co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G17170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
2	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:0070979: protein K11-linked ubiquitination	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
8	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
9	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
10	GO:0006573: valine metabolic process	0.00E+00
11	GO:0000372: Group I intron splicing	0.00E+00
12	GO:1900871: chloroplast mRNA modification	5.92E-06
13	GO:0010239: chloroplast mRNA processing	4.58E-05
14	GO:0045038: protein import into chloroplast thylakoid membrane	1.27E-04
15	GO:0080110: sporopollenin biosynthetic process	1.27E-04
16	GO:0009658: chloroplast organization	2.03E-04
17	GO:0009099: valine biosynthetic process	2.46E-04
18	GO:0042372: phylloquinone biosynthetic process	2.46E-04
19	GO:0009082: branched-chain amino acid biosynthetic process	2.46E-04
20	GO:0043266: regulation of potassium ion transport	3.63E-04
21	GO:0010063: positive regulation of trichoblast fate specification	3.63E-04
22	GO:0006551: leucine metabolic process	3.63E-04
23	GO:2000021: regulation of ion homeostasis	3.63E-04
24	GO:0006436: tryptophanyl-tRNA aminoacylation	3.63E-04
25	GO:0048363: mucilage pectin metabolic process	3.63E-04
26	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	3.63E-04
27	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.63E-04
28	GO:0009090: homoserine biosynthetic process	3.63E-04
29	GO:0043489: RNA stabilization	3.63E-04
30	GO:0008033: tRNA processing	3.84E-04
31	GO:0006353: DNA-templated transcription, termination	4.01E-04
32	GO:0009451: RNA modification	4.74E-04
33	GO:0071482: cellular response to light stimulus	4.91E-04
34	GO:0009097: isoleucine biosynthetic process	4.91E-04
35	GO:0000373: Group II intron splicing	5.89E-04
36	GO:0009098: leucine biosynthetic process	6.94E-04
37	GO:1900865: chloroplast RNA modification	6.94E-04
38	GO:0071668: plant-type cell wall assembly	7.89E-04
39	GO:0001682: tRNA 5'-leader removal	7.89E-04
40	GO:0010024: phytochromobilin biosynthetic process	7.89E-04
41	GO:0060359: response to ammonium ion	7.89E-04
42	GO:0048255: mRNA stabilization	7.89E-04
43	GO:0006432: phenylalanyl-tRNA aminoacylation	7.89E-04
44	GO:0006696: ergosterol biosynthetic process	1.28E-03
45	GO:0043157: response to cation stress	1.28E-03
46	GO:0045910: negative regulation of DNA recombination	1.28E-03
47	GO:0006788: heme oxidation	1.28E-03
48	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.28E-03
49	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.28E-03
50	GO:0016556: mRNA modification	1.84E-03
51	GO:2001141: regulation of RNA biosynthetic process	1.84E-03
52	GO:0009067: aspartate family amino acid biosynthetic process	1.84E-03
53	GO:0010071: root meristem specification	1.84E-03
54	GO:0051513: regulation of monopolar cell growth	1.84E-03
55	GO:0009102: biotin biosynthetic process	1.84E-03
56	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.84E-03
57	GO:0019048: modulation by virus of host morphology or physiology	1.84E-03
58	GO:0010306: rhamnogalacturonan II biosynthetic process	1.84E-03
59	GO:0042989: sequestering of actin monomers	1.84E-03
60	GO:0031048: chromatin silencing by small RNA	1.84E-03
61	GO:1990019: protein storage vacuole organization	1.84E-03
62	GO:0046739: transport of virus in multicellular host	1.84E-03
63	GO:0051781: positive regulation of cell division	2.47E-03
64	GO:0042274: ribosomal small subunit biogenesis	2.47E-03
65	GO:0048442: sepal development	2.47E-03
66	GO:0051567: histone H3-K9 methylation	2.47E-03
67	GO:0008295: spermidine biosynthetic process	2.47E-03
68	GO:0010584: pollen exine formation	2.95E-03
69	GO:0016123: xanthophyll biosynthetic process	3.16E-03
70	GO:0010158: abaxial cell fate specification	3.16E-03
71	GO:0032876: negative regulation of DNA endoreduplication	3.16E-03
72	GO:0030041: actin filament polymerization	3.16E-03
73	GO:0016117: carotenoid biosynthetic process	3.20E-03
74	GO:0010305: leaf vascular tissue pattern formation	3.72E-03
75	GO:0016458: gene silencing	3.91E-03
76	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.91E-03
77	GO:0009959: negative gravitropism	3.91E-03
78	GO:0016554: cytidine to uridine editing	3.91E-03
79	GO:0010190: cytochrome b6f complex assembly	3.91E-03
80	GO:0032973: amino acid export	3.91E-03
81	GO:0033365: protein localization to organelle	3.91E-03
82	GO:0048316: seed development	4.35E-03
83	GO:0030488: tRNA methylation	4.71E-03
84	GO:0009088: threonine biosynthetic process	4.71E-03
85	GO:0009648: photoperiodism	4.71E-03
86	GO:0010076: maintenance of floral meristem identity	4.71E-03
87	GO:1901259: chloroplast rRNA processing	4.71E-03
88	GO:0017148: negative regulation of translation	4.71E-03
89	GO:0051510: regulation of unidimensional cell growth	5.56E-03
90	GO:0015693: magnesium ion transport	5.56E-03
91	GO:0009395: phospholipid catabolic process	5.56E-03
92	GO:0043090: amino acid import	5.56E-03
93	GO:0010050: vegetative phase change	5.56E-03
94	GO:0048437: floral organ development	5.56E-03
95	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.56E-03
96	GO:0010098: suspensor development	5.56E-03
97	GO:0032875: regulation of DNA endoreduplication	6.46E-03
98	GO:0000105: histidine biosynthetic process	6.46E-03
99	GO:0048564: photosystem I assembly	6.46E-03
100	GO:0042255: ribosome assembly	6.46E-03
101	GO:0009850: auxin metabolic process	6.46E-03
102	GO:0070413: trehalose metabolism in response to stress	6.46E-03
103	GO:0009793: embryo development ending in seed dormancy	6.99E-03
104	GO:0032544: plastid translation	7.41E-03
105	GO:0010497: plasmodesmata-mediated intercellular transport	7.41E-03
106	GO:0009657: plastid organization	7.41E-03
107	GO:0009416: response to light stimulus	7.81E-03
108	GO:0000902: cell morphogenesis	8.41E-03
109	GO:0080144: amino acid homeostasis	8.41E-03
110	GO:0048507: meristem development	8.41E-03
111	GO:0048481: plant ovule development	8.69E-03
112	GO:0009086: methionine biosynthetic process	9.46E-03
113	GO:0048354: mucilage biosynthetic process involved in seed coat development	9.46E-03
114	GO:0030422: production of siRNA involved in RNA interference	1.05E-02
115	GO:0006298: mismatch repair	1.05E-02
116	GO:0006259: DNA metabolic process	1.05E-02
117	GO:0048441: petal development	1.05E-02
118	GO:0006352: DNA-templated transcription, initiation	1.17E-02
119	GO:0006397: mRNA processing	1.17E-02
120	GO:0006265: DNA topological change	1.17E-02
121	GO:0009089: lysine biosynthetic process via diaminopimelate	1.17E-02
122	GO:0043085: positive regulation of catalytic activity	1.17E-02
123	GO:0006415: translational termination	1.17E-02
124	GO:0006839: mitochondrial transport	1.26E-02
125	GO:0005983: starch catabolic process	1.29E-02
126	GO:0010582: floral meristem determinacy	1.29E-02
127	GO:0009691: cytokinin biosynthetic process	1.41E-02
128	GO:0009718: anthocyanin-containing compound biosynthetic process	1.41E-02
129	GO:0048440: carpel development	1.53E-02
130	GO:0010207: photosystem II assembly	1.53E-02
131	GO:0090351: seedling development	1.66E-02
132	GO:0010030: positive regulation of seed germination	1.66E-02
133	GO:0000162: tryptophan biosynthetic process	1.80E-02
134	GO:0051017: actin filament bundle assembly	1.93E-02
135	GO:0005992: trehalose biosynthetic process	1.93E-02
136	GO:0030150: protein import into mitochondrial matrix	1.93E-02
137	GO:0007010: cytoskeleton organization	1.93E-02
138	GO:0008299: isoprenoid biosynthetic process	2.07E-02
139	GO:0006418: tRNA aminoacylation for protein translation	2.07E-02
140	GO:0006306: DNA methylation	2.22E-02
141	GO:0006730: one-carbon metabolic process	2.37E-02
142	GO:0048443: stamen development	2.67E-02
143	GO:0019722: calcium-mediated signaling	2.67E-02
144	GO:0042127: regulation of cell proliferation	2.67E-02
145	GO:0055114: oxidation-reduction process	2.74E-02
146	GO:0006396: RNA processing	2.83E-02
147	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.83E-02
148	GO:0000271: polysaccharide biosynthetic process	2.99E-02
149	GO:0034220: ion transmembrane transport	2.99E-02
150	GO:0010087: phloem or xylem histogenesis	2.99E-02
151	GO:0042631: cellular response to water deprivation	2.99E-02
152	GO:0006662: glycerol ether metabolic process	3.16E-02
153	GO:0048868: pollen tube development	3.16E-02
154	GO:0006342: chromatin silencing	3.16E-02
155	GO:0045489: pectin biosynthetic process	3.16E-02
156	GO:0009958: positive gravitropism	3.16E-02
157	GO:0048544: recognition of pollen	3.32E-02
158	GO:0007059: chromosome segregation	3.32E-02
159	GO:0000302: response to reactive oxygen species	3.67E-02
160	GO:0032502: developmental process	3.84E-02
161	GO:0009630: gravitropism	3.84E-02
162	GO:0007264: small GTPase mediated signal transduction	3.84E-02
163	GO:0016032: viral process	3.84E-02
164	GO:0006914: autophagy	4.20E-02
165	GO:0006464: cellular protein modification process	4.20E-02
166	GO:0007267: cell-cell signaling	4.39E-02
167	GO:0051607: defense response to virus	4.57E-02
168	GO:0010027: thylakoid membrane organization	4.76E-02
169	GO:0016126: sterol biosynthetic process	4.76E-02
170	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.95E-02
171	GO:0009816: defense response to bacterium, incompatible interaction	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
7	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
8	GO:0050613: delta14-sterol reductase activity	0.00E+00
9	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
10	GO:0046905: phytoene synthase activity	0.00E+00
11	GO:0003723: RNA binding	1.71E-04
12	GO:0004519: endonuclease activity	2.01E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.63E-04
14	GO:0004830: tryptophan-tRNA ligase activity	3.63E-04
15	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	3.63E-04
16	GO:0016776: phosphotransferase activity, phosphate group as acceptor	3.63E-04
17	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.63E-04
18	GO:0080042: ADP-glucose pyrophosphohydrolase activity	3.63E-04
19	GO:0050308: sugar-phosphatase activity	3.63E-04
20	GO:0019203: carbohydrate phosphatase activity	3.63E-04
21	GO:0052381: tRNA dimethylallyltransferase activity	3.63E-04
22	GO:0051996: squalene synthase activity	3.63E-04
23	GO:0003984: acetolactate synthase activity	3.63E-04
24	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.89E-04
25	GO:0003862: 3-isopropylmalate dehydrogenase activity	7.89E-04
26	GO:0017118: lipoyltransferase activity	7.89E-04
27	GO:0080041: ADP-ribose pyrophosphohydrolase activity	7.89E-04
28	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	7.89E-04
29	GO:0004766: spermidine synthase activity	7.89E-04
30	GO:0008805: carbon-monoxide oxygenase activity	7.89E-04
31	GO:0004826: phenylalanine-tRNA ligase activity	7.89E-04
32	GO:0004412: homoserine dehydrogenase activity	7.89E-04
33	GO:0015266: protein channel activity	1.20E-03
34	GO:0016805: dipeptidase activity	1.28E-03
35	GO:0070402: NADPH binding	1.28E-03
36	GO:0004180: carboxypeptidase activity	1.28E-03
37	GO:0004148: dihydrolipoyl dehydrogenase activity	1.28E-03
38	GO:0008266: poly(U) RNA binding	1.36E-03
39	GO:0052656: L-isoleucine transaminase activity	1.84E-03
40	GO:0043023: ribosomal large subunit binding	1.84E-03
41	GO:0052654: L-leucine transaminase activity	1.84E-03
42	GO:0004300: enoyl-CoA hydratase activity	1.84E-03
43	GO:0052655: L-valine transaminase activity	1.84E-03
44	GO:0001872: (1->3)-beta-D-glucan binding	1.84E-03
45	GO:0004072: aspartate kinase activity	1.84E-03
46	GO:0016149: translation release factor activity, codon specific	1.84E-03
47	GO:0035197: siRNA binding	1.84E-03
48	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.84E-03
49	GO:0017172: cysteine dioxygenase activity	1.84E-03
50	GO:0004392: heme oxygenase (decyclizing) activity	2.47E-03
51	GO:0001053: plastid sigma factor activity	2.47E-03
52	GO:0005319: lipid transporter activity	2.47E-03
53	GO:0016987: sigma factor activity	2.47E-03
54	GO:0004084: branched-chain-amino-acid transaminase activity	2.47E-03
55	GO:0003785: actin monomer binding	3.16E-03
56	GO:2001070: starch binding	3.91E-03
57	GO:0030983: mismatched DNA binding	3.91E-03
58	GO:0004526: ribonuclease P activity	3.91E-03
59	GO:0016208: AMP binding	3.91E-03
60	GO:0050662: coenzyme binding	4.00E-03
61	GO:0004656: procollagen-proline 4-dioxygenase activity	4.71E-03
62	GO:0016597: amino acid binding	6.28E-03
63	GO:0008312: 7S RNA binding	6.46E-03
64	GO:0043022: ribosome binding	6.46E-03
65	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	7.41E-03
66	GO:0003747: translation release factor activity	8.41E-03
67	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.41E-03
68	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.69E-03
69	GO:0004222: metalloendopeptidase activity	9.60E-03
70	GO:0004805: trehalose-phosphatase activity	1.05E-02
71	GO:0008047: enzyme activator activity	1.05E-02
72	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.17E-02
73	GO:0004521: endoribonuclease activity	1.29E-02
74	GO:0000049: tRNA binding	1.29E-02
75	GO:0015095: magnesium ion transmembrane transporter activity	1.41E-02
76	GO:0009982: pseudouridine synthase activity	1.41E-02
77	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.53E-02
78	GO:0016491: oxidoreductase activity	1.54E-02
79	GO:0051536: iron-sulfur cluster binding	1.93E-02
80	GO:0031418: L-ascorbic acid binding	1.93E-02
81	GO:0003729: mRNA binding	1.94E-02
82	GO:0003690: double-stranded DNA binding	2.00E-02
83	GO:0051087: chaperone binding	2.07E-02
84	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.37E-02
85	GO:0003727: single-stranded RNA binding	2.67E-02
86	GO:0047134: protein-disulfide reductase activity	2.83E-02
87	GO:0004812: aminoacyl-tRNA ligase activity	2.83E-02
88	GO:0004791: thioredoxin-disulfide reductase activity	3.32E-02
89	GO:0016853: isomerase activity	3.32E-02
90	GO:0010181: FMN binding	3.32E-02
91	GO:0019843: rRNA binding	3.44E-02
92	GO:0003924: GTPase activity	3.94E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.02E-02
94	GO:0051015: actin filament binding	4.02E-02
95	GO:0003684: damaged DNA binding	4.20E-02
96	GO:0016791: phosphatase activity	4.20E-02
97	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.39E-02
98	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.41E-02
99	GO:0015250: water channel activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009507: chloroplast	4.20E-31
4	GO:0009570: chloroplast stroma	5.10E-11
5	GO:0080085: signal recognition particle, chloroplast targeting	5.92E-06
6	GO:0030529: intracellular ribonucleoprotein complex	9.68E-05
7	GO:0043190: ATP-binding cassette (ABC) transporter complex	3.63E-04
8	GO:0009501: amyloplast	4.01E-04
9	GO:0009941: chloroplast envelope	4.50E-04
10	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.91E-04
11	GO:0009295: nucleoid	7.68E-04
12	GO:0009513: etioplast	7.89E-04
13	GO:0009508: plastid chromosome	1.20E-03
14	GO:0009509: chromoplast	1.28E-03
15	GO:0031969: chloroplast membrane	1.44E-03
16	GO:0005719: nuclear euchromatin	1.84E-03
17	GO:0005759: mitochondrial matrix	1.94E-03
18	GO:0042651: thylakoid membrane	2.07E-03
19	GO:0030663: COPI-coated vesicle membrane	2.47E-03
20	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.47E-03
21	GO:0015629: actin cytoskeleton	2.71E-03
22	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.95E-03
23	GO:0009579: thylakoid	3.22E-03
24	GO:0042807: central vacuole	5.56E-03
25	GO:0031305: integral component of mitochondrial inner membrane	6.46E-03
26	GO:0000326: protein storage vacuole	7.41E-03
27	GO:0005680: anaphase-promoting complex	8.41E-03
28	GO:0015030: Cajal body	9.46E-03
29	GO:0016604: nuclear body	9.46E-03
30	GO:0030125: clathrin vesicle coat	1.05E-02
31	GO:0000311: plastid large ribosomal subunit	1.29E-02
32	GO:0005938: cell cortex	1.41E-02
33	GO:0005856: cytoskeleton	1.61E-02
34	GO:0030176: integral component of endoplasmic reticulum membrane	1.66E-02
35	GO:0009535: chloroplast thylakoid membrane	1.68E-02
36	GO:0009654: photosystem II oxygen evolving complex	2.07E-02
37	GO:0009532: plastid stroma	2.22E-02
38	GO:0009706: chloroplast inner membrane	2.75E-02
39	GO:0010287: plastoglobule	3.26E-02
40	GO:0019898: extrinsic component of membrane	3.49E-02
41	GO:0031965: nuclear membrane	3.49E-02
42	GO:0005743: mitochondrial inner membrane	3.60E-02
43	GO:0009536: plastid	3.68E-02
44	GO:0005778: peroxisomal membrane	4.39E-02
45	GO:0043231: intracellular membrane-bounded organelle	4.44E-02
46	GO:0009705: plant-type vacuole membrane	4.73E-02