Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G17668

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
2GO:0071000: response to magnetism0.00E+00
3GO:0009583: detection of light stimulus0.00E+00
4GO:0033231: carbohydrate export0.00E+00
5GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
6GO:0000372: Group I intron splicing0.00E+00
7GO:0006573: valine metabolic process0.00E+00
8GO:0033528: S-methylmethionine cycle0.00E+00
9GO:0006114: glycerol biosynthetic process0.00E+00
10GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0070125: mitochondrial translational elongation0.00E+00
13GO:0070979: protein K11-linked ubiquitination0.00E+00
14GO:0010081: regulation of inflorescence meristem growth0.00E+00
15GO:1900871: chloroplast mRNA modification7.89E-06
16GO:0009793: embryo development ending in seed dormancy1.75E-05
17GO:0000373: Group II intron splicing3.56E-05
18GO:0009451: RNA modification1.30E-04
19GO:0010207: photosystem II assembly1.39E-04
20GO:0009658: chloroplast organization3.31E-04
21GO:0051510: regulation of unidimensional cell growth3.99E-04
22GO:0015755: fructose transport4.21E-04
23GO:0009090: homoserine biosynthetic process4.21E-04
24GO:0043489: RNA stabilization4.21E-04
25GO:0000012: single strand break repair4.21E-04
26GO:0043266: regulation of potassium ion transport4.21E-04
27GO:1902025: nitrate import4.21E-04
28GO:0010080: regulation of floral meristem growth4.21E-04
29GO:0006551: leucine metabolic process4.21E-04
30GO:0072387: flavin adenine dinucleotide metabolic process4.21E-04
31GO:0043087: regulation of GTPase activity4.21E-04
32GO:2000021: regulation of ion homeostasis4.21E-04
33GO:0006436: tryptophanyl-tRNA aminoacylation4.21E-04
34GO:0090548: response to nitrate starvation4.21E-04
35GO:0000066: mitochondrial ornithine transport4.21E-04
36GO:0034757: negative regulation of iron ion transport4.21E-04
37GO:0006419: alanyl-tRNA aminoacylation4.21E-04
38GO:1902334: fructose export from vacuole to cytoplasm4.21E-04
39GO:0048564: photosystem I assembly4.99E-04
40GO:0032544: plastid translation6.09E-04
41GO:0071482: cellular response to light stimulus6.09E-04
42GO:0009086: methionine biosynthetic process8.60E-04
43GO:1900865: chloroplast RNA modification8.60E-04
44GO:0060359: response to ammonium ion9.10E-04
45GO:0048255: mRNA stabilization9.10E-04
46GO:0010617: circadian regulation of calcium ion oscillation9.10E-04
47GO:0010271: regulation of chlorophyll catabolic process9.10E-04
48GO:0006432: phenylalanyl-tRNA aminoacylation9.10E-04
49GO:0006435: threonyl-tRNA aminoacylation9.10E-04
50GO:0099402: plant organ development9.10E-04
51GO:0080009: mRNA methylation9.10E-04
52GO:0006420: arginyl-tRNA aminoacylation9.10E-04
53GO:0010343: singlet oxygen-mediated programmed cell death9.10E-04
54GO:1901529: positive regulation of anion channel activity9.10E-04
55GO:0010582: floral meristem determinacy1.32E-03
56GO:0031145: anaphase-promoting complex-dependent catabolic process1.48E-03
57GO:0010022: meristem determinacy1.48E-03
58GO:1901672: positive regulation of systemic acquired resistance1.48E-03
59GO:0006696: ergosterol biosynthetic process1.48E-03
60GO:0043157: response to cation stress1.48E-03
61GO:0030029: actin filament-based process1.48E-03
62GO:0045910: negative regulation of DNA recombination1.48E-03
63GO:0080117: secondary growth1.48E-03
64GO:1902448: positive regulation of shade avoidance1.48E-03
65GO:1901332: negative regulation of lateral root development2.14E-03
66GO:0042989: sequestering of actin monomers2.14E-03
67GO:2001141: regulation of RNA biosynthetic process2.14E-03
68GO:0009067: aspartate family amino acid biosynthetic process2.14E-03
69GO:0051513: regulation of monopolar cell growth2.14E-03
70GO:0009102: biotin biosynthetic process2.14E-03
71GO:0030071: regulation of mitotic metaphase/anaphase transition2.14E-03
72GO:0051639: actin filament network formation2.14E-03
73GO:0010239: chloroplast mRNA processing2.14E-03
74GO:0009800: cinnamic acid biosynthetic process2.14E-03
75GO:0008295: spermidine biosynthetic process2.88E-03
76GO:1902347: response to strigolactone2.88E-03
77GO:0051781: positive regulation of cell division2.88E-03
78GO:0051764: actin crosslink formation2.88E-03
79GO:0048442: sepal development2.88E-03
80GO:0051322: anaphase2.88E-03
81GO:0030041: actin filament polymerization3.68E-03
82GO:0009696: salicylic acid metabolic process3.68E-03
83GO:0010117: photoprotection3.68E-03
84GO:0046283: anthocyanin-containing compound metabolic process3.68E-03
85GO:0031365: N-terminal protein amino acid modification3.68E-03
86GO:0016123: xanthophyll biosynthetic process3.68E-03
87GO:0080110: sporopollenin biosynthetic process3.68E-03
88GO:0010158: abaxial cell fate specification3.68E-03
89GO:0032876: negative regulation of DNA endoreduplication3.68E-03
90GO:0016117: carotenoid biosynthetic process3.99E-03
91GO:0070417: cellular response to cold3.99E-03
92GO:0010087: phloem or xylem histogenesis4.31E-03
93GO:0016554: cytidine to uridine editing4.56E-03
94GO:0048831: regulation of shoot system development4.56E-03
95GO:0010190: cytochrome b6f complex assembly4.56E-03
96GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.56E-03
97GO:1901371: regulation of leaf morphogenesis4.56E-03
98GO:0006559: L-phenylalanine catabolic process4.56E-03
99GO:0006397: mRNA processing4.56E-03
100GO:0009959: negative gravitropism4.56E-03
101GO:0060918: auxin transport4.56E-03
102GO:0009646: response to absence of light5.00E-03
103GO:0010076: maintenance of floral meristem identity5.49E-03
104GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.49E-03
105GO:0009082: branched-chain amino acid biosynthetic process5.49E-03
106GO:0048509: regulation of meristem development5.49E-03
107GO:0009099: valine biosynthetic process5.49E-03
108GO:0009088: threonine biosynthetic process5.49E-03
109GO:0009648: photoperiodism5.49E-03
110GO:0010310: regulation of hydrogen peroxide metabolic process5.49E-03
111GO:0042372: phylloquinone biosynthetic process5.49E-03
112GO:0048316: seed development5.78E-03
113GO:0007264: small GTPase mediated signal transduction6.14E-03
114GO:0010098: suspensor development6.49E-03
115GO:0010050: vegetative phase change6.49E-03
116GO:0006400: tRNA modification6.49E-03
117GO:0015693: magnesium ion transport6.49E-03
118GO:0009850: auxin metabolic process7.55E-03
119GO:0042255: ribosome assembly7.55E-03
120GO:0006353: DNA-templated transcription, termination7.55E-03
121GO:0032875: regulation of DNA endoreduplication7.55E-03
122GO:0070413: trehalose metabolism in response to stress7.55E-03
123GO:0009827: plant-type cell wall modification8.67E-03
124GO:0009657: plastid organization8.67E-03
125GO:0009097: isoleucine biosynthetic process8.67E-03
126GO:0010206: photosystem II repair9.85E-03
127GO:0009817: defense response to fungus, incompatible interaction1.09E-02
128GO:0016571: histone methylation1.11E-02
129GO:0008202: steroid metabolic process1.11E-02
130GO:0016573: histone acetylation1.11E-02
131GO:1900426: positive regulation of defense response to bacterium1.11E-02
132GO:0009638: phototropism1.11E-02
133GO:0009416: response to light stimulus1.15E-02
134GO:0006995: cellular response to nitrogen starvation1.24E-02
135GO:0006535: cysteine biosynthetic process from serine1.24E-02
136GO:0048441: petal development1.24E-02
137GO:0006298: mismatch repair1.24E-02
138GO:0006259: DNA metabolic process1.24E-02
139GO:0009299: mRNA transcription1.24E-02
140GO:0006265: DNA topological change1.37E-02
141GO:0009089: lysine biosynthetic process via diaminopimelate1.37E-02
142GO:0006352: DNA-templated transcription, initiation1.37E-02
143GO:0006415: translational termination1.37E-02
144GO:0009750: response to fructose1.37E-02
145GO:0009637: response to blue light1.38E-02
146GO:0045037: protein import into chloroplast stroma1.51E-02
147GO:0006839: mitochondrial transport1.58E-02
148GO:0009785: blue light signaling pathway1.65E-02
149GO:0010075: regulation of meristem growth1.65E-02
150GO:0009725: response to hormone1.65E-02
151GO:0006094: gluconeogenesis1.65E-02
152GO:0008283: cell proliferation1.79E-02
153GO:0010114: response to red light1.79E-02
154GO:0048440: carpel development1.80E-02
155GO:0009266: response to temperature stimulus1.80E-02
156GO:0006302: double-strand break repair1.80E-02
157GO:0090351: seedling development1.95E-02
158GO:0009636: response to toxic substance2.01E-02
159GO:0030150: protein import into mitochondrial matrix2.27E-02
160GO:0006338: chromatin remodeling2.27E-02
161GO:0007010: cytoskeleton organization2.27E-02
162GO:0051017: actin filament bundle assembly2.27E-02
163GO:0006289: nucleotide-excision repair2.27E-02
164GO:2000377: regulation of reactive oxygen species metabolic process2.27E-02
165GO:0005992: trehalose biosynthetic process2.27E-02
166GO:0019344: cysteine biosynthetic process2.27E-02
167GO:0006364: rRNA processing2.41E-02
168GO:0006418: tRNA aminoacylation for protein translation2.43E-02
169GO:0010073: meristem maintenance2.43E-02
170GO:0015992: proton transport2.60E-02
171GO:0051260: protein homooligomerization2.60E-02
172GO:0035428: hexose transmembrane transport2.78E-02
173GO:0016226: iron-sulfur cluster assembly2.78E-02
174GO:0071215: cellular response to abscisic acid stimulus2.96E-02
175GO:0048443: stamen development3.14E-02
176GO:0019722: calcium-mediated signaling3.14E-02
177GO:0010584: pollen exine formation3.14E-02
178GO:0008033: tRNA processing3.51E-02
179GO:0034220: ion transmembrane transport3.51E-02
180GO:0010118: stomatal movement3.51E-02
181GO:0006396: RNA processing3.54E-02
182GO:0045489: pectin biosynthetic process3.70E-02
183GO:0046323: glucose import3.70E-02
184GO:0010268: brassinosteroid homeostasis3.70E-02
185GO:0009958: positive gravitropism3.70E-02
186GO:0007018: microtubule-based movement3.90E-02
187GO:0042752: regulation of circadian rhythm3.90E-02
188GO:0007059: chromosome segregation3.90E-02
189GO:0000302: response to reactive oxygen species4.30E-02
190GO:0016132: brassinosteroid biosynthetic process4.30E-02
191GO:0016032: viral process4.51E-02
192GO:0032502: developmental process4.51E-02
193GO:0009630: gravitropism4.51E-02
194GO:0009845: seed germination4.64E-02
195GO:0032259: methylation4.91E-02
196GO:0006464: cellular protein modification process4.93E-02
197GO:0006914: autophagy4.93E-02
198GO:0016125: sterol metabolic process4.93E-02
RankGO TermAdjusted P value
1GO:0050613: delta14-sterol reductase activity0.00E+00
2GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
3GO:0008710: 8-amino-7-oxononanoate synthase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0015284: fructose uniporter activity0.00E+00
6GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
7GO:0043136: glycerol-3-phosphatase activity0.00E+00
8GO:0000121: glycerol-1-phosphatase activity0.00E+00
9GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
10GO:0019144: ADP-sugar diphosphatase activity0.00E+00
11GO:0003723: RNA binding1.41E-06
12GO:0004519: endonuclease activity3.46E-04
13GO:0080042: ADP-glucose pyrophosphohydrolase activity4.21E-04
14GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.21E-04
15GO:0004813: alanine-tRNA ligase activity4.21E-04
16GO:0005290: L-histidine transmembrane transporter activity4.21E-04
17GO:0003984: acetolactate synthase activity4.21E-04
18GO:0051996: squalene synthase activity4.21E-04
19GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity4.21E-04
20GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.21E-04
21GO:0004830: tryptophan-tRNA ligase activity4.21E-04
22GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity4.21E-04
23GO:0016776: phosphotransferase activity, phosphate group as acceptor4.21E-04
24GO:0003690: double-stranded DNA binding8.43E-04
25GO:0008805: carbon-monoxide oxygenase activity9.10E-04
26GO:0004829: threonine-tRNA ligase activity9.10E-04
27GO:0000064: L-ornithine transmembrane transporter activity9.10E-04
28GO:0005353: fructose transmembrane transporter activity9.10E-04
29GO:0004826: phenylalanine-tRNA ligase activity9.10E-04
30GO:0004412: homoserine dehydrogenase activity9.10E-04
31GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity9.10E-04
32GO:0050736: O-malonyltransferase activity9.10E-04
33GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.10E-04
34GO:0009884: cytokinin receptor activity9.10E-04
35GO:0050017: L-3-cyanoalanine synthase activity9.10E-04
36GO:0017118: lipoyltransferase activity9.10E-04
37GO:0080041: ADP-ribose pyrophosphohydrolase activity9.10E-04
38GO:0043425: bHLH transcription factor binding9.10E-04
39GO:0004814: arginine-tRNA ligase activity9.10E-04
40GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity9.10E-04
41GO:0004047: aminomethyltransferase activity9.10E-04
42GO:0004766: spermidine synthase activity9.10E-04
43GO:0016597: amino acid binding1.09E-03
44GO:0000049: tRNA binding1.32E-03
45GO:0045548: phenylalanine ammonia-lyase activity1.48E-03
46GO:0032549: ribonucleoside binding1.48E-03
47GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.48E-03
48GO:0004148: dihydrolipoyl dehydrogenase activity1.48E-03
49GO:0016805: dipeptidase activity1.48E-03
50GO:0005034: osmosensor activity1.48E-03
51GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.68E-03
52GO:0008266: poly(U) RNA binding1.68E-03
53GO:0009678: hydrogen-translocating pyrophosphatase activity2.14E-03
54GO:0016149: translation release factor activity, codon specific2.14E-03
55GO:0015181: arginine transmembrane transporter activity2.14E-03
56GO:0017172: cysteine dioxygenase activity2.14E-03
57GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.14E-03
58GO:0009882: blue light photoreceptor activity2.14E-03
59GO:0080031: methyl salicylate esterase activity2.14E-03
60GO:0004300: enoyl-CoA hydratase activity2.14E-03
61GO:0001872: (1->3)-beta-D-glucan binding2.14E-03
62GO:0015189: L-lysine transmembrane transporter activity2.14E-03
63GO:0004072: aspartate kinase activity2.14E-03
64GO:0042277: peptide binding2.88E-03
65GO:0001053: plastid sigma factor activity2.88E-03
66GO:0070628: proteasome binding2.88E-03
67GO:0016987: sigma factor activity2.88E-03
68GO:0003785: actin monomer binding3.68E-03
69GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.68E-03
70GO:0030983: mismatched DNA binding4.56E-03
71GO:0080030: methyl indole-3-acetate esterase activity4.56E-03
72GO:0031593: polyubiquitin binding4.56E-03
73GO:0004656: procollagen-proline 4-dioxygenase activity5.49E-03
74GO:0019900: kinase binding5.49E-03
75GO:0004124: cysteine synthase activity5.49E-03
76GO:0008235: metalloexopeptidase activity6.49E-03
77GO:0004427: inorganic diphosphatase activity6.49E-03
78GO:0003684: damaged DNA binding6.97E-03
79GO:0043022: ribosome binding7.55E-03
80GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity8.67E-03
81GO:0008142: oxysterol binding8.67E-03
82GO:0019843: rRNA binding9.36E-03
83GO:0071949: FAD binding9.85E-03
84GO:0003747: translation release factor activity9.85E-03
85GO:0004672: protein kinase activity1.11E-02
86GO:0004673: protein histidine kinase activity1.24E-02
87GO:0004805: trehalose-phosphatase activity1.24E-02
88GO:0005089: Rho guanyl-nucleotide exchange factor activity1.37E-02
89GO:0001054: RNA polymerase I activity1.37E-02
90GO:0004177: aminopeptidase activity1.37E-02
91GO:0003746: translation elongation factor activity1.38E-02
92GO:0003697: single-stranded DNA binding1.38E-02
93GO:0015266: protein channel activity1.65E-02
94GO:0015095: magnesium ion transmembrane transporter activity1.65E-02
95GO:0000155: phosphorelay sensor kinase activity1.65E-02
96GO:0009982: pseudouridine synthase activity1.65E-02
97GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.86E-02
98GO:0051119: sugar transmembrane transporter activity1.95E-02
99GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.11E-02
100GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.11E-02
101GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.11E-02
102GO:0031418: L-ascorbic acid binding2.27E-02
103GO:0043130: ubiquitin binding2.27E-02
104GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.41E-02
105GO:0051087: chaperone binding2.43E-02
106GO:0043424: protein histidine kinase binding2.43E-02
107GO:0005525: GTP binding2.70E-02
108GO:0030570: pectate lyase activity2.96E-02
109GO:0003727: single-stranded RNA binding3.14E-02
110GO:0004812: aminoacyl-tRNA ligase activity3.32E-02
111GO:0004527: exonuclease activity3.70E-02
112GO:0008536: Ran GTPase binding3.70E-02
113GO:0050662: coenzyme binding3.90E-02
114GO:0010181: FMN binding3.90E-02
115GO:0005355: glucose transmembrane transporter activity3.90E-02
116GO:0019901: protein kinase binding4.10E-02
117GO:0048038: quinone binding4.30E-02
118GO:0004518: nuclease activity4.51E-02
119GO:0051015: actin filament binding4.72E-02
120GO:0030170: pyridoxal phosphate binding4.76E-02
121GO:0016740: transferase activity4.77E-02
122GO:0016791: phosphatase activity4.93E-02
RankGO TermAdjusted P value
1GO:0009537: proplastid0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009507: chloroplast1.17E-20
4GO:0009570: chloroplast stroma2.39E-05
5GO:0030529: intracellular ribonucleoprotein complex1.44E-04
6GO:0009501: amyloplast4.99E-04
7GO:0016604: nuclear body8.60E-04
8GO:0009513: etioplast9.10E-04
9GO:0009509: chromoplast1.48E-03
10GO:0016605: PML body1.48E-03
11GO:0009574: preprophase band1.49E-03
12GO:0031969: chloroplast membrane2.13E-03
13GO:0032432: actin filament bundle2.14E-03
14GO:0042651: thylakoid membrane2.58E-03
15GO:0009536: plastid2.66E-03
16GO:0005759: mitochondrial matrix2.72E-03
17GO:0030663: COPI-coated vesicle membrane2.88E-03
18GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.88E-03
19GO:0042807: central vacuole6.49E-03
20GO:0009295: nucleoid7.41E-03
21GO:0031305: integral component of mitochondrial inner membrane7.55E-03
22GO:0000326: protein storage vacuole8.67E-03
23GO:0005680: anaphase-promoting complex9.85E-03
24GO:0005736: DNA-directed RNA polymerase I complex9.85E-03
25GO:0009535: chloroplast thylakoid membrane1.09E-02
26GO:0030125: clathrin vesicle coat1.24E-02
27GO:0005884: actin filament1.37E-02
28GO:0009705: plant-type vacuole membrane1.41E-02
29GO:0000311: plastid large ribosomal subunit1.51E-02
30GO:0009508: plastid chromosome1.65E-02
31GO:0005938: cell cortex1.65E-02
32GO:0005578: proteinaceous extracellular matrix1.65E-02
33GO:0030176: integral component of endoplasmic reticulum membrane1.95E-02
34GO:0046658: anchored component of plasma membrane2.02E-02
35GO:0009532: plastid stroma2.60E-02
36GO:0005739: mitochondrion2.94E-02
37GO:0015629: actin cytoskeleton2.96E-02
38GO:0005744: mitochondrial inner membrane presequence translocase complex3.14E-02
39GO:0005871: kinesin complex3.32E-02
40GO:0010287: plastoglobule4.07E-02
41GO:0031965: nuclear membrane4.10E-02
42GO:0005623: cell4.41E-02
43GO:0009579: thylakoid4.63E-02
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Gene type



Gene DE type