co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010055: atrichoblast differentiation	0.00E+00
2	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
3	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
4	GO:1902001: fatty acid transmembrane transport	0.00E+00
5	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
6	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
7	GO:0005993: trehalose catabolic process	0.00E+00
8	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
9	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
10	GO:0046865: terpenoid transport	0.00E+00
11	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
12	GO:0006983: ER overload response	0.00E+00
13	GO:1902009: positive regulation of toxin transport	0.00E+00
14	GO:0051553: flavone biosynthetic process	0.00E+00
15	GO:0009751: response to salicylic acid	2.65E-05
16	GO:0002237: response to molecule of bacterial origin	1.02E-04
17	GO:0009863: salicylic acid mediated signaling pathway	1.66E-04
18	GO:0034975: protein folding in endoplasmic reticulum	3.65E-04
19	GO:1990641: response to iron ion starvation	3.65E-04
20	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	3.65E-04
21	GO:0050691: regulation of defense response to virus by host	3.65E-04
22	GO:1902065: response to L-glutamate	3.65E-04
23	GO:0032107: regulation of response to nutrient levels	3.65E-04
24	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.05E-04
25	GO:0015031: protein transport	5.73E-04
26	GO:0009617: response to bacterium	6.37E-04
27	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	7.02E-04
28	GO:0008202: steroid metabolic process	7.02E-04
29	GO:0010155: regulation of proton transport	7.94E-04
30	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	7.94E-04
31	GO:0006024: glycosaminoglycan biosynthetic process	7.94E-04
32	GO:0055088: lipid homeostasis	7.94E-04
33	GO:0015908: fatty acid transport	7.94E-04
34	GO:0006101: citrate metabolic process	7.94E-04
35	GO:0043066: negative regulation of apoptotic process	7.94E-04
36	GO:0015012: heparan sulfate proteoglycan biosynthetic process	7.94E-04
37	GO:0071668: plant-type cell wall assembly	7.94E-04
38	GO:0080183: response to photooxidative stress	7.94E-04
39	GO:0042742: defense response to bacterium	9.79E-04
40	GO:0000266: mitochondrial fission	1.07E-03
41	GO:0015783: GDP-fucose transport	1.29E-03
42	GO:0010476: gibberellin mediated signaling pathway	1.29E-03
43	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.29E-03
44	GO:0009410: response to xenobiotic stimulus	1.29E-03
45	GO:0015692: lead ion transport	1.29E-03
46	GO:0052546: cell wall pectin metabolic process	1.29E-03
47	GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	1.29E-03
48	GO:0080168: abscisic acid transport	1.29E-03
49	GO:0080163: regulation of protein serine/threonine phosphatase activity	1.29E-03
50	GO:0071398: cellular response to fatty acid	1.29E-03
51	GO:0006065: UDP-glucuronate biosynthetic process	1.29E-03
52	GO:0010200: response to chitin	1.55E-03
53	GO:0045087: innate immune response	1.69E-03
54	GO:0000162: tryptophan biosynthetic process	1.71E-03
55	GO:0002239: response to oomycetes	1.85E-03
56	GO:0010731: protein glutathionylation	1.85E-03
57	GO:0071323: cellular response to chitin	1.85E-03
58	GO:0080024: indolebutyric acid metabolic process	1.85E-03
59	GO:0055070: copper ion homeostasis	1.85E-03
60	GO:0001676: long-chain fatty acid metabolic process	1.85E-03
61	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.85E-03
62	GO:0006631: fatty acid metabolic process	2.11E-03
63	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	2.49E-03
64	GO:0022622: root system development	2.49E-03
65	GO:0006621: protein retention in ER lumen	2.49E-03
66	GO:0015867: ATP transport	2.49E-03
67	GO:0009814: defense response, incompatible interaction	2.51E-03
68	GO:0006470: protein dephosphorylation	2.79E-03
69	GO:0031347: regulation of defense response	2.98E-03
70	GO:0006097: glyoxylate cycle	3.18E-03
71	GO:0015866: ADP transport	3.93E-03
72	GO:0010256: endomembrane system organization	3.93E-03
73	GO:1900425: negative regulation of defense response to bacterium	3.93E-03
74	GO:0033365: protein localization to organelle	3.93E-03
75	GO:0009759: indole glucosinolate biosynthetic process	3.93E-03
76	GO:0006623: protein targeting to vacuole	4.34E-03
77	GO:0002229: defense response to oomycetes	4.65E-03
78	GO:0010193: response to ozone	4.65E-03
79	GO:0045926: negative regulation of growth	4.74E-03
80	GO:0031930: mitochondria-nucleus signaling pathway	4.74E-03
81	GO:0048444: floral organ morphogenesis	4.74E-03
82	GO:0009620: response to fungus	4.77E-03
83	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	5.60E-03
84	GO:0046470: phosphatidylcholine metabolic process	5.60E-03
85	GO:1900056: negative regulation of leaf senescence	5.60E-03
86	GO:1900057: positive regulation of leaf senescence	5.60E-03
87	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	5.60E-03
88	GO:1902074: response to salt	5.60E-03
89	GO:0010044: response to aluminum ion	5.60E-03
90	GO:0006464: cellular protein modification process	5.63E-03
91	GO:0006102: isocitrate metabolic process	6.51E-03
92	GO:0016559: peroxisome fission	6.51E-03
93	GO:0009850: auxin metabolic process	6.51E-03
94	GO:0006605: protein targeting	6.51E-03
95	GO:0031540: regulation of anthocyanin biosynthetic process	6.51E-03
96	GO:0010029: regulation of seed germination	7.11E-03
97	GO:0009816: defense response to bacterium, incompatible interaction	7.11E-03
98	GO:0010208: pollen wall assembly	7.47E-03
99	GO:0010120: camalexin biosynthetic process	7.47E-03
100	GO:0009738: abscisic acid-activated signaling pathway	7.51E-03
101	GO:0015780: nucleotide-sugar transport	8.47E-03
102	GO:0009835: fruit ripening	8.47E-03
103	GO:0007338: single fertilization	8.47E-03
104	GO:0010112: regulation of systemic acquired resistance	8.47E-03
105	GO:0009056: catabolic process	8.47E-03
106	GO:0043067: regulation of programmed cell death	9.53E-03
107	GO:0009086: methionine biosynthetic process	9.53E-03
108	GO:0010629: negative regulation of gene expression	1.06E-02
109	GO:0051555: flavonol biosynthetic process	1.06E-02
110	GO:0043069: negative regulation of programmed cell death	1.06E-02
111	GO:0009867: jasmonic acid mediated signaling pathway	1.12E-02
112	GO:0009684: indoleacetic acid biosynthetic process	1.18E-02
113	GO:0000038: very long-chain fatty acid metabolic process	1.18E-02
114	GO:0019684: photosynthesis, light reaction	1.18E-02
115	GO:0009089: lysine biosynthetic process via diaminopimelate	1.18E-02
116	GO:0007166: cell surface receptor signaling pathway	1.28E-02
117	GO:0045037: protein import into chloroplast stroma	1.30E-02
118	GO:0007275: multicellular organism development	1.31E-02
119	GO:0006829: zinc II ion transport	1.42E-02
120	GO:2000012: regulation of auxin polar transport	1.42E-02
121	GO:0010102: lateral root morphogenesis	1.42E-02
122	GO:0018107: peptidyl-threonine phosphorylation	1.42E-02
123	GO:0051707: response to other organism	1.44E-02
124	GO:0009636: response to toxic substance	1.62E-02
125	GO:0046688: response to copper ion	1.68E-02
126	GO:0090351: seedling development	1.68E-02
127	GO:0070588: calcium ion transmembrane transport	1.68E-02
128	GO:0006855: drug transmembrane transport	1.69E-02
129	GO:0000027: ribosomal large subunit assembly	1.95E-02
130	GO:0030150: protein import into mitochondrial matrix	1.95E-02
131	GO:0045333: cellular respiration	1.95E-02
132	GO:0080147: root hair cell development	1.95E-02
133	GO:0006289: nucleotide-excision repair	1.95E-02
134	GO:0010224: response to UV-B	2.02E-02
135	GO:0006825: copper ion transport	2.09E-02
136	GO:0006334: nucleosome assembly	2.24E-02
137	GO:0009269: response to desiccation	2.24E-02
138	GO:0009723: response to ethylene	2.25E-02
139	GO:0016226: iron-sulfur cluster assembly	2.38E-02
140	GO:0031348: negative regulation of defense response	2.38E-02
141	GO:0071456: cellular response to hypoxia	2.38E-02
142	GO:0006012: galactose metabolic process	2.54E-02
143	GO:0009693: ethylene biosynthetic process	2.54E-02
144	GO:0009414: response to water deprivation	2.56E-02
145	GO:0016192: vesicle-mediated transport	2.62E-02
146	GO:0009306: protein secretion	2.69E-02
147	GO:0018105: peptidyl-serine phosphorylation	2.86E-02
148	GO:0006886: intracellular protein transport	3.20E-02
149	GO:0071554: cell wall organization or biogenesis	3.69E-02
150	GO:0006635: fatty acid beta-oxidation	3.69E-02
151	GO:0009737: response to abscisic acid	3.85E-02
152	GO:0032502: developmental process	3.87E-02
153	GO:0030163: protein catabolic process	4.05E-02
154	GO:0009567: double fertilization forming a zygote and endosperm	4.23E-02
155	GO:0009753: response to jasmonic acid	4.35E-02
156	GO:0051607: defense response to virus	4.61E-02
157	GO:0010150: leaf senescence	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
2	GO:0033759: flavone synthase activity	0.00E+00
3	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
4	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
5	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
6	GO:0005212: structural constituent of eye lens	0.00E+00
7	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
8	GO:0005046: KDEL sequence binding	0.00E+00
9	GO:0034338: short-chain carboxylesterase activity	0.00E+00
10	GO:0004834: tryptophan synthase activity	8.19E-05
11	GO:0031418: L-ascorbic acid binding	1.66E-04
12	GO:0005509: calcium ion binding	2.35E-04
13	GO:0102391: decanoate--CoA ligase activity	2.49E-04
14	GO:0004656: procollagen-proline 4-dioxygenase activity	2.49E-04
15	GO:0004467: long-chain fatty acid-CoA ligase activity	3.23E-04
16	GO:0015927: trehalase activity	3.65E-04
17	GO:0047150: betaine-homocysteine S-methyltransferase activity	3.65E-04
18	GO:0015245: fatty acid transporter activity	3.65E-04
19	GO:0010285: L,L-diaminopimelate aminotransferase activity	3.65E-04
20	GO:0016920: pyroglutamyl-peptidase activity	3.65E-04
21	GO:0008142: oxysterol binding	4.96E-04
22	GO:0004630: phospholipase D activity	4.96E-04
23	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	4.96E-04
24	GO:0003994: aconitate hydratase activity	7.94E-04
25	GO:0032934: sterol binding	7.94E-04
26	GO:0050736: O-malonyltransferase activity	7.94E-04
27	GO:0015036: disulfide oxidoreductase activity	7.94E-04
28	GO:0010331: gibberellin binding	7.94E-04
29	GO:0030247: polysaccharide binding	1.10E-03
30	GO:0005457: GDP-fucose transmembrane transporter activity	1.29E-03
31	GO:0003979: UDP-glucose 6-dehydrogenase activity	1.29E-03
32	GO:0016531: copper chaperone activity	1.29E-03
33	GO:0032403: protein complex binding	1.29E-03
34	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.69E-03
35	GO:0035529: NADH pyrophosphatase activity	1.85E-03
36	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.85E-03
37	GO:0001046: core promoter sequence-specific DNA binding	1.89E-03
38	GO:0046923: ER retention sequence binding	2.49E-03
39	GO:0009916: alternative oxidase activity	2.49E-03
40	GO:0046872: metal ion binding	2.68E-03
41	GO:0004623: phospholipase A2 activity	3.18E-03
42	GO:0005496: steroid binding	3.18E-03
43	GO:0047631: ADP-ribose diphosphatase activity	3.18E-03
44	GO:0000210: NAD+ diphosphatase activity	3.93E-03
45	GO:0015217: ADP transmembrane transporter activity	4.74E-03
46	GO:0003978: UDP-glucose 4-epimerase activity	4.74E-03
47	GO:0005347: ATP transmembrane transporter activity	4.74E-03
48	GO:0015035: protein disulfide oxidoreductase activity	5.56E-03
49	GO:0008320: protein transmembrane transporter activity	5.60E-03
50	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	5.99E-03
51	GO:0047893: flavonol 3-O-glucosyltransferase activity	6.51E-03
52	GO:0052747: sinapyl alcohol dehydrogenase activity	6.51E-03
53	GO:0004708: MAP kinase kinase activity	6.51E-03
54	GO:0004714: transmembrane receptor protein tyrosine kinase activity	6.51E-03
55	GO:0004806: triglyceride lipase activity	7.93E-03
56	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	8.47E-03
57	GO:0004722: protein serine/threonine phosphatase activity	9.30E-03
58	GO:0015297: antiporter activity	1.01E-02
59	GO:0004864: protein phosphatase inhibitor activity	1.06E-02
60	GO:0016740: transferase activity	1.12E-02
61	GO:0051539: 4 iron, 4 sulfur cluster binding	1.27E-02
62	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.30E-02
63	GO:0031072: heat shock protein binding	1.42E-02
64	GO:0005388: calcium-transporting ATPase activity	1.42E-02
65	GO:0005515: protein binding	1.50E-02
66	GO:0008061: chitin binding	1.68E-02
67	GO:0003712: transcription cofactor activity	1.68E-02
68	GO:0051287: NAD binding	1.75E-02
69	GO:0051536: iron-sulfur cluster binding	1.95E-02
70	GO:0043565: sequence-specific DNA binding	1.96E-02
71	GO:0008324: cation transmembrane transporter activity	2.09E-02
72	GO:0035251: UDP-glucosyltransferase activity	2.24E-02
73	GO:0004707: MAP kinase activity	2.24E-02
74	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.46E-02
75	GO:0008810: cellulase activity	2.54E-02
76	GO:0016874: ligase activity	2.62E-02
77	GO:0003756: protein disulfide isomerase activity	2.69E-02
78	GO:0005102: receptor binding	2.85E-02
79	GO:0046873: metal ion transmembrane transporter activity	3.18E-02
80	GO:0042803: protein homodimerization activity	3.26E-02
81	GO:0004872: receptor activity	3.52E-02
82	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.57E-02
83	GO:0030170: pyridoxal phosphate binding	3.85E-02
84	GO:0016787: hydrolase activity	3.89E-02
85	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.05E-02
86	GO:0008483: transaminase activity	4.42E-02
87	GO:0008237: metallopeptidase activity	4.42E-02
88	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.46E-02
89	GO:0016413: O-acetyltransferase activity	4.61E-02
90	GO:0016301: kinase activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	3.04E-06
2	GO:0005789: endoplasmic reticulum membrane	8.21E-05
3	GO:0005794: Golgi apparatus	2.19E-04
4	GO:0005801: cis-Golgi network	2.49E-04
5	GO:0030665: clathrin-coated vesicle membrane	7.02E-04
6	GO:0005783: endoplasmic reticulum	7.40E-04
7	GO:0031314: extrinsic component of mitochondrial inner membrane	7.94E-04
8	GO:0030134: ER to Golgi transport vesicle	7.94E-04
9	GO:0017119: Golgi transport complex	8.18E-04
10	GO:0030658: transport vesicle membrane	1.85E-03
11	GO:0031902: late endosome membrane	2.11E-03
12	GO:0005741: mitochondrial outer membrane	2.30E-03
13	GO:0009898: cytoplasmic side of plasma membrane	2.49E-03
14	GO:0005743: mitochondrial inner membrane	2.56E-03
15	GO:0000813: ESCRT I complex	3.18E-03
16	GO:0000164: protein phosphatase type 1 complex	3.18E-03
17	GO:0005802: trans-Golgi network	5.84E-03
18	GO:0005779: integral component of peroxisomal membrane	7.47E-03
19	GO:0005795: Golgi stack	1.68E-02
20	GO:0005737: cytoplasm	1.72E-02
21	GO:0005758: mitochondrial intermembrane space	1.95E-02
22	GO:0070469: respiratory chain	2.09E-02
23	GO:0005768: endosome	2.24E-02
24	GO:0031410: cytoplasmic vesicle	2.38E-02
25	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.69E-02
26	GO:0009706: chloroplast inner membrane	2.78E-02
27	GO:0005777: peroxisome	3.21E-02
28	GO:0009543: chloroplast thylakoid lumen	3.48E-02
29	GO:0019898: extrinsic component of membrane	3.52E-02
30	GO:0005623: cell	3.57E-02
31	GO:0005774: vacuolar membrane	4.17E-02
32	GO:0000139: Golgi membrane	4.40E-02
33	GO:0005778: peroxisomal membrane	4.42E-02