co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
2	GO:1905157: positive regulation of photosynthesis	0.00E+00
3	GO:0009069: serine family amino acid metabolic process	0.00E+00
4	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
5	GO:0061157: mRNA destabilization	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0070178: D-serine metabolic process	0.00E+00
8	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
9	GO:0017038: protein import	0.00E+00
10	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
11	GO:0042407: cristae formation	0.00E+00
12	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
13	GO:1901259: chloroplast rRNA processing	4.82E-08
14	GO:0009658: chloroplast organization	3.57E-06
15	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.16E-06
16	GO:0046739: transport of virus in multicellular host	4.74E-05
17	GO:0009955: adaxial/abaxial pattern specification	2.54E-04
18	GO:0042372: phylloquinone biosynthetic process	2.54E-04
19	GO:0048437: floral organ development	3.30E-04
20	GO:1904966: positive regulation of vitamin E biosynthetic process	3.70E-04
21	GO:0010480: microsporocyte differentiation	3.70E-04
22	GO:1904964: positive regulation of phytol biosynthetic process	3.70E-04
23	GO:0042371: vitamin K biosynthetic process	3.70E-04
24	GO:0043686: co-translational protein modification	3.70E-04
25	GO:0043007: maintenance of rDNA	3.70E-04
26	GO:0005991: trehalose metabolic process	3.70E-04
27	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	3.70E-04
28	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.70E-04
29	GO:0000476: maturation of 4.5S rRNA	3.70E-04
30	GO:0000967: rRNA 5'-end processing	3.70E-04
31	GO:0080112: seed growth	3.70E-04
32	GO:0005980: glycogen catabolic process	3.70E-04
33	GO:0030198: extracellular matrix organization	3.70E-04
34	GO:1905039: carboxylic acid transmembrane transport	3.70E-04
35	GO:1905200: gibberellic acid transmembrane transport	3.70E-04
36	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	3.70E-04
37	GO:0006353: DNA-templated transcription, termination	4.14E-04
38	GO:0032544: plastid translation	5.06E-04
39	GO:0010497: plasmodesmata-mediated intercellular transport	5.06E-04
40	GO:0009657: plastid organization	5.06E-04
41	GO:0031425: chloroplast RNA processing	7.16E-04
42	GO:0006423: cysteinyl-tRNA aminoacylation	8.05E-04
43	GO:0018026: peptidyl-lysine monomethylation	8.05E-04
44	GO:1900033: negative regulation of trichome patterning	8.05E-04
45	GO:0042325: regulation of phosphorylation	8.05E-04
46	GO:1904143: positive regulation of carotenoid biosynthetic process	8.05E-04
47	GO:0006568: tryptophan metabolic process	8.05E-04
48	GO:0034470: ncRNA processing	8.05E-04
49	GO:0010027: thylakoid membrane organization	9.22E-04
50	GO:0019684: photosynthesis, light reaction	9.61E-04
51	GO:0009773: photosynthetic electron transport in photosystem I	9.61E-04
52	GO:0009742: brassinosteroid mediated signaling pathway	1.12E-03
53	GO:0034051: negative regulation of plant-type hypersensitive response	1.30E-03
54	GO:0033591: response to L-ascorbic acid	1.30E-03
55	GO:0006954: inflammatory response	1.30E-03
56	GO:0006168: adenine salvage	1.88E-03
57	GO:0016556: mRNA modification	1.88E-03
58	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.88E-03
59	GO:0006166: purine ribonucleoside salvage	1.88E-03
60	GO:0009102: biotin biosynthetic process	1.88E-03
61	GO:0009152: purine ribonucleotide biosynthetic process	1.88E-03
62	GO:0010601: positive regulation of auxin biosynthetic process	1.88E-03
63	GO:0046653: tetrahydrofolate metabolic process	1.88E-03
64	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.88E-03
65	GO:0010306: rhamnogalacturonan II biosynthetic process	1.88E-03
66	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.88E-03
67	GO:0010731: protein glutathionylation	1.88E-03
68	GO:0048629: trichome patterning	2.52E-03
69	GO:0010109: regulation of photosynthesis	2.52E-03
70	GO:0042274: ribosomal small subunit biogenesis	2.52E-03
71	GO:0022622: root system development	2.52E-03
72	GO:0006221: pyrimidine nucleotide biosynthetic process	2.52E-03
73	GO:0006730: one-carbon metabolic process	2.57E-03
74	GO:0009686: gibberellin biosynthetic process	2.80E-03
75	GO:0016042: lipid catabolic process	2.87E-03
76	GO:0032543: mitochondrial translation	3.23E-03
77	GO:0006564: L-serine biosynthetic process	3.23E-03
78	GO:0010236: plastoquinone biosynthetic process	3.23E-03
79	GO:0031365: N-terminal protein amino acid modification	3.23E-03
80	GO:0009107: lipoate biosynthetic process	3.23E-03
81	GO:0044209: AMP salvage	3.23E-03
82	GO:0006662: glycerol ether metabolic process	3.84E-03
83	GO:0010197: polar nucleus fusion	3.84E-03
84	GO:0009958: positive gravitropism	3.84E-03
85	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.99E-03
86	GO:0000741: karyogamy	3.99E-03
87	GO:0009643: photosynthetic acclimation	3.99E-03
88	GO:0006563: L-serine metabolic process	3.99E-03
89	GO:0010405: arabinogalactan protein metabolic process	3.99E-03
90	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.99E-03
91	GO:0009959: negative gravitropism	3.99E-03
92	GO:0016554: cytidine to uridine editing	3.99E-03
93	GO:0042793: transcription from plastid promoter	3.99E-03
94	GO:0032973: amino acid export	3.99E-03
95	GO:0009646: response to absence of light	4.13E-03
96	GO:0048280: vesicle fusion with Golgi apparatus	4.81E-03
97	GO:0080086: stamen filament development	4.81E-03
98	GO:0042026: protein refolding	4.81E-03
99	GO:0006458: 'de novo' protein folding	4.81E-03
100	GO:0032502: developmental process	5.07E-03
101	GO:1901657: glycosyl compound metabolic process	5.40E-03
102	GO:0032880: regulation of protein localization	5.68E-03
103	GO:0010161: red light signaling pathway	5.68E-03
104	GO:0009772: photosynthetic electron transport in photosystem II	5.68E-03
105	GO:0043090: amino acid import	5.68E-03
106	GO:0042255: ribosome assembly	6.61E-03
107	GO:0046620: regulation of organ growth	6.61E-03
108	GO:0006605: protein targeting	6.61E-03
109	GO:0070413: trehalose metabolism in response to stress	6.61E-03
110	GO:0010078: maintenance of root meristem identity	6.61E-03
111	GO:0052543: callose deposition in cell wall	6.61E-03
112	GO:0010100: negative regulation of photomorphogenesis	7.58E-03
113	GO:0043562: cellular response to nitrogen levels	7.58E-03
114	GO:0010099: regulation of photomorphogenesis	7.58E-03
115	GO:0015979: photosynthesis	7.76E-03
116	GO:0015995: chlorophyll biosynthetic process	8.10E-03
117	GO:0009416: response to light stimulus	8.26E-03
118	GO:0048507: meristem development	8.60E-03
119	GO:0046916: cellular transition metal ion homeostasis	8.60E-03
120	GO:0006783: heme biosynthetic process	8.60E-03
121	GO:0009821: alkaloid biosynthetic process	8.60E-03
122	GO:0080144: amino acid homeostasis	8.60E-03
123	GO:0009790: embryo development	8.93E-03
124	GO:0009638: phototropism	9.67E-03
125	GO:0043067: regulation of programmed cell death	9.67E-03
126	GO:1900865: chloroplast RNA modification	9.67E-03
127	GO:0048527: lateral root development	1.04E-02
128	GO:0045036: protein targeting to chloroplast	1.08E-02
129	GO:0006896: Golgi to vacuole transport	1.08E-02
130	GO:0015770: sucrose transport	1.19E-02
131	GO:0006415: translational termination	1.19E-02
132	GO:0034599: cellular response to oxidative stress	1.19E-02
133	GO:0048229: gametophyte development	1.19E-02
134	GO:0009684: indoleacetic acid biosynthetic process	1.19E-02
135	GO:0009698: phenylpropanoid metabolic process	1.19E-02
136	GO:0005983: starch catabolic process	1.32E-02
137	GO:0010628: positive regulation of gene expression	1.44E-02
138	GO:0010075: regulation of meristem growth	1.44E-02
139	GO:0009767: photosynthetic electron transport chain	1.44E-02
140	GO:0010588: cotyledon vascular tissue pattern formation	1.44E-02
141	GO:2000012: regulation of auxin polar transport	1.44E-02
142	GO:0010102: lateral root morphogenesis	1.44E-02
143	GO:0009266: response to temperature stimulus	1.57E-02
144	GO:0009934: regulation of meristem structural organization	1.57E-02
145	GO:0048467: gynoecium development	1.57E-02
146	GO:0010207: photosystem II assembly	1.57E-02
147	GO:0010030: positive regulation of seed germination	1.70E-02
148	GO:0009901: anther dehiscence	1.70E-02
149	GO:0019853: L-ascorbic acid biosynthetic process	1.70E-02
150	GO:0006855: drug transmembrane transport	1.72E-02
151	GO:0010187: negative regulation of seed germination	1.98E-02
152	GO:0005992: trehalose biosynthetic process	1.98E-02
153	GO:0080147: root hair cell development	1.98E-02
154	GO:0006418: tRNA aminoacylation for protein translation	2.12E-02
155	GO:0048511: rhythmic process	2.27E-02
156	GO:0019915: lipid storage	2.27E-02
157	GO:0061077: chaperone-mediated protein folding	2.27E-02
158	GO:0048366: leaf development	2.37E-02
159	GO:0030245: cellulose catabolic process	2.42E-02
160	GO:0048367: shoot system development	2.43E-02
161	GO:0006012: galactose metabolic process	2.58E-02
162	GO:0009306: protein secretion	2.73E-02
163	GO:0016117: carotenoid biosynthetic process	2.90E-02
164	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.90E-02
165	GO:0042147: retrograde transport, endosome to Golgi	2.90E-02
166	GO:0008284: positive regulation of cell proliferation	2.90E-02
167	GO:0080022: primary root development	3.06E-02
168	GO:0010087: phloem or xylem histogenesis	3.06E-02
169	GO:0048653: anther development	3.06E-02
170	GO:0042631: cellular response to water deprivation	3.06E-02
171	GO:0010305: leaf vascular tissue pattern formation	3.23E-02
172	GO:0010182: sugar mediated signaling pathway	3.23E-02
173	GO:0048868: pollen tube development	3.23E-02
174	GO:0009741: response to brassinosteroid	3.23E-02
175	GO:0010268: brassinosteroid homeostasis	3.23E-02
176	GO:0009733: response to auxin	3.35E-02
177	GO:0048544: recognition of pollen	3.40E-02
178	GO:0042752: regulation of circadian rhythm	3.40E-02
179	GO:0006508: proteolysis	3.42E-02
180	GO:0009556: microsporogenesis	3.57E-02
181	GO:0009851: auxin biosynthetic process	3.57E-02
182	GO:0006623: protein targeting to vacuole	3.57E-02
183	GO:0048825: cotyledon development	3.57E-02
184	GO:0009058: biosynthetic process	3.74E-02
185	GO:0006891: intra-Golgi vesicle-mediated transport	3.75E-02
186	GO:0016132: brassinosteroid biosynthetic process	3.75E-02
187	GO:0071554: cell wall organization or biogenesis	3.75E-02
188	GO:0010583: response to cyclopentenone	3.93E-02
189	GO:0010090: trichome morphogenesis	4.11E-02
190	GO:0016125: sterol metabolic process	4.30E-02
191	GO:0006413: translational initiation	4.55E-02
192	GO:0040008: regulation of growth	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0008721: D-serine ammonia-lyase activity	0.00E+00
2	GO:0004823: leucine-tRNA ligase activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
7	GO:0090711: FMN hydrolase activity	0.00E+00
8	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0030378: serine racemase activity	0.00E+00
11	GO:0003941: L-serine ammonia-lyase activity	0.00E+00
12	GO:0019203: carbohydrate phosphatase activity	3.70E-04
13	GO:0042586: peptide deformylase activity	3.70E-04
14	GO:0010313: phytochrome binding	3.70E-04
15	GO:0005080: protein kinase C binding	3.70E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.70E-04
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.70E-04
18	GO:1905201: gibberellin transmembrane transporter activity	3.70E-04
19	GO:0008184: glycogen phosphorylase activity	3.70E-04
20	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.70E-04
21	GO:0051777: ent-kaurenoate oxidase activity	3.70E-04
22	GO:0050308: sugar-phosphatase activity	3.70E-04
23	GO:0004856: xylulokinase activity	3.70E-04
24	GO:0004645: phosphorylase activity	3.70E-04
25	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	8.05E-04
26	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	8.05E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	8.05E-04
28	GO:0004817: cysteine-tRNA ligase activity	8.05E-04
29	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	8.05E-04
30	GO:0016630: protochlorophyllide reductase activity	8.05E-04
31	GO:0030385: ferredoxin:thioredoxin reductase activity	8.05E-04
32	GO:0004751: ribose-5-phosphate isomerase activity	1.30E-03
33	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.30E-03
34	GO:0016805: dipeptidase activity	1.30E-03
35	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.30E-03
36	GO:0008864: formyltetrahydrofolate deformylase activity	1.30E-03
37	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.30E-03
38	GO:0004180: carboxypeptidase activity	1.30E-03
39	GO:0016992: lipoate synthase activity	1.30E-03
40	GO:0003913: DNA photolyase activity	1.30E-03
41	GO:0002161: aminoacyl-tRNA editing activity	1.30E-03
42	GO:0019843: rRNA binding	1.43E-03
43	GO:0016149: translation release factor activity, codon specific	1.88E-03
44	GO:0022890: inorganic cation transmembrane transporter activity	1.88E-03
45	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.88E-03
46	GO:0009041: uridylate kinase activity	1.88E-03
47	GO:0003999: adenine phosphoribosyltransferase activity	1.88E-03
48	GO:0043495: protein anchor	2.52E-03
49	GO:0004659: prenyltransferase activity	2.52E-03
50	GO:0016279: protein-lysine N-methyltransferase activity	2.52E-03
51	GO:0045430: chalcone isomerase activity	2.52E-03
52	GO:0003727: single-stranded RNA binding	3.04E-03
53	GO:0016846: carbon-sulfur lyase activity	3.23E-03
54	GO:0003959: NADPH dehydrogenase activity	3.23E-03
55	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.23E-03
56	GO:0047134: protein-disulfide reductase activity	3.30E-03
57	GO:2001070: starch binding	3.99E-03
58	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.99E-03
59	GO:0004629: phospholipase C activity	3.99E-03
60	GO:0016208: AMP binding	3.99E-03
61	GO:0004791: thioredoxin-disulfide reductase activity	4.13E-03
62	GO:0016788: hydrolase activity, acting on ester bonds	4.70E-03
63	GO:0004435: phosphatidylinositol phospholipase C activity	4.81E-03
64	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.81E-03
65	GO:0008195: phosphatidate phosphatase activity	4.81E-03
66	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.81E-03
67	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.40E-03
68	GO:0019899: enzyme binding	5.68E-03
69	GO:0003723: RNA binding	5.96E-03
70	GO:0004033: aldo-keto reductase (NADP) activity	6.61E-03
71	GO:0046914: transition metal ion binding	7.58E-03
72	GO:0102483: scopolin beta-glucosidase activity	8.10E-03
73	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.60E-03
74	GO:0003747: translation release factor activity	8.60E-03
75	GO:0016207: 4-coumarate-CoA ligase activity	8.60E-03
76	GO:0015238: drug transmembrane transporter activity	9.44E-03
77	GO:0016844: strictosidine synthase activity	9.67E-03
78	GO:0008559: xenobiotic-transporting ATPase activity	1.19E-02
79	GO:0044183: protein binding involved in protein folding	1.19E-02
80	GO:0015386: potassium:proton antiporter activity	1.19E-02
81	GO:0008515: sucrose transmembrane transporter activity	1.19E-02
82	GO:0008422: beta-glucosidase activity	1.25E-02
83	GO:0051539: 4 iron, 4 sulfur cluster binding	1.30E-02
84	GO:0004022: alcohol dehydrogenase (NAD) activity	1.44E-02
85	GO:0004089: carbonate dehydratase activity	1.44E-02
86	GO:0019888: protein phosphatase regulator activity	1.44E-02
87	GO:0003725: double-stranded RNA binding	1.44E-02
88	GO:0042802: identical protein binding	1.50E-02
89	GO:0008266: poly(U) RNA binding	1.57E-02
90	GO:0008083: growth factor activity	1.57E-02
91	GO:0035091: phosphatidylinositol binding	1.60E-02
92	GO:0051119: sugar transmembrane transporter activity	1.70E-02
93	GO:0005525: GTP binding	1.95E-02
94	GO:0005528: FK506 binding	1.98E-02
95	GO:0003690: double-stranded DNA binding	2.06E-02
96	GO:0015079: potassium ion transmembrane transporter activity	2.12E-02
97	GO:0033612: receptor serine/threonine kinase binding	2.27E-02
98	GO:0022891: substrate-specific transmembrane transporter activity	2.58E-02
99	GO:0008810: cellulase activity	2.58E-02
100	GO:0052689: carboxylic ester hydrolase activity	2.86E-02
101	GO:0004812: aminoacyl-tRNA ligase activity	2.90E-02
102	GO:0015035: protein disulfide oxidoreductase activity	2.92E-02
103	GO:0003713: transcription coactivator activity	3.23E-02
104	GO:0015299: solute:proton antiporter activity	3.40E-02
105	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.64E-02
106	GO:0030170: pyridoxal phosphate binding	3.94E-02
107	GO:0004252: serine-type endopeptidase activity	3.94E-02
108	GO:0008565: protein transporter activity	4.24E-02
109	GO:0016791: phosphatase activity	4.30E-02
110	GO:0004519: endonuclease activity	4.54E-02
111	GO:0015297: antiporter activity	4.66E-02
112	GO:0016597: amino acid binding	4.68E-02
113	GO:0016413: O-acetyltransferase activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	3.23E-23
3	GO:0009570: chloroplast stroma	3.26E-14
4	GO:0009535: chloroplast thylakoid membrane	1.58E-07
5	GO:0031969: chloroplast membrane	7.54E-07
6	GO:0009344: nitrite reductase complex [NAD(P)H]	3.70E-04
7	GO:0009547: plastid ribosome	3.70E-04
8	GO:0009295: nucleoid	7.99E-04
9	GO:0009534: chloroplast thylakoid	1.03E-03
10	GO:0009508: plastid chromosome	1.24E-03
11	GO:0009941: chloroplast envelope	1.25E-03
12	GO:0033281: TAT protein transport complex	1.30E-03
13	GO:0042646: plastid nucleoid	1.88E-03
14	GO:0009579: thylakoid	3.43E-03
15	GO:0009840: chloroplastic endopeptidase Clp complex	4.81E-03
16	GO:0009706: chloroplast inner membrane	5.50E-03
17	GO:0012507: ER to Golgi transport vesicle membrane	6.61E-03
18	GO:0009543: chloroplast thylakoid lumen	7.34E-03
19	GO:0005763: mitochondrial small ribosomal subunit	8.60E-03
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.60E-03
21	GO:0042644: chloroplast nucleoid	8.60E-03
22	GO:0009707: chloroplast outer membrane	8.97E-03
23	GO:0000159: protein phosphatase type 2A complex	1.19E-02
24	GO:0000311: plastid large ribosomal subunit	1.32E-02
25	GO:0009536: plastid	1.43E-02
26	GO:0030095: chloroplast photosystem II	1.57E-02
27	GO:0046658: anchored component of plasma membrane	1.58E-02
28	GO:0009654: photosystem II oxygen evolving complex	2.12E-02
29	GO:0042651: thylakoid membrane	2.12E-02
30	GO:0009532: plastid stroma	2.27E-02
31	GO:0009523: photosystem II	3.57E-02
32	GO:0019898: extrinsic component of membrane	3.57E-02
33	GO:0005778: peroxisomal membrane	4.49E-02
34	GO:0030529: intracellular ribonucleoprotein complex	4.87E-02