co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16785

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0052386: cell wall thickening	0.00E+00
2	GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress	0.00E+00
3	GO:0010401: pectic galactan metabolic process	0.00E+00
4	GO:0006983: ER overload response	0.00E+00
5	GO:2000068: regulation of defense response to insect	0.00E+00
6	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
7	GO:0008202: steroid metabolic process	7.12E-05
8	GO:0019567: arabinose biosynthetic process	7.58E-05
9	GO:0051090: regulation of sequence-specific DNA binding transcription factor activity	7.58E-05
10	GO:0016337: single organismal cell-cell adhesion	7.58E-05
11	GO:0052541: plant-type cell wall cellulose metabolic process	1.81E-04
12	GO:0043066: negative regulation of apoptotic process	1.81E-04
13	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	1.81E-04
14	GO:0015012: heparan sulfate proteoglycan biosynthetic process	1.81E-04
15	GO:0010155: regulation of proton transport	1.81E-04
16	GO:0006568: tryptophan metabolic process	1.81E-04
17	GO:0006024: glycosaminoglycan biosynthetic process	1.81E-04
18	GO:0071398: cellular response to fatty acid	3.05E-04
19	GO:0032504: multicellular organism reproduction	3.05E-04
20	GO:0010476: gibberellin mediated signaling pathway	3.05E-04
21	GO:0010325: raffinose family oligosaccharide biosynthetic process	3.05E-04
22	GO:0009410: response to xenobiotic stimulus	3.05E-04
23	GO:0009963: positive regulation of flavonoid biosynthetic process	4.41E-04
24	GO:0071323: cellular response to chitin	4.41E-04
25	GO:0080024: indolebutyric acid metabolic process	4.41E-04
26	GO:0055070: copper ion homeostasis	4.41E-04
27	GO:0033356: UDP-L-arabinose metabolic process	5.87E-04
28	GO:0015867: ATP transport	5.87E-04
29	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	5.87E-04
30	GO:0009229: thiamine diphosphate biosynthetic process	7.44E-04
31	GO:0006665: sphingolipid metabolic process	7.44E-04
32	GO:0009816: defense response to bacterium, incompatible interaction	8.20E-04
33	GO:0009228: thiamine biosynthetic process	9.07E-04
34	GO:0009759: indole glucosinolate biosynthetic process	9.07E-04
35	GO:0015866: ADP transport	9.07E-04
36	GO:0016311: dephosphorylation	9.54E-04
37	GO:0008219: cell death	1.00E-03
38	GO:0030643: cellular phosphate ion homeostasis	1.08E-03
39	GO:0048444: floral organ morphogenesis	1.08E-03
40	GO:0071669: plant-type cell wall organization or biogenesis	1.26E-03
41	GO:0010044: response to aluminum ion	1.26E-03
42	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.46E-03
43	GO:0009850: auxin metabolic process	1.46E-03
44	GO:0006605: protein targeting	1.46E-03
45	GO:0006631: fatty acid metabolic process	1.48E-03
46	GO:0042542: response to hydrogen peroxide	1.54E-03
47	GO:0010417: glucuronoxylan biosynthetic process	1.66E-03
48	GO:0007275: multicellular organism development	1.79E-03
49	GO:0007338: single fertilization	1.87E-03
50	GO:0009056: catabolic process	1.87E-03
51	GO:0009835: fruit ripening	1.87E-03
52	GO:0006886: intracellular protein transport	1.93E-03
53	GO:0009086: methionine biosynthetic process	2.09E-03
54	GO:0010629: negative regulation of gene expression	2.32E-03
55	GO:0043069: negative regulation of programmed cell death	2.32E-03
56	GO:0000038: very long-chain fatty acid metabolic process	2.56E-03
57	GO:0009620: response to fungus	2.78E-03
58	GO:0010102: lateral root morphogenesis	3.06E-03
59	GO:0090351: seedling development	3.59E-03
60	GO:0009863: salicylic acid mediated signaling pathway	4.15E-03
61	GO:0009269: response to desiccation	4.73E-03
62	GO:0009738: abscisic acid-activated signaling pathway	4.80E-03
63	GO:0009814: defense response, incompatible interaction	5.03E-03
64	GO:0030433: ubiquitin-dependent ERAD pathway	5.03E-03
65	GO:0031348: negative regulation of defense response	5.03E-03
66	GO:0009693: ethylene biosynthetic process	5.34E-03
67	GO:0010051: xylem and phloem pattern formation	6.31E-03
68	GO:0010087: phloem or xylem histogenesis	6.31E-03
69	GO:0045489: pectin biosynthetic process	6.64E-03
70	GO:0006623: protein targeting to vacuole	7.34E-03
71	GO:0010193: response to ozone	7.69E-03
72	GO:0006635: fatty acid beta-oxidation	7.69E-03
73	GO:0006464: cellular protein modification process	8.79E-03
74	GO:0009567: double fertilization forming a zygote and endosperm	8.79E-03
75	GO:0009607: response to biotic stimulus	1.03E-02
76	GO:0009817: defense response to fungus, incompatible interaction	1.20E-02
77	GO:0030244: cellulose biosynthetic process	1.20E-02
78	GO:0009832: plant-type cell wall biogenesis	1.24E-02
79	GO:0006869: lipid transport	1.32E-02
80	GO:0009867: jasmonic acid mediated signaling pathway	1.42E-02
81	GO:0045087: innate immune response	1.42E-02
82	GO:0016051: carbohydrate biosynthetic process	1.42E-02
83	GO:0009637: response to blue light	1.42E-02
84	GO:0006099: tricarboxylic acid cycle	1.46E-02
85	GO:0009408: response to heat	1.48E-02
86	GO:0006839: mitochondrial transport	1.55E-02
87	GO:0015031: protein transport	1.66E-02
88	GO:0009809: lignin biosynthetic process	2.10E-02
89	GO:0006486: protein glycosylation	2.10E-02
90	GO:0006351: transcription, DNA-templated	2.64E-02
91	GO:0009611: response to wounding	2.69E-02
92	GO:0009737: response to abscisic acid	3.17E-02
93	GO:0006633: fatty acid biosynthetic process	3.72E-02
94	GO:0009739: response to gibberellin	4.31E-02
95	GO:0006470: protein dephosphorylation	4.37E-02
96	GO:0007166: cell surface receptor signaling pathway	4.37E-02
97	GO:0009617: response to bacterium	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
2	GO:0050334: thiaminase activity	0.00E+00
3	GO:0034338: short-chain carboxylesterase activity	0.00E+00
4	GO:0008142: oxysterol binding	4.70E-05
5	GO:0047150: betaine-homocysteine S-methyltransferase activity	7.58E-05
6	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	7.58E-05
7	GO:0032934: sterol binding	1.81E-04
8	GO:0052691: UDP-arabinopyranose mutase activity	1.81E-04
9	GO:0010331: gibberellin binding	1.81E-04
10	GO:0031418: L-ascorbic acid binding	2.20E-04
11	GO:0005515: protein binding	2.74E-04
12	GO:0010178: IAA-amino acid conjugate hydrolase activity	4.41E-04
13	GO:0016866: intramolecular transferase activity	5.87E-04
14	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	7.44E-04
15	GO:0004623: phospholipase A2 activity	7.44E-04
16	GO:0102391: decanoate--CoA ligase activity	1.08E-03
17	GO:0005347: ATP transmembrane transporter activity	1.08E-03
18	GO:0004656: procollagen-proline 4-dioxygenase activity	1.08E-03
19	GO:0015217: ADP transmembrane transporter activity	1.08E-03
20	GO:0008320: protein transmembrane transporter activity	1.26E-03
21	GO:0004467: long-chain fatty acid-CoA ligase activity	1.26E-03
22	GO:0003993: acid phosphatase activity	1.31E-03
23	GO:0052747: sinapyl alcohol dehydrogenase activity	1.46E-03
24	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.66E-03
25	GO:0004630: phospholipase D activity	1.66E-03
26	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.87E-03
27	GO:0004722: protein serine/threonine phosphatase activity	2.09E-03
28	GO:0045551: cinnamyl-alcohol dehydrogenase activity	2.80E-03
29	GO:0031072: heat shock protein binding	3.06E-03
30	GO:0008061: chitin binding	3.59E-03
31	GO:0003712: transcription cofactor activity	3.59E-03
32	GO:0035251: UDP-glucosyltransferase activity	4.73E-03
33	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	5.03E-03
34	GO:0005102: receptor binding	5.98E-03
35	GO:0016791: phosphatase activity	8.79E-03
36	GO:0008237: metallopeptidase activity	9.17E-03
37	GO:0030247: polysaccharide binding	1.12E-02
38	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.42E-02
39	GO:0046983: protein dimerization activity	1.77E-02
40	GO:0046872: metal ion binding	2.25E-02
41	GO:0031625: ubiquitin protein ligase binding	2.25E-02
42	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.48E-02
43	GO:0022857: transmembrane transporter activity	2.58E-02
44	GO:0016874: ligase activity	2.58E-02
45	GO:0051082: unfolded protein binding	2.69E-02
46	GO:0016746: transferase activity, transferring acyl groups	2.75E-02
47	GO:0043565: sequence-specific DNA binding	3.08E-02
48	GO:0016758: transferase activity, transferring hexosyl groups	3.10E-02
49	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.22E-02
50	GO:0005524: ATP binding	3.26E-02
51	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.78E-02
52	GO:0015297: antiporter activity	3.85E-02
53	GO:0042802: identical protein binding	4.71E-02
54	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.71E-02
55	GO:0005509: calcium ion binding	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0045252: oxoglutarate dehydrogenase complex	7.58E-05
2	GO:0005794: Golgi apparatus	1.56E-04
3	GO:0030134: ER to Golgi transport vesicle	1.81E-04
4	GO:0030658: transport vesicle membrane	4.41E-04
5	GO:0005783: endoplasmic reticulum	4.58E-04
6	GO:0005801: cis-Golgi network	1.08E-03
7	GO:0005789: endoplasmic reticulum membrane	1.15E-03
8	GO:0009986: cell surface	1.26E-03
9	GO:0005779: integral component of peroxisomal membrane	1.66E-03
10	GO:0030665: clathrin-coated vesicle membrane	2.09E-03
11	GO:0017119: Golgi transport complex	2.32E-03
12	GO:0005774: vacuolar membrane	4.83E-03
13	GO:0009506: plasmodesma	6.25E-03
14	GO:0016021: integral component of membrane	6.70E-03
15	GO:0005802: trans-Golgi network	9.10E-03
16	GO:0005768: endosome	1.07E-02
17	GO:0000151: ubiquitin ligase complex	1.20E-02
18	GO:0000325: plant-type vacuole	1.33E-02
19	GO:0005743: mitochondrial inner membrane	1.38E-02
20	GO:0031902: late endosome membrane	1.60E-02
21	GO:0005886: plasma membrane	1.95E-02
22	GO:0005635: nuclear envelope	2.20E-02
23	GO:0005623: cell	3.22E-02
24	GO:0009705: plant-type vacuole membrane	3.98E-02
25	GO:0005615: extracellular space	4.31E-02
26	GO:0005622: intracellular	4.65E-02