co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
2	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
3	GO:0006907: pinocytosis	0.00E+00
4	GO:0046506: sulfolipid biosynthetic process	5.34E-05
5	GO:0031648: protein destabilization	1.30E-04
6	GO:0009686: gibberellin biosynthetic process	2.02E-04
7	GO:0016255: attachment of GPI anchor to protein	2.22E-04
8	GO:0048575: short-day photoperiodism, flowering	2.22E-04
9	GO:0007276: gamete generation	3.25E-04
10	GO:0016556: mRNA modification	3.25E-04
11	GO:0042991: transcription factor import into nucleus	4.35E-04
12	GO:0048629: trichome patterning	4.35E-04
13	GO:0009247: glycolipid biosynthetic process	5.52E-04
14	GO:0009082: branched-chain amino acid biosynthetic process	8.05E-04
15	GO:0009099: valine biosynthetic process	8.05E-04
16	GO:0010492: maintenance of shoot apical meristem identity	1.08E-03
17	GO:0042255: ribosome assembly	1.08E-03
18	GO:0006353: DNA-templated transcription, termination	1.08E-03
19	GO:0009097: isoleucine biosynthetic process	1.23E-03
20	GO:0009657: plastid organization	1.23E-03
21	GO:0051865: protein autoubiquitination	1.38E-03
22	GO:0048364: root development	1.43E-03
23	GO:0005982: starch metabolic process	1.54E-03
24	GO:1900865: chloroplast RNA modification	1.54E-03
25	GO:0031425: chloroplast RNA processing	1.54E-03
26	GO:0010629: negative regulation of gene expression	1.71E-03
27	GO:0009740: gibberellic acid mediated signaling pathway	1.82E-03
28	GO:0012501: programmed cell death	2.06E-03
29	GO:0005983: starch catabolic process	2.06E-03
30	GO:0007034: vacuolar transport	2.43E-03
31	GO:0009887: animal organ morphogenesis	2.43E-03
32	GO:0006302: double-strand break repair	2.43E-03
33	GO:0010020: chloroplast fission	2.43E-03
34	GO:0090351: seedling development	2.63E-03
35	GO:0006863: purine nucleobase transport	2.83E-03
36	GO:0051321: meiotic cell cycle	3.46E-03
37	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.68E-03
38	GO:0042127: regulation of cell proliferation	4.13E-03
39	GO:0045492: xylan biosynthetic process	4.13E-03
40	GO:0009958: positive gravitropism	4.84E-03
41	GO:0009658: chloroplast organization	5.09E-03
42	GO:0048825: cotyledon development	5.34E-03
43	GO:0010583: response to cyclopentenone	5.86E-03
44	GO:0030163: protein catabolic process	6.12E-03
45	GO:0009567: double fertilization forming a zygote and endosperm	6.39E-03
46	GO:0019760: glucosinolate metabolic process	6.39E-03
47	GO:0000910: cytokinesis	6.94E-03
48	GO:0010027: thylakoid membrane organization	7.22E-03
49	GO:0016126: sterol biosynthetic process	7.22E-03
50	GO:0048573: photoperiodism, flowering	8.09E-03
51	GO:0006811: ion transport	9.30E-03
52	GO:0009908: flower development	1.50E-02
53	GO:0009736: cytokinin-activated signaling pathway	1.51E-02
54	GO:0006417: regulation of translation	1.63E-02
55	GO:0048367: shoot system development	1.74E-02
56	GO:0009553: embryo sac development	1.90E-02
57	GO:0009793: embryo development ending in seed dormancy	1.97E-02
58	GO:0016310: phosphorylation	2.12E-02
59	GO:0009790: embryo development	2.55E-02
60	GO:0016036: cellular response to phosphate starvation	2.73E-02
61	GO:0016567: protein ubiquitination	2.78E-02
62	GO:0009451: RNA modification	2.91E-02
63	GO:0009739: response to gibberellin	3.11E-02
64	GO:0006470: protein dephosphorylation	3.15E-02
65	GO:0008380: RNA splicing	3.25E-02
66	GO:0009826: unidimensional cell growth	3.81E-02
67	GO:0048366: leaf development	4.39E-02
68	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.67E-02
69	GO:0016192: vesicle-mediated transport	4.73E-02
70	GO:0046777: protein autophosphorylation	4.78E-02
71	GO:0006355: regulation of transcription, DNA-templated	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0046510: UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0051752: phosphoglucan, water dikinase activity	0.00E+00
5	GO:0004160: dihydroxy-acid dehydratase activity	5.34E-05
6	GO:0019200: carbohydrate kinase activity	1.30E-04
7	GO:0004519: endonuclease activity	2.06E-04
8	GO:0045544: gibberellin 20-oxidase activity	3.25E-04
9	GO:0016836: hydro-lyase activity	4.35E-04
10	GO:2001070: starch binding	6.76E-04
11	GO:0043621: protein self-association	1.11E-03
12	GO:0004190: aspartic-type endopeptidase activity	2.63E-03
13	GO:0005345: purine nucleobase transmembrane transporter activity	3.24E-03
14	GO:0004176: ATP-dependent peptidase activity	3.46E-03
15	GO:0008408: 3'-5' exonuclease activity	3.46E-03
16	GO:0003727: single-stranded RNA binding	4.13E-03
17	GO:0004518: nuclease activity	5.86E-03
18	GO:0008237: metallopeptidase activity	6.66E-03
19	GO:0003824: catalytic activity	7.65E-03
20	GO:0004722: protein serine/threonine phosphatase activity	8.28E-03
21	GO:0005515: protein binding	8.79E-03
22	GO:0030145: manganese ion binding	9.61E-03
23	GO:0046983: protein dimerization activity	9.82E-03
24	GO:0004842: ubiquitin-protein transferase activity	1.03E-02
25	GO:0051539: 4 iron, 4 sulfur cluster binding	1.12E-02
26	GO:0003690: double-stranded DNA binding	1.55E-02
27	GO:0003777: microtubule motor activity	1.63E-02
28	GO:0015035: protein disulfide oxidoreductase activity	1.98E-02
29	GO:0019843: rRNA binding	2.28E-02
30	GO:0016829: lyase activity	2.41E-02
31	GO:0008194: UDP-glycosyltransferase activity	3.11E-02
32	GO:0016301: kinase activity	3.24E-02
33	GO:0042802: identical protein binding	3.40E-02
34	GO:0008168: methyltransferase activity	3.81E-02
35	GO:0000287: magnesium ion binding	3.86E-02
36	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.42E-02
37	GO:0008233: peptidase activity	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0009536: plastid	4.78E-05
2	GO:0000791: euchromatin	5.34E-05
3	GO:0031357: integral component of chloroplast inner membrane	1.30E-04
4	GO:0030870: Mre11 complex	1.30E-04
5	GO:0042765: GPI-anchor transamidase complex	2.22E-04
6	GO:0000795: synaptonemal complex	5.52E-04
7	GO:0000815: ESCRT III complex	8.05E-04
8	GO:0009507: chloroplast	1.43E-03
9	GO:0000785: chromatin	5.86E-03
10	GO:0015934: large ribosomal subunit	9.61E-03
11	GO:0009941: chloroplast envelope	1.36E-02
12	GO:0005635: nuclear envelope	1.59E-02
13	GO:0009706: chloroplast inner membrane	1.94E-02
14	GO:0005654: nucleoplasm	2.24E-02
15	GO:0005886: plasma membrane	2.83E-02
16	GO:0031969: chloroplast membrane	4.56E-02