co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G18090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901698: response to nitrogen compound	0.00E+00
2	GO:0046460: neutral lipid biosynthetic process	0.00E+00
3	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
4	GO:0000372: Group I intron splicing	0.00E+00
5	GO:0043972: histone H3-K23 acetylation	0.00E+00
6	GO:0033528: S-methylmethionine cycle	0.00E+00
7	GO:0043457: regulation of cellular respiration	0.00E+00
8	GO:0044154: histone H3-K14 acetylation	0.00E+00
9	GO:0051322: anaphase	1.15E-05
10	GO:0006508: proteolysis	5.34E-05
11	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.16E-04
12	GO:0043971: histone H3-K18 acetylation	1.16E-04
13	GO:0048657: anther wall tapetum cell differentiation	1.16E-04
14	GO:0000012: single strand break repair	1.16E-04
15	GO:0000066: mitochondrial ornithine transport	1.16E-04
16	GO:0051171: regulation of nitrogen compound metabolic process	1.16E-04
17	GO:0006435: threonyl-tRNA aminoacylation	2.69E-04
18	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.69E-04
19	GO:0071705: nitrogen compound transport	4.45E-04
20	GO:0001578: microtubule bundle formation	4.45E-04
21	GO:0045493: xylan catabolic process	4.45E-04
22	GO:0009800: cinnamic acid biosynthetic process	6.38E-04
23	GO:0010306: rhamnogalacturonan II biosynthetic process	6.38E-04
24	GO:0010255: glucose mediated signaling pathway	6.38E-04
25	GO:0006168: adenine salvage	6.38E-04
26	GO:0006166: purine ribonucleoside salvage	6.38E-04
27	GO:0048868: pollen tube development	7.67E-04
28	GO:0007020: microtubule nucleation	8.47E-04
29	GO:0071249: cellular response to nitrate	8.47E-04
30	GO:0006465: signal peptide processing	1.07E-03
31	GO:0046785: microtubule polymerization	1.07E-03
32	GO:0031365: N-terminal protein amino acid modification	1.07E-03
33	GO:0044209: AMP salvage	1.07E-03
34	GO:0000910: cytokinesis	1.26E-03
35	GO:0006559: L-phenylalanine catabolic process	1.31E-03
36	GO:0034389: lipid particle organization	1.56E-03
37	GO:0048528: post-embryonic root development	1.84E-03
38	GO:0006353: DNA-templated transcription, termination	2.13E-03
39	GO:0032508: DNA duplex unwinding	2.13E-03
40	GO:0045010: actin nucleation	2.13E-03
41	GO:0009827: plant-type cell wall modification	2.43E-03
42	GO:0044030: regulation of DNA methylation	2.43E-03
43	GO:0022900: electron transport chain	2.43E-03
44	GO:0019432: triglyceride biosynthetic process	2.74E-03
45	GO:0009821: alkaloid biosynthetic process	2.74E-03
46	GO:0000373: Group II intron splicing	2.74E-03
47	GO:0009086: methionine biosynthetic process	3.07E-03
48	GO:0010380: regulation of chlorophyll biosynthetic process	3.07E-03
49	GO:0008202: steroid metabolic process	3.07E-03
50	GO:0006259: DNA metabolic process	3.41E-03
51	GO:0006415: translational termination	3.76E-03
52	GO:0006265: DNA topological change	3.76E-03
53	GO:0015706: nitrate transport	4.13E-03
54	GO:0030036: actin cytoskeleton organization	4.50E-03
55	GO:0009767: photosynthetic electron transport chain	4.50E-03
56	GO:0010207: photosystem II assembly	4.89E-03
57	GO:0006302: double-strand break repair	4.89E-03
58	GO:0080188: RNA-directed DNA methylation	5.29E-03
59	GO:0010167: response to nitrate	5.29E-03
60	GO:0090351: seedling development	5.29E-03
61	GO:0006071: glycerol metabolic process	5.70E-03
62	GO:0010187: negative regulation of seed germination	6.12E-03
63	GO:0006289: nucleotide-excision repair	6.12E-03
64	GO:0043622: cortical microtubule organization	6.56E-03
65	GO:0010073: meristem maintenance	6.56E-03
66	GO:0006825: copper ion transport	6.56E-03
67	GO:0009269: response to desiccation	7.00E-03
68	GO:0015992: proton transport	7.00E-03
69	GO:0006730: one-carbon metabolic process	7.46E-03
70	GO:0031348: negative regulation of defense response	7.46E-03
71	GO:0080092: regulation of pollen tube growth	7.46E-03
72	GO:0019748: secondary metabolic process	7.46E-03
73	GO:0010584: pollen exine formation	8.40E-03
74	GO:0048443: stamen development	8.40E-03
75	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.88E-03
76	GO:0009451: RNA modification	9.43E-03
77	GO:0045489: pectin biosynthetic process	9.89E-03
78	GO:0010197: polar nucleus fusion	9.89E-03
79	GO:0046323: glucose import	9.89E-03
80	GO:0010268: brassinosteroid homeostasis	9.89E-03
81	GO:0007018: microtubule-based movement	1.04E-02
82	GO:0007059: chromosome segregation	1.04E-02
83	GO:0016132: brassinosteroid biosynthetic process	1.15E-02
84	GO:0007264: small GTPase mediated signal transduction	1.20E-02
85	GO:0010090: trichome morphogenesis	1.26E-02
86	GO:0016125: sterol metabolic process	1.31E-02
87	GO:0009911: positive regulation of flower development	1.49E-02
88	GO:0016126: sterol biosynthetic process	1.49E-02
89	GO:0009860: pollen tube growth	1.54E-02
90	GO:0010411: xyloglucan metabolic process	1.67E-02
91	GO:0048573: photoperiodism, flowering	1.67E-02
92	GO:0030244: cellulose biosynthetic process	1.80E-02
93	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.84E-02
94	GO:0009834: plant-type secondary cell wall biogenesis	1.92E-02
95	GO:0009631: cold acclimation	1.99E-02
96	GO:0009910: negative regulation of flower development	1.99E-02
97	GO:0045087: innate immune response	2.12E-02
98	GO:0009853: photorespiration	2.12E-02
99	GO:0009793: embryo development ending in seed dormancy	2.24E-02
100	GO:0006839: mitochondrial transport	2.33E-02
101	GO:0008283: cell proliferation	2.54E-02
102	GO:0006397: mRNA processing	2.74E-02
103	GO:0051603: proteolysis involved in cellular protein catabolic process	3.22E-02
104	GO:0010224: response to UV-B	3.22E-02
105	GO:0006096: glycolytic process	3.54E-02
106	GO:0048316: seed development	3.63E-02
107	GO:0009740: gibberellic acid mediated signaling pathway	3.87E-02
108	GO:0009553: embryo sac development	3.96E-02
109	GO:0046686: response to cadmium ion	4.37E-02
110	GO:0009058: biosynthetic process	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
2	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
3	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
4	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
5	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
6	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.16E-04
7	GO:0005290: L-histidine transmembrane transporter activity	1.16E-04
8	GO:0004008: copper-exporting ATPase activity	1.16E-04
9	GO:0004222: metalloendopeptidase activity	1.73E-04
10	GO:0000064: L-ornithine transmembrane transporter activity	2.69E-04
11	GO:0004829: threonine-tRNA ligase activity	2.69E-04
12	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	2.69E-04
13	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	2.69E-04
14	GO:0045548: phenylalanine ammonia-lyase activity	4.45E-04
15	GO:0004848: ureidoglycolate hydrolase activity	4.45E-04
16	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.45E-04
17	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	4.45E-04
18	GO:0016805: dipeptidase activity	4.45E-04
19	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	4.45E-04
20	GO:0008430: selenium binding	4.45E-04
21	GO:0000254: C-4 methylsterol oxidase activity	6.38E-04
22	GO:0005354: galactose transmembrane transporter activity	6.38E-04
23	GO:0015181: arginine transmembrane transporter activity	6.38E-04
24	GO:0009678: hydrogen-translocating pyrophosphatase activity	6.38E-04
25	GO:0003999: adenine phosphoribosyltransferase activity	6.38E-04
26	GO:0015189: L-lysine transmembrane transporter activity	6.38E-04
27	GO:0010385: double-stranded methylated DNA binding	8.47E-04
28	GO:0070628: proteasome binding	8.47E-04
29	GO:0009044: xylan 1,4-beta-xylosidase activity	8.47E-04
30	GO:0046556: alpha-L-arabinofuranosidase activity	8.47E-04
31	GO:0008237: metallopeptidase activity	1.19E-03
32	GO:0031593: polyubiquitin binding	1.31E-03
33	GO:0008017: microtubule binding	1.42E-03
34	GO:0009927: histidine phosphotransfer kinase activity	1.56E-03
35	GO:0003730: mRNA 3'-UTR binding	1.56E-03
36	GO:0004144: diacylglycerol O-acyltransferase activity	1.56E-03
37	GO:0004656: procollagen-proline 4-dioxygenase activity	1.56E-03
38	GO:0004427: inorganic diphosphatase activity	1.84E-03
39	GO:0008235: metalloexopeptidase activity	1.84E-03
40	GO:0003697: single-stranded DNA binding	2.18E-03
41	GO:0005375: copper ion transmembrane transporter activity	2.43E-03
42	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.43E-03
43	GO:0008142: oxysterol binding	2.43E-03
44	GO:0003747: translation release factor activity	2.74E-03
45	GO:0004185: serine-type carboxypeptidase activity	2.80E-03
46	GO:0016844: strictosidine synthase activity	3.07E-03
47	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.76E-03
48	GO:0004177: aminopeptidase activity	3.76E-03
49	GO:0003690: double-stranded DNA binding	3.89E-03
50	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.50E-03
51	GO:0031418: L-ascorbic acid binding	6.12E-03
52	GO:0043130: ubiquitin binding	6.12E-03
53	GO:0004176: ATP-dependent peptidase activity	7.00E-03
54	GO:0004402: histone acetyltransferase activity	9.38E-03
55	GO:0001085: RNA polymerase II transcription factor binding	9.89E-03
56	GO:0004527: exonuclease activity	9.89E-03
57	GO:0008536: Ran GTPase binding	9.89E-03
58	GO:0005355: glucose transmembrane transporter activity	1.04E-02
59	GO:0048038: quinone binding	1.15E-02
60	GO:0003684: damaged DNA binding	1.31E-02
61	GO:0016413: O-acetyltransferase activity	1.43E-02
62	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.47E-02
63	GO:0003682: chromatin binding	1.51E-02
64	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.99E-02
65	GO:0042393: histone binding	2.33E-02
66	GO:0005506: iron ion binding	2.47E-02
67	GO:0051537: 2 iron, 2 sulfur cluster binding	2.69E-02
68	GO:0004519: endonuclease activity	2.85E-02
69	GO:0003777: microtubule motor activity	3.38E-02
70	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.63E-02
71	GO:0016887: ATPase activity	4.05E-02
72	GO:0004672: protein kinase activity	4.06E-02
73	GO:0019843: rRNA binding	4.74E-02
74	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	1.16E-04
2	GO:0009574: preprophase band	2.47E-04
3	GO:0009507: chloroplast	2.57E-04
4	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	8.47E-04
5	GO:0005802: trans-Golgi network	1.01E-03
6	GO:0072686: mitotic spindle	1.07E-03
7	GO:0005768: endosome	1.25E-03
8	GO:0031209: SCAR complex	1.31E-03
9	GO:0010005: cortical microtubule, transverse to long axis	1.56E-03
10	GO:0009505: plant-type cell wall	2.24E-03
11	GO:0005811: lipid particle	2.43E-03
12	GO:0005874: microtubule	2.92E-03
13	GO:0005856: cytoskeleton	3.14E-03
14	GO:0016324: apical plasma membrane	3.41E-03
15	GO:0055028: cortical microtubule	3.41E-03
16	GO:0005938: cell cortex	4.50E-03
17	GO:0005578: proteinaceous extracellular matrix	4.50E-03
18	GO:0009532: plastid stroma	7.00E-03
19	GO:0009524: phragmoplast	7.04E-03
20	GO:0005871: kinesin complex	8.88E-03
21	GO:0005789: endoplasmic reticulum membrane	1.20E-02
22	GO:0009295: nucleoid	1.37E-02
23	GO:0030529: intracellular ribonucleoprotein complex	1.49E-02
24	GO:0005667: transcription factor complex	1.61E-02
25	GO:0005819: spindle	2.26E-02
26	GO:0009536: plastid	3.25E-02
27	GO:0009706: chloroplast inner membrane	4.04E-02
28	GO:0048046: apoplast	4.32E-02