co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G17470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905177: tracheary element differentiation	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
4	GO:0098586: cellular response to virus	0.00E+00
5	GO:0010203: response to very low fluence red light stimulus	0.00E+00
6	GO:0007037: vacuolar phosphate transport	0.00E+00
7	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
8	GO:0006114: glycerol biosynthetic process	0.00E+00
9	GO:0045038: protein import into chloroplast thylakoid membrane	2.11E-07
10	GO:2001141: regulation of RNA biosynthetic process	1.16E-05
11	GO:0009658: chloroplast organization	1.20E-04
12	GO:0071482: cellular response to light stimulus	1.56E-04
13	GO:0000012: single strand break repair	1.67E-04
14	GO:0043266: regulation of potassium ion transport	1.67E-04
15	GO:0000481: maturation of 5S rRNA	1.67E-04
16	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.67E-04
17	GO:0043087: regulation of GTPase activity	1.67E-04
18	GO:2000021: regulation of ion homeostasis	1.67E-04
19	GO:0051247: positive regulation of protein metabolic process	1.67E-04
20	GO:1902458: positive regulation of stomatal opening	1.67E-04
21	GO:0034337: RNA folding	1.67E-04
22	GO:2000905: negative regulation of starch metabolic process	1.67E-04
23	GO:0006419: alanyl-tRNA aminoacylation	1.67E-04
24	GO:0031426: polycistronic mRNA processing	1.67E-04
25	GO:0051775: response to redox state	1.67E-04
26	GO:0006352: DNA-templated transcription, initiation	3.13E-04
27	GO:1901959: positive regulation of cutin biosynthetic process	3.78E-04
28	GO:0000256: allantoin catabolic process	3.78E-04
29	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.78E-04
30	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.78E-04
31	GO:0046741: transport of virus in host, tissue to tissue	3.78E-04
32	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	3.78E-04
33	GO:1900871: chloroplast mRNA modification	3.78E-04
34	GO:0017006: protein-tetrapyrrole linkage	6.19E-04
35	GO:0010623: programmed cell death involved in cell development	6.19E-04
36	GO:0005977: glycogen metabolic process	6.19E-04
37	GO:0000913: preprophase band assembly	6.19E-04
38	GO:0031022: nuclear migration along microfilament	6.19E-04
39	GO:0048586: regulation of long-day photoperiodism, flowering	6.19E-04
40	GO:1904278: positive regulation of wax biosynthetic process	6.19E-04
41	GO:0010136: ureide catabolic process	6.19E-04
42	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	6.19E-04
43	GO:0043572: plastid fission	8.83E-04
44	GO:0046836: glycolipid transport	8.83E-04
45	GO:0006107: oxaloacetate metabolic process	8.83E-04
46	GO:0010239: chloroplast mRNA processing	8.83E-04
47	GO:0009584: detection of visible light	8.83E-04
48	GO:0006145: purine nucleobase catabolic process	8.83E-04
49	GO:0009226: nucleotide-sugar biosynthetic process	8.83E-04
50	GO:0009306: protein secretion	9.89E-04
51	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.07E-03
52	GO:0006734: NADH metabolic process	1.17E-03
53	GO:0010021: amylopectin biosynthetic process	1.17E-03
54	GO:0048442: sepal development	1.17E-03
55	GO:0051322: anaphase	1.17E-03
56	GO:0006661: phosphatidylinositol biosynthetic process	1.17E-03
57	GO:2000306: positive regulation of photomorphogenesis	1.17E-03
58	GO:0045723: positive regulation of fatty acid biosynthetic process	1.17E-03
59	GO:0010508: positive regulation of autophagy	1.17E-03
60	GO:0007018: microtubule-based movement	1.33E-03
61	GO:0009904: chloroplast accumulation movement	1.48E-03
62	GO:0016123: xanthophyll biosynthetic process	1.48E-03
63	GO:0080110: sporopollenin biosynthetic process	1.48E-03
64	GO:0009793: embryo development ending in seed dormancy	1.54E-03
65	GO:0032502: developmental process	1.62E-03
66	GO:0016032: viral process	1.62E-03
67	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.83E-03
68	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.83E-03
69	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.83E-03
70	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.83E-03
71	GO:0000910: cytokinesis	2.06E-03
72	GO:0017148: negative regulation of translation	2.19E-03
73	GO:0009903: chloroplast avoidance movement	2.19E-03
74	GO:0009612: response to mechanical stimulus	2.19E-03
75	GO:0010076: maintenance of floral meristem identity	2.19E-03
76	GO:0005975: carbohydrate metabolic process	2.20E-03
77	GO:0010029: regulation of seed germination	2.30E-03
78	GO:0009645: response to low light intensity stimulus	2.58E-03
79	GO:0006400: tRNA modification	2.58E-03
80	GO:0010161: red light signaling pathway	2.58E-03
81	GO:0009395: phospholipid catabolic process	2.58E-03
82	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.58E-03
83	GO:0009690: cytokinin metabolic process	2.99E-03
84	GO:0006605: protein targeting	2.99E-03
85	GO:0032508: DNA duplex unwinding	2.99E-03
86	GO:2000070: regulation of response to water deprivation	2.99E-03
87	GO:0042255: ribosome assembly	2.99E-03
88	GO:0006353: DNA-templated transcription, termination	2.99E-03
89	GO:0000373: Group II intron splicing	3.86E-03
90	GO:0046685: response to arsenic-containing substance	3.86E-03
91	GO:0009821: alkaloid biosynthetic process	3.86E-03
92	GO:0010206: photosystem II repair	3.86E-03
93	GO:0048507: meristem development	3.86E-03
94	GO:0009638: phototropism	4.33E-03
95	GO:0042546: cell wall biogenesis	4.80E-03
96	GO:0048441: petal development	4.81E-03
97	GO:0045037: protein import into chloroplast stroma	5.84E-03
98	GO:0006108: malate metabolic process	6.38E-03
99	GO:0009767: photosynthetic electron transport chain	6.38E-03
100	GO:0009887: animal organ morphogenesis	6.93E-03
101	GO:0006302: double-strand break repair	6.93E-03
102	GO:0048440: carpel development	6.93E-03
103	GO:0010020: chloroplast fission	6.93E-03
104	GO:0006096: glycolytic process	7.34E-03
105	GO:0090351: seedling development	7.50E-03
106	GO:0006833: water transport	8.10E-03
107	GO:0051302: regulation of cell division	9.33E-03
108	GO:0008299: isoprenoid biosynthetic process	9.33E-03
109	GO:0006629: lipid metabolic process	9.51E-03
110	GO:0010431: seed maturation	9.97E-03
111	GO:0031348: negative regulation of defense response	1.06E-02
112	GO:0006730: one-carbon metabolic process	1.06E-02
113	GO:0010089: xylem development	1.20E-02
114	GO:0010584: pollen exine formation	1.20E-02
115	GO:0048443: stamen development	1.20E-02
116	GO:0019722: calcium-mediated signaling	1.20E-02
117	GO:0016117: carotenoid biosynthetic process	1.27E-02
118	GO:0008033: tRNA processing	1.34E-02
119	GO:0034220: ion transmembrane transport	1.34E-02
120	GO:0009737: response to abscisic acid	1.38E-02
121	GO:0048868: pollen tube development	1.41E-02
122	GO:0010268: brassinosteroid homeostasis	1.41E-02
123	GO:0045489: pectin biosynthetic process	1.41E-02
124	GO:0006413: translational initiation	1.43E-02
125	GO:0007059: chromosome segregation	1.49E-02
126	GO:0019252: starch biosynthetic process	1.56E-02
127	GO:0008654: phospholipid biosynthetic process	1.56E-02
128	GO:0009791: post-embryonic development	1.56E-02
129	GO:0016132: brassinosteroid biosynthetic process	1.64E-02
130	GO:0000302: response to reactive oxygen species	1.64E-02
131	GO:0009630: gravitropism	1.72E-02
132	GO:0010583: response to cyclopentenone	1.72E-02
133	GO:0007166: cell surface receptor signaling pathway	1.75E-02
134	GO:0010468: regulation of gene expression	1.83E-02
135	GO:0016125: sterol metabolic process	1.88E-02
136	GO:0009738: abscisic acid-activated signaling pathway	1.89E-02
137	GO:0007267: cell-cell signaling	1.96E-02
138	GO:0010027: thylakoid membrane organization	2.13E-02
139	GO:0016126: sterol biosynthetic process	2.13E-02
140	GO:0010411: xyloglucan metabolic process	2.39E-02
141	GO:0016311: dephosphorylation	2.48E-02
142	GO:0018298: protein-chromophore linkage	2.57E-02
143	GO:0006508: proteolysis	2.57E-02
144	GO:0046686: response to cadmium ion	2.64E-02
145	GO:0010218: response to far red light	2.76E-02
146	GO:0009637: response to blue light	3.05E-02
147	GO:0009853: photorespiration	3.05E-02
148	GO:0045087: innate immune response	3.05E-02
149	GO:0006099: tricarboxylic acid cycle	3.14E-02
150	GO:0015979: photosynthesis	3.36E-02
151	GO:0010114: response to red light	3.65E-02
152	GO:0009640: photomorphogenesis	3.65E-02
153	GO:0009644: response to high light intensity	3.86E-02
154	GO:0006855: drug transmembrane transport	4.07E-02
155	GO:0000165: MAPK cascade	4.18E-02
156	GO:0042538: hyperosmotic salinity response	4.29E-02
157	GO:0006364: rRNA processing	4.51E-02
158	GO:0009585: red, far-red light phototransduction	4.51E-02
159	GO:0051603: proteolysis involved in cellular protein catabolic process	4.62E-02
160	GO:0071555: cell wall organization	4.72E-02
161	GO:0006468: protein phosphorylation	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005048: signal sequence binding	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
5	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
6	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
7	GO:0050613: delta14-sterol reductase activity	0.00E+00
8	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
9	GO:0001053: plastid sigma factor activity	2.16E-05
10	GO:0016987: sigma factor activity	2.16E-05
11	GO:0004462: lactoylglutathione lyase activity	5.21E-05
12	GO:0043022: ribosome binding	1.25E-04
13	GO:0008746: NAD(P)+ transhydrogenase activity	1.67E-04
14	GO:0031516: far-red light photoreceptor activity	1.67E-04
15	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	1.67E-04
16	GO:0004813: alanine-tRNA ligase activity	1.67E-04
17	GO:0010291: carotene beta-ring hydroxylase activity	3.78E-04
18	GO:0009883: red or far-red light photoreceptor activity	3.78E-04
19	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	3.78E-04
20	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.78E-04
21	GO:0019156: isoamylase activity	3.78E-04
22	GO:0048531: beta-1,3-galactosyltransferase activity	3.78E-04
23	GO:0004802: transketolase activity	3.78E-04
24	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.63E-04
25	GO:0008020: G-protein coupled photoreceptor activity	6.19E-04
26	GO:0070402: NADPH binding	6.19E-04
27	GO:0004180: carboxypeptidase activity	6.19E-04
28	GO:0017089: glycolipid transporter activity	8.83E-04
29	GO:0048027: mRNA 5'-UTR binding	8.83E-04
30	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	8.83E-04
31	GO:0051861: glycolipid binding	1.17E-03
32	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.17E-03
33	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.17E-03
34	GO:0008374: O-acyltransferase activity	1.48E-03
35	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.48E-03
36	GO:0016615: malate dehydrogenase activity	1.83E-03
37	GO:0004556: alpha-amylase activity	1.83E-03
38	GO:0004672: protein kinase activity	2.06E-03
39	GO:0030060: L-malate dehydrogenase activity	2.19E-03
40	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.32E-03
41	GO:0008017: microtubule binding	2.69E-03
42	GO:0008236: serine-type peptidase activity	2.70E-03
43	GO:0008312: 7S RNA binding	2.99E-03
44	GO:0003993: acid phosphatase activity	3.75E-03
45	GO:0030955: potassium ion binding	4.33E-03
46	GO:0016844: strictosidine synthase activity	4.33E-03
47	GO:0004743: pyruvate kinase activity	4.33E-03
48	GO:0004673: protein histidine kinase activity	4.81E-03
49	GO:0000049: tRNA binding	5.84E-03
50	GO:0000976: transcription regulatory region sequence-specific DNA binding	5.84E-03
51	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.21E-03
52	GO:0000155: phosphorelay sensor kinase activity	6.38E-03
53	GO:0008081: phosphoric diester hydrolase activity	6.38E-03
54	GO:0003690: double-stranded DNA binding	6.43E-03
55	GO:0003777: microtubule motor activity	6.87E-03
56	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.15E-03
57	GO:0003729: mRNA binding	7.40E-03
58	GO:0004190: aspartic-type endopeptidase activity	7.50E-03
59	GO:0004871: signal transducer activity	7.73E-03
60	GO:0003924: GTPase activity	9.51E-03
61	GO:0005525: GTP binding	9.98E-03
62	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.14E-02
63	GO:0003727: single-stranded RNA binding	1.20E-02
64	GO:0016829: lyase activity	1.20E-02
65	GO:0015144: carbohydrate transmembrane transporter activity	1.33E-02
66	GO:0004527: exonuclease activity	1.41E-02
67	GO:0008080: N-acetyltransferase activity	1.41E-02
68	GO:0016853: isomerase activity	1.49E-02
69	GO:0050662: coenzyme binding	1.49E-02
70	GO:0005351: sugar:proton symporter activity	1.50E-02
71	GO:0019901: protein kinase binding	1.56E-02
72	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.64E-02
73	GO:0048038: quinone binding	1.64E-02
74	GO:0003743: translation initiation factor activity	1.79E-02
75	GO:0042802: identical protein binding	1.95E-02
76	GO:0016597: amino acid binding	2.04E-02
77	GO:0016491: oxidoreductase activity	2.06E-02
78	GO:0003723: RNA binding	2.10E-02
79	GO:0015250: water channel activity	2.13E-02
80	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.39E-02
81	GO:0016788: hydrolase activity, acting on ester bonds	2.42E-02
82	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.57E-02
83	GO:0005096: GTPase activator activity	2.67E-02
84	GO:0015238: drug transmembrane transporter activity	2.67E-02
85	GO:0004222: metalloendopeptidase activity	2.76E-02
86	GO:0030145: manganese ion binding	2.85E-02
87	GO:0003697: single-stranded DNA binding	3.05E-02
88	GO:0004185: serine-type carboxypeptidase activity	3.65E-02
89	GO:0035091: phosphatidylinositol binding	3.86E-02
90	GO:0005515: protein binding	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	2.49E-16
3	GO:0080085: signal recognition particle, chloroplast targeting	1.35E-06
4	GO:0009570: chloroplast stroma	6.43E-05
5	GO:0009535: chloroplast thylakoid membrane	1.04E-04
6	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.56E-04
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.91E-04
8	GO:0009941: chloroplast envelope	2.70E-04
9	GO:0009574: preprophase band	4.10E-04
10	GO:0033281: TAT protein transport complex	6.19E-04
11	GO:0046658: anchored component of plasma membrane	6.24E-04
12	GO:0005871: kinesin complex	1.07E-03
13	GO:0005773: vacuole	1.16E-03
14	GO:0030660: Golgi-associated vesicle membrane	1.17E-03
15	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.17E-03
16	GO:0005623: cell	1.74E-03
17	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.99E-03
18	GO:0005886: plasma membrane	3.52E-03
19	GO:0042644: chloroplast nucleoid	3.86E-03
20	GO:0016604: nuclear body	4.33E-03
21	GO:0005765: lysosomal membrane	5.32E-03
22	GO:0005874: microtubule	5.55E-03
23	GO:0032040: small-subunit processome	5.84E-03
24	GO:0009579: thylakoid	6.16E-03
25	GO:0030176: integral component of endoplasmic reticulum membrane	7.50E-03
26	GO:0009706: chloroplast inner membrane	8.84E-03
27	GO:0031225: anchored component of membrane	9.21E-03
28	GO:0009654: photosystem II oxygen evolving complex	9.33E-03
29	GO:0042651: thylakoid membrane	9.33E-03
30	GO:0009543: chloroplast thylakoid lumen	1.11E-02
31	GO:0009524: phragmoplast	1.17E-02
32	GO:0009705: plant-type vacuole membrane	1.53E-02
33	GO:0019898: extrinsic component of membrane	1.56E-02
34	GO:0009504: cell plate	1.56E-02
35	GO:0005694: chromosome	1.72E-02
36	GO:0009505: plant-type cell wall	1.92E-02
37	GO:0030529: intracellular ribonucleoprotein complex	2.13E-02
38	GO:0019005: SCF ubiquitin ligase complex	2.57E-02
39	GO:0009707: chloroplast outer membrane	2.57E-02
40	GO:0031969: chloroplast membrane	2.95E-02
41	GO:0005819: spindle	3.24E-02
42	GO:0031977: thylakoid lumen	3.44E-02
43	GO:0005622: intracellular	4.03E-02