co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16565

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006983: ER overload response	0.00E+00
2	GO:1902009: positive regulation of toxin transport	0.00E+00
3	GO:0051553: flavone biosynthetic process	0.00E+00
4	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
5	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
6	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
7	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
8	GO:0005993: trehalose catabolic process	0.00E+00
9	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
10	GO:0010401: pectic galactan metabolic process	0.00E+00
11	GO:0046865: terpenoid transport	0.00E+00
12	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
13	GO:0015012: heparan sulfate proteoglycan biosynthetic process	2.65E-06
14	GO:0006024: glycosaminoglycan biosynthetic process	2.65E-06
15	GO:0009863: salicylic acid mediated signaling pathway	6.71E-05
16	GO:0030150: protein import into mitochondrial matrix	6.71E-05
17	GO:0009751: response to salicylic acid	1.93E-04
18	GO:0050691: regulation of defense response to virus by host	2.39E-04
19	GO:0034975: protein folding in endoplasmic reticulum	2.39E-04
20	GO:0016337: single organismal cell-cell adhesion	2.39E-04
21	GO:1990641: response to iron ion starvation	2.39E-04
22	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.83E-04
23	GO:0010200: response to chitin	5.18E-04
24	GO:0080183: response to photooxidative stress	5.29E-04
25	GO:0010155: regulation of proton transport	5.29E-04
26	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.29E-04
27	GO:0052541: plant-type cell wall cellulose metabolic process	5.29E-04
28	GO:0006101: citrate metabolic process	5.29E-04
29	GO:0043066: negative regulation of apoptotic process	5.29E-04
30	GO:0000266: mitochondrial fission	5.92E-04
31	GO:0002237: response to molecule of bacterial origin	7.56E-04
32	GO:0006065: UDP-glucuronate biosynthetic process	8.60E-04
33	GO:0015783: GDP-fucose transport	8.60E-04
34	GO:0009410: response to xenobiotic stimulus	8.60E-04
35	GO:0015692: lead ion transport	8.60E-04
36	GO:0052546: cell wall pectin metabolic process	8.60E-04
37	GO:0080163: regulation of protein serine/threonine phosphatase activity	8.60E-04
38	GO:0080168: abscisic acid transport	8.60E-04
39	GO:0000162: tryptophan biosynthetic process	9.38E-04
40	GO:0071323: cellular response to chitin	1.23E-03
41	GO:0055070: copper ion homeostasis	1.23E-03
42	GO:0002239: response to oomycetes	1.23E-03
43	GO:0010731: protein glutathionylation	1.23E-03
44	GO:0080037: negative regulation of cytokinin-activated signaling pathway	1.64E-03
45	GO:0006621: protein retention in ER lumen	1.64E-03
46	GO:0006097: glyoxylate cycle	2.09E-03
47	GO:0009229: thiamine diphosphate biosynthetic process	2.09E-03
48	GO:0006665: sphingolipid metabolic process	2.09E-03
49	GO:2000762: regulation of phenylpropanoid metabolic process	2.09E-03
50	GO:0002229: defense response to oomycetes	2.50E-03
51	GO:0009738: abscisic acid-activated signaling pathway	2.50E-03
52	GO:0009759: indole glucosinolate biosynthetic process	2.57E-03
53	GO:0009228: thiamine biosynthetic process	2.57E-03
54	GO:0045040: protein import into mitochondrial outer membrane	2.57E-03
55	GO:1900425: negative regulation of defense response to bacterium	2.57E-03
56	GO:0033365: protein localization to organelle	2.57E-03
57	GO:0042742: defense response to bacterium	2.68E-03
58	GO:0006464: cellular protein modification process	3.03E-03
59	GO:0031930: mitochondria-nucleus signaling pathway	3.09E-03
60	GO:0045926: negative regulation of growth	3.09E-03
61	GO:0006333: chromatin assembly or disassembly	3.64E-03
62	GO:0010044: response to aluminum ion	3.64E-03
63	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.64E-03
64	GO:0046470: phosphatidylcholine metabolic process	3.64E-03
65	GO:1900056: negative regulation of leaf senescence	3.64E-03
66	GO:1900057: positive regulation of leaf senescence	3.64E-03
67	GO:0010029: regulation of seed germination	3.81E-03
68	GO:0006605: protein targeting	4.23E-03
69	GO:0031540: regulation of anthocyanin biosynthetic process	4.23E-03
70	GO:0006102: isocitrate metabolic process	4.23E-03
71	GO:0016559: peroxisome fission	4.23E-03
72	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.23E-03
73	GO:0030162: regulation of proteolysis	4.23E-03
74	GO:0009850: auxin metabolic process	4.23E-03
75	GO:0010120: camalexin biosynthetic process	4.84E-03
76	GO:0010112: regulation of systemic acquired resistance	5.48E-03
77	GO:0015780: nucleotide-sugar transport	5.48E-03
78	GO:0007338: single fertilization	5.48E-03
79	GO:0006470: protein dephosphorylation	5.75E-03
80	GO:0009867: jasmonic acid mediated signaling pathway	5.96E-03
81	GO:0008202: steroid metabolic process	6.15E-03
82	GO:0043067: regulation of programmed cell death	6.15E-03
83	GO:0009086: methionine biosynthetic process	6.15E-03
84	GO:0043069: negative regulation of programmed cell death	6.85E-03
85	GO:0010629: negative regulation of gene expression	6.85E-03
86	GO:0051555: flavonol biosynthetic process	6.85E-03
87	GO:0006631: fatty acid metabolic process	7.08E-03
88	GO:0009684: indoleacetic acid biosynthetic process	7.58E-03
89	GO:0000038: very long-chain fatty acid metabolic process	7.58E-03
90	GO:0019684: photosynthesis, light reaction	7.58E-03
91	GO:0009089: lysine biosynthetic process via diaminopimelate	7.58E-03
92	GO:0051707: response to other organism	7.68E-03
93	GO:0045037: protein import into chloroplast stroma	8.33E-03
94	GO:0006855: drug transmembrane transport	8.97E-03
95	GO:0006626: protein targeting to mitochondrion	9.11E-03
96	GO:0006829: zinc II ion transport	9.11E-03
97	GO:2000012: regulation of auxin polar transport	9.11E-03
98	GO:0010102: lateral root morphogenesis	9.11E-03
99	GO:0006979: response to oxidative stress	9.21E-03
100	GO:0031347: regulation of defense response	9.31E-03
101	GO:0007275: multicellular organism development	1.01E-02
102	GO:0006486: protein glycosylation	1.04E-02
103	GO:0034976: response to endoplasmic reticulum stress	1.16E-02
104	GO:0006289: nucleotide-excision repair	1.25E-02
105	GO:0000027: ribosomal large subunit assembly	1.25E-02
106	GO:0045333: cellular respiration	1.25E-02
107	GO:0080147: root hair cell development	1.25E-02
108	GO:0006351: transcription, DNA-templated	1.35E-02
109	GO:0015031: protein transport	1.38E-02
110	GO:0006334: nucleosome assembly	1.43E-02
111	GO:0031348: negative regulation of defense response	1.53E-02
112	GO:0071456: cellular response to hypoxia	1.53E-02
113	GO:0009814: defense response, incompatible interaction	1.53E-02
114	GO:0009408: response to heat	1.82E-02
115	GO:0010087: phloem or xylem histogenesis	1.93E-02
116	GO:0009753: response to jasmonic acid	1.99E-02
117	GO:0010197: polar nucleus fusion	2.03E-02
118	GO:0006623: protein targeting to vacuole	2.25E-02
119	GO:0071554: cell wall organization or biogenesis	2.36E-02
120	GO:0010193: response to ozone	2.36E-02
121	GO:0032502: developmental process	2.47E-02
122	GO:0010150: leaf senescence	2.56E-02
123	GO:0030163: protein catabolic process	2.59E-02
124	GO:0009567: double fertilization forming a zygote and endosperm	2.71E-02
125	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.87E-02
126	GO:0007166: cell surface receptor signaling pathway	2.93E-02
127	GO:0008380: RNA splicing	3.06E-02
128	GO:0009816: defense response to bacterium, incompatible interaction	3.19E-02
129	GO:0009737: response to abscisic acid	3.29E-02
130	GO:0008219: cell death	3.71E-02
131	GO:0009813: flavonoid biosynthetic process	3.84E-02
132	GO:0000724: double-strand break repair via homologous recombination	4.25E-02
133	GO:0009637: response to blue light	4.39E-02
134	GO:0045087: innate immune response	4.39E-02
135	GO:0006099: tricarboxylic acid cycle	4.53E-02
136	GO:0009723: response to ethylene	4.57E-02
137	GO:0006897: endocytosis	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005046: KDEL sequence binding	0.00E+00
2	GO:0034338: short-chain carboxylesterase activity	0.00E+00
3	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
4	GO:0033759: flavone synthase activity	0.00E+00
5	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
6	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
7	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
8	GO:0005212: structural constituent of eye lens	0.00E+00
9	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
10	GO:0050334: thiaminase activity	0.00E+00
11	GO:0004834: tryptophan synthase activity	3.99E-05
12	GO:0010285: L,L-diaminopimelate aminotransferase activity	2.39E-04
13	GO:0016920: pyroglutamyl-peptidase activity	2.39E-04
14	GO:0015927: trehalase activity	2.39E-04
15	GO:0047150: betaine-homocysteine S-methyltransferase activity	2.39E-04
16	GO:0015036: disulfide oxidoreductase activity	5.29E-04
17	GO:0003994: aconitate hydratase activity	5.29E-04
18	GO:0032934: sterol binding	5.29E-04
19	GO:0050736: O-malonyltransferase activity	5.29E-04
20	GO:0015266: protein channel activity	6.71E-04
21	GO:0005457: GDP-fucose transmembrane transporter activity	8.60E-04
22	GO:0003979: UDP-glucose 6-dehydrogenase activity	8.60E-04
23	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.23E-03
24	GO:0035529: NADH pyrophosphatase activity	1.23E-03
25	GO:0030527: structural constituent of chromatin	1.23E-03
26	GO:0035251: UDP-glucosyltransferase activity	1.25E-03
27	GO:0009916: alternative oxidase activity	1.64E-03
28	GO:0046923: ER retention sequence binding	1.64E-03
29	GO:0047631: ADP-ribose diphosphatase activity	2.09E-03
30	GO:0004623: phospholipase A2 activity	2.09E-03
31	GO:0005509: calcium ion binding	2.28E-03
32	GO:0015035: protein disulfide oxidoreductase activity	2.51E-03
33	GO:0000210: NAD+ diphosphatase activity	2.57E-03
34	GO:0046872: metal ion binding	2.78E-03
35	GO:0004656: procollagen-proline 4-dioxygenase activity	3.09E-03
36	GO:0102391: decanoate--CoA ligase activity	3.09E-03
37	GO:0004722: protein serine/threonine phosphatase activity	3.58E-03
38	GO:0004467: long-chain fatty acid-CoA ligase activity	3.64E-03
39	GO:0047893: flavonol 3-O-glucosyltransferase activity	4.23E-03
40	GO:0052747: sinapyl alcohol dehydrogenase activity	4.23E-03
41	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.70E-03
42	GO:0008142: oxysterol binding	4.84E-03
43	GO:0004630: phospholipase D activity	4.84E-03
44	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	4.84E-03
45	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	5.96E-03
46	GO:0004864: protein phosphatase inhibitor activity	6.85E-03
47	GO:0004713: protein tyrosine kinase activity	6.85E-03
48	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.33E-03
49	GO:0003682: chromatin binding	9.08E-03
50	GO:0031072: heat shock protein binding	9.11E-03
51	GO:0051287: NAD binding	9.31E-03
52	GO:0043565: sequence-specific DNA binding	1.04E-02
53	GO:0008061: chitin binding	1.07E-02
54	GO:0003712: transcription cofactor activity	1.07E-02
55	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.23E-02
56	GO:0031418: L-ascorbic acid binding	1.25E-02
57	GO:0008324: cation transmembrane transporter activity	1.34E-02
58	GO:0016740: transferase activity	1.38E-02
59	GO:0016874: ligase activity	1.39E-02
60	GO:0003756: protein disulfide isomerase activity	1.72E-02
61	GO:0005102: receptor binding	1.82E-02
62	GO:0046873: metal ion transmembrane transporter activity	2.03E-02
63	GO:0030170: pyridoxal phosphate binding	2.06E-02
64	GO:0004872: receptor activity	2.25E-02
65	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.39E-02
66	GO:0015297: antiporter activity	2.45E-02
67	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.59E-02
68	GO:0008483: transaminase activity	2.83E-02
69	GO:0008237: metallopeptidase activity	2.83E-02
70	GO:0016413: O-acetyltransferase activity	2.95E-02
71	GO:0005515: protein binding	3.10E-02
72	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.26E-02
73	GO:0042802: identical protein binding	3.26E-02
74	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.32E-02
75	GO:0008375: acetylglucosaminyltransferase activity	3.32E-02
76	GO:0004683: calmodulin-dependent protein kinase activity	3.45E-02
77	GO:0030247: polysaccharide binding	3.45E-02
78	GO:0015238: drug transmembrane transporter activity	3.84E-02
79	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.67E-02
80	GO:0051539: 4 iron, 4 sulfur cluster binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0031314: extrinsic component of mitochondrial inner membrane	5.29E-04
2	GO:0005783: endoplasmic reticulum	5.46E-04
3	GO:0016021: integral component of membrane	8.52E-04
4	GO:0005743: mitochondrial inner membrane	8.55E-04
5	GO:0030658: transport vesicle membrane	1.23E-03
6	GO:0005741: mitochondrial outer membrane	1.25E-03
7	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.61E-03
8	GO:0005789: endoplasmic reticulum membrane	1.94E-03
9	GO:0000164: protein phosphatase type 1 complex	2.09E-03
10	GO:0005801: cis-Golgi network	3.09E-03
11	GO:0031305: integral component of mitochondrial inner membrane	4.23E-03
12	GO:0005742: mitochondrial outer membrane translocase complex	4.84E-03
13	GO:0030665: clathrin-coated vesicle membrane	6.15E-03
14	GO:0017119: Golgi transport complex	6.85E-03
15	GO:0031307: integral component of mitochondrial outer membrane	8.33E-03
16	GO:0005794: Golgi apparatus	9.86E-03
17	GO:0005795: Golgi stack	1.07E-02
18	GO:0022625: cytosolic large ribosomal subunit	1.19E-02
19	GO:0070469: respiratory chain	1.34E-02
20	GO:0005623: cell	1.91E-02
21	GO:0005802: trans-Golgi network	2.08E-02
22	GO:0016592: mediator complex	2.47E-02
23	GO:0000785: chromatin	2.47E-02
24	GO:0005768: endosome	2.51E-02
25	GO:0005778: peroxisomal membrane	2.83E-02
26	GO:0005788: endoplasmic reticulum lumen	3.19E-02
27	GO:0019005: SCF ubiquitin ligase complex	3.71E-02
28	GO:0000151: ubiquitin ligase complex	3.71E-02
29	GO:0015934: large ribosomal subunit	4.11E-02
30	GO:0000325: plant-type vacuole	4.11E-02
31	GO:0005737: cytoplasm	4.24E-02
32	GO:0000139: Golgi membrane	4.55E-02
33	GO:0031902: late endosome membrane	4.95E-02