co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G15115

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0043392: negative regulation of DNA binding	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0046620: regulation of organ growth	5.93E-06
6	GO:0009733: response to auxin	1.03E-04
7	GO:0009741: response to brassinosteroid	2.34E-04
8	GO:0015904: tetracycline transport	2.68E-04
9	GO:0000025: maltose catabolic process	2.68E-04
10	GO:0030198: extracellular matrix organization	2.68E-04
11	GO:0046520: sphingoid biosynthetic process	2.68E-04
12	GO:0010480: microsporocyte differentiation	2.68E-04
13	GO:0006568: tryptophan metabolic process	5.89E-04
14	GO:0006741: NADP biosynthetic process	5.89E-04
15	GO:0071497: cellular response to freezing	5.89E-04
16	GO:1900033: negative regulation of trichome patterning	5.89E-04
17	GO:0031648: protein destabilization	5.89E-04
18	GO:0010102: lateral root morphogenesis	7.86E-04
19	GO:0009416: response to light stimulus	9.22E-04
20	GO:0019674: NAD metabolic process	9.55E-04
21	GO:0090506: axillary shoot meristem initiation	9.55E-04
22	GO:0033591: response to L-ascorbic acid	9.55E-04
23	GO:0071398: cellular response to fatty acid	9.55E-04
24	GO:0010371: regulation of gibberellin biosynthetic process	1.36E-03
25	GO:0010321: regulation of vegetative phase change	1.36E-03
26	GO:0019363: pyridine nucleotide biosynthetic process	1.36E-03
27	GO:0009686: gibberellin biosynthetic process	1.74E-03
28	GO:0042274: ribosomal small subunit biogenesis	1.83E-03
29	GO:1902347: response to strigolactone	1.83E-03
30	GO:0042938: dipeptide transport	1.83E-03
31	GO:0009755: hormone-mediated signaling pathway	1.83E-03
32	GO:1901141: regulation of lignin biosynthetic process	1.83E-03
33	GO:0048629: trichome patterning	1.83E-03
34	GO:0010438: cellular response to sulfur starvation	2.33E-03
35	GO:0045487: gibberellin catabolic process	2.33E-03
36	GO:0016131: brassinosteroid metabolic process	2.33E-03
37	GO:0048497: maintenance of floral organ identity	2.33E-03
38	GO:0009734: auxin-activated signaling pathway	2.36E-03
39	GO:0010268: brassinosteroid homeostasis	2.39E-03
40	GO:0042549: photosystem II stabilization	2.88E-03
41	GO:0009959: negative gravitropism	2.88E-03
42	GO:0010358: leaf shaping	2.88E-03
43	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.88E-03
44	GO:0009913: epidermal cell differentiation	2.88E-03
45	GO:1902456: regulation of stomatal opening	2.88E-03
46	GO:0010405: arabinogalactan protein metabolic process	2.88E-03
47	GO:0032502: developmental process	3.14E-03
48	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.20E-03
49	GO:1901657: glycosyl compound metabolic process	3.35E-03
50	GO:0031930: mitochondria-nucleus signaling pathway	3.46E-03
51	GO:0009082: branched-chain amino acid biosynthetic process	3.46E-03
52	GO:0048509: regulation of meristem development	3.46E-03
53	GO:0009099: valine biosynthetic process	3.46E-03
54	GO:0030488: tRNA methylation	3.46E-03
55	GO:0010161: red light signaling pathway	4.08E-03
56	GO:0048437: floral organ development	4.08E-03
57	GO:0045892: negative regulation of transcription, DNA-templated	4.10E-03
58	GO:0009819: drought recovery	4.73E-03
59	GO:0006402: mRNA catabolic process	4.73E-03
60	GO:0010439: regulation of glucosinolate biosynthetic process	4.73E-03
61	GO:0009690: cytokinin metabolic process	4.73E-03
62	GO:0009704: de-etiolation	4.73E-03
63	GO:2000070: regulation of response to water deprivation	4.73E-03
64	GO:0010099: regulation of photomorphogenesis	5.42E-03
65	GO:0009097: isoleucine biosynthetic process	5.42E-03
66	GO:0010100: negative regulation of photomorphogenesis	5.42E-03
67	GO:0040008: regulation of growth	5.64E-03
68	GO:0009753: response to jasmonic acid	6.12E-03
69	GO:0051865: protein autoubiquitination	6.14E-03
70	GO:0006783: heme biosynthetic process	6.14E-03
71	GO:0000902: cell morphogenesis	6.14E-03
72	GO:0009098: leucine biosynthetic process	6.90E-03
73	GO:0031425: chloroplast RNA processing	6.90E-03
74	GO:0009739: response to gibberellin	6.90E-03
75	GO:0009867: jasmonic acid mediated signaling pathway	7.02E-03
76	GO:0016441: posttranscriptional gene silencing	7.68E-03
77	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.68E-03
78	GO:0009641: shade avoidance	7.68E-03
79	GO:0006631: fatty acid metabolic process	8.35E-03
80	GO:0010015: root morphogenesis	8.50E-03
81	GO:0000038: very long-chain fatty acid metabolic process	8.50E-03
82	GO:0009682: induced systemic resistance	8.50E-03
83	GO:0048229: gametophyte development	8.50E-03
84	GO:0009640: photomorphogenesis	9.06E-03
85	GO:0009926: auxin polar transport	9.06E-03
86	GO:0012501: programmed cell death	9.35E-03
87	GO:0005983: starch catabolic process	9.35E-03
88	GO:0015706: nitrate transport	9.35E-03
89	GO:0010105: negative regulation of ethylene-activated signaling pathway	9.35E-03
90	GO:0009767: photosynthetic electron transport chain	1.02E-02
91	GO:0010588: cotyledon vascular tissue pattern formation	1.02E-02
92	GO:0010628: positive regulation of gene expression	1.02E-02
93	GO:0006006: glucose metabolic process	1.02E-02
94	GO:2000028: regulation of photoperiodism, flowering	1.02E-02
95	GO:0010075: regulation of meristem growth	1.02E-02
96	GO:0009934: regulation of meristem structural organization	1.11E-02
97	GO:0010223: secondary shoot formation	1.11E-02
98	GO:0090351: seedling development	1.21E-02
99	GO:0016567: protein ubiquitination	1.23E-02
100	GO:0019762: glucosinolate catabolic process	1.30E-02
101	GO:0006857: oligopeptide transport	1.31E-02
102	GO:0010187: negative regulation of seed germination	1.40E-02
103	GO:0080147: root hair cell development	1.40E-02
104	GO:0005992: trehalose biosynthetic process	1.40E-02
105	GO:0010431: seed maturation	1.61E-02
106	GO:0006306: DNA methylation	1.61E-02
107	GO:0048278: vesicle docking	1.61E-02
108	GO:0016114: terpenoid biosynthetic process	1.61E-02
109	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.71E-02
110	GO:0031348: negative regulation of defense response	1.71E-02
111	GO:0009693: ethylene biosynthetic process	1.82E-02
112	GO:0071215: cellular response to abscisic acid stimulus	1.82E-02
113	GO:0001944: vasculature development	1.82E-02
114	GO:0009625: response to insect	1.82E-02
115	GO:0045492: xylan biosynthetic process	1.94E-02
116	GO:0010118: stomatal movement	2.17E-02
117	GO:0048653: anther development	2.17E-02
118	GO:0042335: cuticle development	2.17E-02
119	GO:0080022: primary root development	2.17E-02
120	GO:0010087: phloem or xylem histogenesis	2.17E-02
121	GO:0009960: endosperm development	2.29E-02
122	GO:0010305: leaf vascular tissue pattern formation	2.29E-02
123	GO:0010182: sugar mediated signaling pathway	2.29E-02
124	GO:0061025: membrane fusion	2.41E-02
125	GO:0006351: transcription, DNA-templated	2.46E-02
126	GO:0048825: cotyledon development	2.53E-02
127	GO:0071554: cell wall organization or biogenesis	2.65E-02
128	GO:0016132: brassinosteroid biosynthetic process	2.65E-02
129	GO:0010583: response to cyclopentenone	2.78E-02
130	GO:0030163: protein catabolic process	2.91E-02
131	GO:0009567: double fertilization forming a zygote and endosperm	3.04E-02
132	GO:0016125: sterol metabolic process	3.04E-02
133	GO:0010252: auxin homeostasis	3.04E-02
134	GO:0009451: RNA modification	3.09E-02
135	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.19E-02
136	GO:0010027: thylakoid membrane organization	3.45E-02
137	GO:0010029: regulation of seed germination	3.59E-02
138	GO:0006906: vesicle fusion	3.73E-02
139	GO:0015995: chlorophyll biosynthetic process	3.88E-02
140	GO:0048573: photoperiodism, flowering	3.88E-02
141	GO:0007165: signal transduction	4.16E-02
142	GO:0030154: cell differentiation	4.22E-02
143	GO:0000160: phosphorelay signal transduction system	4.32E-02
144	GO:0009631: cold acclimation	4.62E-02
145	GO:0048527: lateral root development	4.62E-02
146	GO:0006865: amino acid transport	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0005201: extracellular matrix structural constituent	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0000170: sphingosine hydroxylase activity	2.68E-04
4	GO:0050139: nicotinate-N-glucosyltransferase activity	2.68E-04
5	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.68E-04
6	GO:0010313: phytochrome binding	2.68E-04
7	GO:0004134: 4-alpha-glucanotransferase activity	2.68E-04
8	GO:0008395: steroid hydroxylase activity	2.68E-04
9	GO:0042736: NADH kinase activity	2.68E-04
10	GO:0010012: steroid 22-alpha hydroxylase activity	2.68E-04
11	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.89E-04
12	GO:0042284: sphingolipid delta-4 desaturase activity	5.89E-04
13	GO:0008493: tetracycline transporter activity	5.89E-04
14	GO:0045543: gibberellin 2-beta-dioxygenase activity	5.89E-04
15	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.25E-04
16	GO:0052655: L-valine transaminase activity	1.36E-03
17	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.36E-03
18	GO:0052656: L-isoleucine transaminase activity	1.36E-03
19	GO:0052654: L-leucine transaminase activity	1.36E-03
20	GO:0033612: receptor serine/threonine kinase binding	1.46E-03
21	GO:0042936: dipeptide transporter activity	1.83E-03
22	GO:0004084: branched-chain-amino-acid transaminase activity	1.83E-03
23	GO:0046556: alpha-L-arabinofuranosidase activity	1.83E-03
24	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.87E-03
25	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.33E-03
26	GO:0080030: methyl indole-3-acetate esterase activity	2.88E-03
27	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.88E-03
28	GO:0004709: MAP kinase kinase kinase activity	2.88E-03
29	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	2.88E-03
30	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.46E-03
31	GO:0016832: aldehyde-lyase activity	3.46E-03
32	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	3.46E-03
33	GO:0004871: signal transducer activity	4.30E-03
34	GO:0102483: scopolin beta-glucosidase activity	5.00E-03
35	GO:0003951: NAD+ kinase activity	5.42E-03
36	GO:0008173: RNA methyltransferase activity	5.42E-03
37	GO:0009055: electron carrier activity	6.12E-03
38	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.14E-03
39	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	6.40E-03
40	GO:0008422: beta-glucosidase activity	7.67E-03
41	GO:0004805: trehalose-phosphatase activity	7.68E-03
42	GO:0030234: enzyme regulator activity	7.68E-03
43	GO:0016788: hydrolase activity, acting on ester bonds	1.07E-02
44	GO:0005506: iron ion binding	1.18E-02
45	GO:0008146: sulfotransferase activity	1.21E-02
46	GO:0003712: transcription cofactor activity	1.21E-02
47	GO:0004190: aspartic-type endopeptidase activity	1.21E-02
48	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.30E-02
49	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.30E-02
50	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.30E-02
51	GO:0031418: L-ascorbic acid binding	1.40E-02
52	GO:0005345: purine nucleobase transmembrane transporter activity	1.50E-02
53	GO:0010333: terpene synthase activity	1.61E-02
54	GO:0003964: RNA-directed DNA polymerase activity	1.61E-02
55	GO:0016874: ligase activity	1.64E-02
56	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.72E-02
57	GO:0003727: single-stranded RNA binding	1.94E-02
58	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.97E-02
59	GO:0003677: DNA binding	2.21E-02
60	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.29E-02
61	GO:0001085: RNA polymerase II transcription factor binding	2.29E-02
62	GO:0005199: structural constituent of cell wall	2.29E-02
63	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.49E-02
64	GO:0004518: nuclease activity	2.78E-02
65	GO:0000156: phosphorelay response regulator activity	2.91E-02
66	GO:0016759: cellulose synthase activity	3.04E-02
67	GO:0005200: structural constituent of cytoskeleton	3.18E-02
68	GO:0016413: O-acetyltransferase activity	3.31E-02
69	GO:0005509: calcium ion binding	3.32E-02
70	GO:0044212: transcription regulatory region DNA binding	3.73E-02
71	GO:0003723: RNA binding	3.87E-02
72	GO:0005215: transporter activity	4.31E-02
73	GO:0015238: drug transmembrane transporter activity	4.32E-02
74	GO:0008168: methyltransferase activity	4.49E-02
75	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.62E-02
76	GO:0003682: chromatin binding	4.92E-02
77	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009654: photosystem II oxygen evolving complex	9.96E-05
2	GO:0019898: extrinsic component of membrane	2.85E-04
3	GO:0009544: chloroplast ATP synthase complex	1.83E-03
4	GO:0009501: amyloplast	4.73E-03
5	GO:0010494: cytoplasmic stress granule	6.14E-03
6	GO:0005578: proteinaceous extracellular matrix	1.02E-02
7	GO:0030095: chloroplast photosystem II	1.11E-02
8	GO:0010008: endosome membrane	1.50E-02
9	GO:0009534: chloroplast thylakoid	1.74E-02
10	GO:0005770: late endosome	2.29E-02
11	GO:0009504: cell plate	2.53E-02
12	GO:0031225: anchored component of membrane	2.55E-02
13	GO:0030529: intracellular ribonucleoprotein complex	3.45E-02
14	GO:0000932: P-body	3.45E-02
15	GO:0005667: transcription factor complex	3.73E-02
16	GO:0046658: anchored component of plasma membrane	3.99E-02