Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G15400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000469: negative regulation of peroxidase activity0.00E+00
2GO:0010081: regulation of inflorescence meristem growth0.00E+00
3GO:0045176: apical protein localization0.00E+00
4GO:0071000: response to magnetism0.00E+00
5GO:0009583: detection of light stimulus0.00E+00
6GO:0090697: post-embryonic plant organ morphogenesis0.00E+00
7GO:0000372: Group I intron splicing0.00E+00
8GO:0007037: vacuolar phosphate transport0.00E+00
9GO:0080127: fruit septum development0.00E+00
10GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
11GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
12GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
13GO:0006573: valine metabolic process0.00E+00
14GO:1905177: tracheary element differentiation0.00E+00
15GO:0000373: Group II intron splicing1.78E-06
16GO:1900865: chloroplast RNA modification2.69E-06
17GO:1900871: chloroplast mRNA modification1.34E-05
18GO:0046620: regulation of organ growth3.59E-05
19GO:0045037: protein import into chloroplast stroma1.73E-04
20GO:0010582: floral meristem determinacy1.73E-04
21GO:0045038: protein import into chloroplast thylakoid membrane2.50E-04
22GO:0016554: cytidine to uridine editing3.52E-04
23GO:0005992: trehalose biosynthetic process3.89E-04
24GO:0043087: regulation of GTPase activity5.54E-04
25GO:2000021: regulation of ion homeostasis5.54E-04
26GO:0043609: regulation of carbon utilization5.54E-04
27GO:0051247: positive regulation of protein metabolic process5.54E-04
28GO:0000066: mitochondrial ornithine transport5.54E-04
29GO:1902458: positive regulation of stomatal opening5.54E-04
30GO:0015904: tetracycline transport5.54E-04
31GO:2000905: negative regulation of starch metabolic process5.54E-04
32GO:0034757: negative regulation of iron ion transport5.54E-04
33GO:0000305: response to oxygen radical5.54E-04
34GO:0006419: alanyl-tRNA aminoacylation5.54E-04
35GO:0009090: homoserine biosynthetic process5.54E-04
36GO:0043266: regulation of potassium ion transport5.54E-04
37GO:0010080: regulation of floral meristem growth5.54E-04
38GO:0006551: leucine metabolic process5.54E-04
39GO:0072387: flavin adenine dinucleotide metabolic process5.54E-04
40GO:2000070: regulation of response to water deprivation7.46E-04
41GO:0009733: response to auxin7.84E-04
42GO:0009416: response to light stimulus8.29E-04
43GO:0009926: auxin polar transport9.53E-04
44GO:0080009: mRNA methylation1.19E-03
45GO:1903426: regulation of reactive oxygen species biosynthetic process1.19E-03
46GO:0010024: phytochromobilin biosynthetic process1.19E-03
47GO:0010343: singlet oxygen-mediated programmed cell death1.19E-03
48GO:1901529: positive regulation of anion channel activity1.19E-03
49GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole1.19E-03
50GO:0060359: response to ammonium ion1.19E-03
51GO:0010617: circadian regulation of calcium ion oscillation1.19E-03
52GO:0048255: mRNA stabilization1.19E-03
53GO:0010271: regulation of chlorophyll catabolic process1.19E-03
54GO:1901959: positive regulation of cutin biosynthetic process1.19E-03
55GO:0006432: phenylalanyl-tRNA aminoacylation1.19E-03
56GO:0099402: plant organ development1.19E-03
57GO:0001736: establishment of planar polarity1.19E-03
58GO:0009086: methionine biosynthetic process1.28E-03
59GO:0009451: RNA modification1.47E-03
60GO:0043157: response to cation stress1.96E-03
61GO:0071398: cellular response to fatty acid1.96E-03
62GO:2001295: malonyl-CoA biosynthetic process1.96E-03
63GO:0030029: actin filament-based process1.96E-03
64GO:0080117: secondary growth1.96E-03
65GO:1902448: positive regulation of shade avoidance1.96E-03
66GO:0048586: regulation of long-day photoperiodism, flowering1.96E-03
67GO:0006000: fructose metabolic process1.96E-03
68GO:0006788: heme oxidation1.96E-03
69GO:0010623: programmed cell death involved in cell development1.96E-03
70GO:0010022: meristem determinacy1.96E-03
71GO:1901672: positive regulation of systemic acquired resistance1.96E-03
72GO:1904278: positive regulation of wax biosynthetic process1.96E-03
73GO:0090153: regulation of sphingolipid biosynthetic process1.96E-03
74GO:0009725: response to hormone2.25E-03
75GO:0006094: gluconeogenesis2.25E-03
76GO:0010207: photosystem II assembly2.54E-03
77GO:0016556: mRNA modification2.84E-03
78GO:0046836: glycolipid transport2.84E-03
79GO:0009067: aspartate family amino acid biosynthetic process2.84E-03
80GO:0010371: regulation of gibberellin biosynthetic process2.84E-03
81GO:0051513: regulation of monopolar cell growth2.84E-03
82GO:0051639: actin filament network formation2.84E-03
83GO:0034059: response to anoxia2.84E-03
84GO:0009800: cinnamic acid biosynthetic process2.84E-03
85GO:0044211: CTP salvage2.84E-03
86GO:0019048: modulation by virus of host morphology or physiology2.84E-03
87GO:1901332: negative regulation of lateral root development2.84E-03
88GO:2000904: regulation of starch metabolic process2.84E-03
89GO:0031048: chromatin silencing by small RNA2.84E-03
90GO:1990019: protein storage vacuole organization2.84E-03
91GO:0051017: actin filament bundle assembly3.53E-03
92GO:0009755: hormone-mediated signaling pathway3.83E-03
93GO:0051764: actin crosslink formation3.83E-03
94GO:2000306: positive regulation of photomorphogenesis3.83E-03
95GO:0045723: positive regulation of fatty acid biosynthetic process3.83E-03
96GO:0051567: histone H3-K9 methylation3.83E-03
97GO:0010508: positive regulation of autophagy3.83E-03
98GO:1902347: response to strigolactone3.83E-03
99GO:0008295: spermidine biosynthetic process3.83E-03
100GO:0044206: UMP salvage3.83E-03
101GO:0006749: glutathione metabolic process3.83E-03
102GO:0016123: xanthophyll biosynthetic process4.91E-03
103GO:0010438: cellular response to sulfur starvation4.91E-03
104GO:0010158: abaxial cell fate specification4.91E-03
105GO:0080110: sporopollenin biosynthetic process4.91E-03
106GO:0016131: brassinosteroid metabolic process4.91E-03
107GO:0010117: photoprotection4.91E-03
108GO:0046283: anthocyanin-containing compound metabolic process4.91E-03
109GO:0009734: auxin-activated signaling pathway5.11E-03
110GO:0040008: regulation of growth5.55E-03
111GO:0009644: response to high light intensity5.77E-03
112GO:0009636: response to toxic substance6.06E-03
113GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione6.09E-03
114GO:0048827: phyllome development6.09E-03
115GO:0009959: negative gravitropism6.09E-03
116GO:0006555: methionine metabolic process6.09E-03
117GO:0060918: auxin transport6.09E-03
118GO:1902456: regulation of stomatal opening6.09E-03
119GO:0048831: regulation of shoot system development6.09E-03
120GO:0010190: cytochrome b6f complex assembly6.09E-03
121GO:0003006: developmental process involved in reproduction6.09E-03
122GO:0009920: cell plate formation involved in plant-type cell wall biogenesis6.09E-03
123GO:1901371: regulation of leaf morphogenesis6.09E-03
124GO:0006559: L-phenylalanine catabolic process6.09E-03
125GO:0006206: pyrimidine nucleobase metabolic process6.09E-03
126GO:0016458: gene silencing6.09E-03
127GO:0010087: phloem or xylem histogenesis6.56E-03
128GO:0010118: stomatal movement6.56E-03
129GO:0010182: sugar mediated signaling pathway7.07E-03
130GO:0009958: positive gravitropism7.07E-03
131GO:0009088: threonine biosynthetic process7.36E-03
132GO:0009648: photoperiodism7.36E-03
133GO:0010310: regulation of hydrogen peroxide metabolic process7.36E-03
134GO:0009082: branched-chain amino acid biosynthetic process7.36E-03
135GO:0010244: response to low fluence blue light stimulus by blue low-fluence system7.36E-03
136GO:0048509: regulation of meristem development7.36E-03
137GO:0009099: valine biosynthetic process7.36E-03
138GO:0031930: mitochondria-nucleus signaling pathway7.36E-03
139GO:0009646: response to absence of light7.61E-03
140GO:0006955: immune response8.71E-03
141GO:0010098: suspensor development8.71E-03
142GO:0010050: vegetative phase change8.71E-03
143GO:0000122: negative regulation of transcription from RNA polymerase II promoter8.71E-03
144GO:0006400: tRNA modification8.71E-03
145GO:0051510: regulation of unidimensional cell growth8.71E-03
146GO:0030307: positive regulation of cell growth8.71E-03
147GO:0010583: response to cyclopentenone9.36E-03
148GO:0045010: actin nucleation1.01E-02
149GO:0048564: photosystem I assembly1.01E-02
150GO:0010439: regulation of glucosinolate biosynthetic process1.01E-02
151GO:0009850: auxin metabolic process1.01E-02
152GO:0009819: drought recovery1.01E-02
153GO:0070413: trehalose metabolism in response to stress1.01E-02
154GO:0009658: chloroplast organization1.16E-02
155GO:0006002: fructose 6-phosphate metabolic process1.17E-02
156GO:0015996: chlorophyll catabolic process1.17E-02
157GO:0007186: G-protein coupled receptor signaling pathway1.17E-02
158GO:0009097: isoleucine biosynthetic process1.17E-02
159GO:0010497: plasmodesmata-mediated intercellular transport1.17E-02
160GO:0009657: plastid organization1.17E-02
161GO:0051607: defense response to virus1.20E-02
162GO:0010027: thylakoid membrane organization1.27E-02
163GO:0009051: pentose-phosphate shunt, oxidative branch1.33E-02
164GO:0090305: nucleic acid phosphodiester bond hydrolysis1.33E-02
165GO:0006098: pentose-phosphate shunt1.33E-02
166GO:0048507: meristem development1.33E-02
167GO:0010029: regulation of seed germination1.35E-02
168GO:0016573: histone acetylation1.49E-02
169GO:1900426: positive regulation of defense response to bacterium1.49E-02
170GO:0009638: phototropism1.49E-02
171GO:0035999: tetrahydrofolate interconversion1.49E-02
172GO:0016571: histone methylation1.49E-02
173GO:0010018: far-red light signaling pathway1.49E-02
174GO:0031425: chloroplast RNA processing1.49E-02
175GO:0018298: protein-chromophore linkage1.66E-02
176GO:0030422: production of siRNA involved in RNA interference1.67E-02
177GO:0048829: root cap development1.67E-02
178GO:0016441: posttranscriptional gene silencing1.67E-02
179GO:0006949: syncytium formation1.67E-02
180GO:0006259: DNA metabolic process1.67E-02
181GO:0031627: telomeric loop formation1.67E-02
182GO:0009299: mRNA transcription1.67E-02
183GO:0006535: cysteine biosynthetic process from serine1.67E-02
184GO:0000160: phosphorelay signal transduction system1.75E-02
185GO:0048765: root hair cell differentiation1.85E-02
186GO:0006265: DNA topological change1.85E-02
187GO:0009089: lysine biosynthetic process via diaminopimelate1.85E-02
188GO:0009682: induced systemic resistance1.85E-02
189GO:0006415: translational termination1.85E-02
190GO:0006865: amino acid transport2.02E-02
191GO:0010105: negative regulation of ethylene-activated signaling pathway2.04E-02
192GO:0006633: fatty acid biosynthetic process2.14E-02
193GO:0009691: cytokinin biosynthetic process2.23E-02
194GO:0010229: inflorescence development2.23E-02
195GO:0030036: actin cytoskeleton organization2.23E-02
196GO:0010075: regulation of meristem growth2.23E-02
197GO:0010588: cotyledon vascular tissue pattern formation2.23E-02
198GO:0009785: blue light signaling pathway2.23E-02
199GO:0006006: glucose metabolic process2.23E-02
200GO:0006839: mitochondrial transport2.41E-02
201GO:0009887: animal organ morphogenesis2.43E-02
202GO:0010540: basipetal auxin transport2.43E-02
203GO:0009266: response to temperature stimulus2.43E-02
204GO:0048467: gynoecium development2.43E-02
205GO:0007166: cell surface receptor signaling pathway2.84E-02
206GO:0042753: positive regulation of circadian rhythm2.85E-02
207GO:0006397: mRNA processing3.05E-02
208GO:0009793: embryo development ending in seed dormancy3.05E-02
209GO:2000377: regulation of reactive oxygen species metabolic process3.07E-02
210GO:0019344: cysteine biosynthetic process3.07E-02
211GO:0006338: chromatin remodeling3.07E-02
212GO:0010431: seed maturation3.52E-02
213GO:0006306: DNA methylation3.52E-02
214GO:0003333: amino acid transmembrane transport3.52E-02
215GO:0016998: cell wall macromolecule catabolic process3.52E-02
216GO:0009736: cytokinin-activated signaling pathway3.68E-02
217GO:0030245: cellulose catabolic process3.75E-02
218GO:0006730: one-carbon metabolic process3.75E-02
219GO:0009625: response to insect3.99E-02
220GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.99E-02
221GO:0010082: regulation of root meristem growth3.99E-02
222GO:0009693: ethylene biosynthetic process3.99E-02
223GO:0071215: cellular response to abscisic acid stimulus3.99E-02
224GO:0010089: xylem development4.24E-02
225GO:0010584: pollen exine formation4.24E-02
226GO:0006284: base-excision repair4.24E-02
227GO:0019722: calcium-mediated signaling4.24E-02
228GO:0048316: seed development4.48E-02
229GO:0070417: cellular response to cold4.49E-02
230GO:0080022: primary root development4.74E-02
231GO:0008033: tRNA processing4.74E-02
232GO:0010501: RNA secondary structure unwinding4.74E-02
233GO:0007275: multicellular organism development4.80E-02
234GO:0009740: gibberellic acid mediated signaling pathway4.91E-02
235GO:0009723: response to ethylene4.94E-02
236GO:0048868: pollen tube development5.00E-02
237GO:0006342: chromatin silencing5.00E-02
238GO:0009741: response to brassinosteroid5.00E-02
239GO:0010268: brassinosteroid homeostasis5.00E-02
240GO:0010305: leaf vascular tissue pattern formation5.00E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0003723: RNA binding9.34E-06
6GO:0001872: (1->3)-beta-D-glucan binding9.53E-05
7GO:0004805: trehalose-phosphatase activity1.13E-04
8GO:0004519: endonuclease activity2.40E-04
9GO:0005227: calcium activated cation channel activity5.54E-04
10GO:0042834: peptidoglycan binding5.54E-04
11GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.54E-04
12GO:0003984: acetolactate synthase activity5.54E-04
13GO:0004813: alanine-tRNA ligase activity5.54E-04
14GO:0005290: L-histidine transmembrane transporter activity5.54E-04
15GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity5.54E-04
16GO:0008158: hedgehog receptor activity5.54E-04
17GO:0008395: steroid hydroxylase activity5.54E-04
18GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity5.54E-04
19GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.54E-04
20GO:0052381: tRNA dimethylallyltransferase activity5.54E-04
21GO:0050017: L-3-cyanoalanine synthase activity1.19E-03
22GO:0017118: lipoyltransferase activity1.19E-03
23GO:0004362: glutathione-disulfide reductase activity1.19E-03
24GO:0043425: bHLH transcription factor binding1.19E-03
25GO:0004766: spermidine synthase activity1.19E-03
26GO:0008493: tetracycline transporter activity1.19E-03
27GO:0000064: L-ornithine transmembrane transporter activity1.19E-03
28GO:0004826: phenylalanine-tRNA ligase activity1.19E-03
29GO:0004412: homoserine dehydrogenase activity1.19E-03
30GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.19E-03
31GO:0050736: O-malonyltransferase activity1.19E-03
32GO:0009884: cytokinin receptor activity1.19E-03
33GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.61E-03
34GO:0016597: amino acid binding1.84E-03
35GO:0005034: osmosensor activity1.96E-03
36GO:0045548: phenylalanine ammonia-lyase activity1.96E-03
37GO:0003913: DNA photolyase activity1.96E-03
38GO:0004148: dihydrolipoyl dehydrogenase activity1.96E-03
39GO:0000976: transcription regulatory region sequence-specific DNA binding1.98E-03
40GO:0000049: tRNA binding1.98E-03
41GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.54E-03
42GO:0009882: blue light photoreceptor activity2.84E-03
43GO:0015189: L-lysine transmembrane transporter activity2.84E-03
44GO:0017089: glycolipid transporter activity2.84E-03
45GO:0004072: aspartate kinase activity2.84E-03
46GO:0016149: translation release factor activity, codon specific2.84E-03
47GO:0015181: arginine transmembrane transporter activity2.84E-03
48GO:0035197: siRNA binding2.84E-03
49GO:0004222: metalloendopeptidase activity3.15E-03
50GO:0031418: L-ascorbic acid binding3.53E-03
51GO:0004845: uracil phosphoribosyltransferase activity3.83E-03
52GO:0010011: auxin binding3.83E-03
53GO:0004345: glucose-6-phosphate dehydrogenase activity3.83E-03
54GO:0051861: glycolipid binding3.83E-03
55GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.83E-03
56GO:0010328: auxin influx transmembrane transporter activity3.83E-03
57GO:0004392: heme oxygenase (decyclizing) activity3.83E-03
58GO:0050661: NADP binding4.45E-03
59GO:0005471: ATP:ADP antiporter activity4.91E-03
60GO:0003989: acetyl-CoA carboxylase activity4.91E-03
61GO:0008725: DNA-3-methyladenine glycosylase activity4.91E-03
62GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.91E-03
63GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.36E-03
64GO:2001070: starch binding6.09E-03
65GO:0004332: fructose-bisphosphate aldolase activity6.09E-03
66GO:0004709: MAP kinase kinase kinase activity6.09E-03
67GO:0004462: lactoylglutathione lyase activity6.09E-03
68GO:0004871: signal transducer activity6.65E-03
69GO:0019900: kinase binding7.36E-03
70GO:0004124: cysteine synthase activity7.36E-03
71GO:0004849: uridine kinase activity7.36E-03
72GO:0016832: aldehyde-lyase activity7.36E-03
73GO:0004656: procollagen-proline 4-dioxygenase activity7.36E-03
74GO:0042802: identical protein binding8.59E-03
75GO:0009881: photoreceptor activity8.71E-03
76GO:0051015: actin filament binding9.99E-03
77GO:0043022: ribosome binding1.01E-02
78GO:0003724: RNA helicase activity1.17E-02
79GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.17E-02
80GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.33E-02
81GO:0003747: translation release factor activity1.33E-02
82GO:0071949: FAD binding1.33E-02
83GO:0004721: phosphoprotein phosphatase activity1.50E-02
84GO:0030247: polysaccharide binding1.50E-02
85GO:0004673: protein histidine kinase activity1.67E-02
86GO:0005096: GTPase activator activity1.75E-02
87GO:0005089: Rho guanyl-nucleotide exchange factor activity1.85E-02
88GO:0003691: double-stranded telomeric DNA binding1.85E-02
89GO:0004521: endoribonuclease activity2.04E-02
90GO:0000155: phosphorelay sensor kinase activity2.23E-02
91GO:0009982: pseudouridine synthase activity2.23E-02
92GO:0008146: sulfotransferase activity2.64E-02
93GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.85E-02
94GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.85E-02
95GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.85E-02
96GO:0043424: protein histidine kinase binding3.29E-02
97GO:0005345: purine nucleobase transmembrane transporter activity3.29E-02
98GO:0005524: ATP binding3.39E-02
99GO:0003964: RNA-directed DNA polymerase activity3.52E-02
100GO:0003690: double-stranded DNA binding3.80E-02
101GO:0030570: pectate lyase activity3.99E-02
102GO:0008810: cellulase activity3.99E-02
103GO:0003777: microtubule motor activity4.07E-02
104GO:0015171: amino acid transmembrane transporter activity4.07E-02
105GO:0050660: flavin adenine dinucleotide binding4.94E-02
RankGO TermAdjusted P value
1GO:0005948: acetolactate synthase complex0.00E+00
2GO:0000408: EKC/KEOPS complex0.00E+00
3GO:0009507: chloroplast2.99E-10
4GO:0046658: anchored component of plasma membrane5.70E-04
5GO:0009570: chloroplast stroma1.18E-03
6GO:0080085: signal recognition particle, chloroplast targeting1.19E-03
7GO:0009317: acetyl-CoA carboxylase complex1.96E-03
8GO:0016605: PML body1.96E-03
9GO:0009528: plastid inner membrane1.96E-03
10GO:0009706: chloroplast inner membrane2.58E-03
11GO:0032432: actin filament bundle2.84E-03
12GO:0005719: nuclear euchromatin2.84E-03
13GO:0009527: plastid outer membrane3.83E-03
14GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)3.83E-03
15GO:0009532: plastid stroma4.30E-03
16GO:0031209: SCAR complex6.09E-03
17GO:0031225: anchored component of membrane6.88E-03
18GO:0009986: cell surface8.71E-03
19GO:0000783: nuclear telomere cap complex1.17E-02
20GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.17E-02
21GO:0030529: intracellular ribonucleoprotein complex1.27E-02
22GO:0010494: cytoplasmic stress granule1.33E-02
23GO:0015030: Cajal body1.49E-02
24GO:0016604: nuclear body1.49E-02
25GO:0005623: cell1.65E-02
26GO:0005884: actin filament1.85E-02
27GO:0005578: proteinaceous extracellular matrix2.23E-02
28GO:0009574: preprophase band2.23E-02
29GO:0030095: chloroplast photosystem II2.43E-02
30GO:0009535: chloroplast thylakoid membrane2.84E-02
31GO:0005856: cytoskeleton3.07E-02
32GO:0009654: photosystem II oxygen evolving complex3.29E-02
33GO:0042651: thylakoid membrane3.29E-02
34GO:0015629: actin cytoskeleton3.99E-02
35GO:0009536: plastid4.49E-02
36GO:0005871: kinesin complex4.49E-02
37GO:0005770: late endosome5.00E-02
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Gene type



Gene DE type