
57	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.03E-03
58	GO:0005215: transporter activity	3.22E-03
59	GO:0008080: N-acetyltransferase activity	3.49E-03
60	GO:0016208: AMP binding	3.74E-03
61	GO:0035673: oligopeptide transmembrane transporter activity	3.74E-03
62	GO:2001070: starch binding	3.74E-03
63	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.74E-03
64	GO:0004526: ribonuclease P activity	3.74E-03
65	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.50E-03
66	GO:0008195: phosphatidate phosphatase activity	4.50E-03
67	GO:0000156: phosphorelay response regulator activity	4.91E-03
68	GO:0015035: protein disulfide oxidoreductase activity	5.05E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	6.17E-03
70	GO:0008173: RNA methyltransferase activity	7.08E-03
71	GO:0102483: scopolin beta-glucosidase activity	7.35E-03
72	GO:0071949: FAD binding	8.04E-03
73	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.04E-03
74	GO:0015238: drug transmembrane transporter activity	8.56E-03
75	GO:0004222: metalloendopeptidase activity	8.99E-03
76	GO:0003824: catalytic activity	9.53E-03
77	GO:0003723: RNA binding	9.85E-03
78	GO:0008047: enzyme activator activity	1.01E-02
79	GO:0008559: xenobiotic-transporting ATPase activity	1.12E-02
80	GO:0044183: protein binding involved in protein folding	1.12E-02
81	GO:0008422: beta-glucosidase activity	1.13E-02
82	GO:0000149: SNARE binding	1.13E-02
83	GO:0015198: oligopeptide transporter activity	1.23E-02
84	GO:0005484: SNAP receptor activity	1.34E-02
85	GO:0004089: carbonate dehydratase activity	1.34E-02
86	GO:0019888: protein phosphatase regulator activity	1.34E-02
87	GO:0008146: sulfotransferase activity	1.59E-02
88	GO:0005525: GTP binding	1.65E-02
89	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.71E-02
90	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.71E-02
91	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.71E-02
92	GO:0005528: FK506 binding	1.85E-02
93	GO:0016887: ATPase activity	1.91E-02
94	GO:0005345: purine nucleobase transmembrane transporter activity	1.98E-02
95	GO:0033612: receptor serine/threonine kinase binding	2.12E-02
96	GO:0003727: single-stranded RNA binding	2.55E-02
97	GO:0008514: organic anion transmembrane transporter activity	2.55E-02
98	GO:0004812: aminoacyl-tRNA ligase activity	2.70E-02
99	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.31E-02
100	GO:0005524: ATP binding	3.41E-02
101	GO:0016791: phosphatase activity	4.01E-02
102	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.14E-02
103	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.19E-02
104	GO:0005200: structural constituent of cytoskeleton	4.19E-02
105	GO:0015297: antiporter activity	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.26E-17
2	GO:0009570: chloroplast stroma	3.25E-08
3	GO:0009508: plastid chromosome	2.24E-06
4	GO:0009295: nucleoid	3.68E-06
5	GO:0009706: chloroplast inner membrane	1.39E-04
6	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.56E-04
7	GO:0009941: chloroplast envelope	9.24E-04
8	GO:0019897: extrinsic component of plasma membrane	1.22E-03
9	GO:0010007: magnesium chelatase complex	1.22E-03
10	GO:0031969: chloroplast membrane	1.28E-03
11	GO:0009535: chloroplast thylakoid membrane	2.04E-03
12	GO:0009534: chloroplast thylakoid	2.88E-03
13	GO:0043231: intracellular membrane-bounded organelle	3.03E-03
14	GO:0048226: Casparian strip	6.17E-03
15	GO:0012507: ER to Golgi transport vesicle membrane	6.17E-03
16	GO:0009501: amyloplast	6.17E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.04E-03
18	GO:0000159: protein phosphatase type 2A complex	1.12E-02
19	GO:0009536: plastid	1.18E-02
20	GO:0031201: SNARE complex	1.23E-02
21	GO:0016021: integral component of membrane	4.01E-02
22	GO:0005778: peroxisomal membrane	4.19E-02