co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G15095

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0010068: protoderm histogenesis	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
5	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
6	GO:0032206: positive regulation of telomere maintenance	0.00E+00
7	GO:0006907: pinocytosis	0.00E+00
8	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
9	GO:0019685: photosynthesis, dark reaction	0.00E+00
10	GO:0009733: response to auxin	8.24E-06
11	GO:0009926: auxin polar transport	1.03E-05
12	GO:0046620: regulation of organ growth	2.80E-05
13	GO:0009734: auxin-activated signaling pathway	7.19E-05
14	GO:0010583: response to cyclopentenone	1.32E-04
15	GO:0010726: positive regulation of hydrogen peroxide metabolic process	5.00E-04
16	GO:0032958: inositol phosphate biosynthetic process	5.00E-04
17	GO:0043087: regulation of GTPase activity	5.00E-04
18	GO:0043609: regulation of carbon utilization	5.00E-04
19	GO:0051013: microtubule severing	5.00E-04
20	GO:0034757: negative regulation of iron ion transport	5.00E-04
21	GO:0009686: gibberellin biosynthetic process	5.20E-04
22	GO:0000373: Group II intron splicing	9.36E-04
23	GO:0061062: regulation of nematode larval development	1.08E-03
24	GO:0010271: regulation of chlorophyll catabolic process	1.08E-03
25	GO:0001736: establishment of planar polarity	1.08E-03
26	GO:0009786: regulation of asymmetric cell division	1.08E-03
27	GO:2000123: positive regulation of stomatal complex development	1.08E-03
28	GO:0043039: tRNA aminoacylation	1.08E-03
29	GO:0048829: root cap development	1.28E-03
30	GO:0045037: protein import into chloroplast stroma	1.70E-03
31	GO:0010582: floral meristem determinacy	1.70E-03
32	GO:0006000: fructose metabolic process	1.76E-03
33	GO:0080117: secondary growth	1.76E-03
34	GO:0048575: short-day photoperiodism, flowering	1.76E-03
35	GO:0045910: negative regulation of DNA recombination	1.76E-03
36	GO:0090506: axillary shoot meristem initiation	1.76E-03
37	GO:0009825: multidimensional cell growth	2.45E-03
38	GO:0034059: response to anoxia	2.56E-03
39	GO:0048645: animal organ formation	2.56E-03
40	GO:1990019: protein storage vacuole organization	2.56E-03
41	GO:2001141: regulation of RNA biosynthetic process	2.56E-03
42	GO:0010371: regulation of gibberellin biosynthetic process	2.56E-03
43	GO:0006020: inositol metabolic process	2.56E-03
44	GO:0051513: regulation of monopolar cell growth	2.56E-03
45	GO:0051639: actin filament network formation	2.56E-03
46	GO:0006863: purine nucleobase transport	2.73E-03
47	GO:0009765: photosynthesis, light harvesting	3.44E-03
48	GO:2000038: regulation of stomatal complex development	3.44E-03
49	GO:0009956: radial pattern formation	3.44E-03
50	GO:0051764: actin crosslink formation	3.44E-03
51	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.60E-03
52	GO:0009744: response to sucrose	4.27E-03
53	GO:0040008: regulation of growth	4.37E-03
54	GO:0010158: abaxial cell fate specification	4.41E-03
55	GO:0010375: stomatal complex patterning	4.41E-03
56	GO:0080110: sporopollenin biosynthetic process	4.41E-03
57	GO:0009696: salicylic acid metabolic process	4.41E-03
58	GO:0016120: carotene biosynthetic process	4.41E-03
59	GO:0045487: gibberellin catabolic process	4.41E-03
60	GO:0048497: maintenance of floral organ identity	4.41E-03
61	GO:0009107: lipoate biosynthetic process	4.41E-03
62	GO:0016123: xanthophyll biosynthetic process	4.41E-03
63	GO:0010358: leaf shaping	5.46E-03
64	GO:0016554: cytidine to uridine editing	5.46E-03
65	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.46E-03
66	GO:0009913: epidermal cell differentiation	5.46E-03
67	GO:1902456: regulation of stomatal opening	5.46E-03
68	GO:0048831: regulation of shoot system development	5.46E-03
69	GO:0003006: developmental process involved in reproduction	5.46E-03
70	GO:0010942: positive regulation of cell death	5.46E-03
71	GO:0010087: phloem or xylem histogenesis	5.60E-03
72	GO:0009958: positive gravitropism	6.04E-03
73	GO:0010305: leaf vascular tissue pattern formation	6.04E-03
74	GO:0009741: response to brassinosteroid	6.04E-03
75	GO:0009942: longitudinal axis specification	6.60E-03
76	GO:0048509: regulation of meristem development	6.60E-03
77	GO:0030488: tRNA methylation	6.60E-03
78	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	6.60E-03
79	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	6.60E-03
80	GO:0071554: cell wall organization or biogenesis	7.48E-03
81	GO:0010050: vegetative phase change	7.80E-03
82	GO:0010098: suspensor development	7.80E-03
83	GO:0000082: G1/S transition of mitotic cell cycle	7.80E-03
84	GO:0010444: guard mother cell differentiation	7.80E-03
85	GO:0032502: developmental process	7.99E-03
86	GO:0006402: mRNA catabolic process	9.09E-03
87	GO:0009850: auxin metabolic process	9.09E-03
88	GO:0009690: cytokinin metabolic process	9.09E-03
89	GO:0009793: embryo development ending in seed dormancy	9.12E-03
90	GO:0009624: response to nematode	9.83E-03
91	GO:0006002: fructose 6-phosphate metabolic process	1.04E-02
92	GO:0071482: cellular response to light stimulus	1.04E-02
93	GO:0007186: G-protein coupled receptor signaling pathway	1.04E-02
94	GO:0010497: plasmodesmata-mediated intercellular transport	1.04E-02
95	GO:0009657: plastid organization	1.04E-02
96	GO:0032544: plastid translation	1.04E-02
97	GO:0007389: pattern specification process	1.04E-02
98	GO:0051726: regulation of cell cycle	1.06E-02
99	GO:0006098: pentose-phosphate shunt	1.19E-02
100	GO:0048507: meristem development	1.19E-02
101	GO:0048589: developmental growth	1.19E-02
102	GO:0009056: catabolic process	1.19E-02
103	GO:0000723: telomere maintenance	1.34E-02
104	GO:1900865: chloroplast RNA modification	1.34E-02
105	GO:0005982: starch metabolic process	1.34E-02
106	GO:0009817: defense response to fungus, incompatible interaction	1.42E-02
107	GO:0010311: lateral root formation	1.49E-02
108	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.49E-02
109	GO:0006535: cysteine biosynthetic process from serine	1.49E-02
110	GO:0009832: plant-type cell wall biogenesis	1.49E-02
111	GO:0009641: shade avoidance	1.49E-02
112	GO:0006298: mismatch repair	1.49E-02
113	GO:0016441: posttranscriptional gene silencing	1.49E-02
114	GO:0000160: phosphorelay signal transduction system	1.49E-02
115	GO:0010192: mucilage biosynthetic process	1.49E-02
116	GO:0008285: negative regulation of cell proliferation	1.65E-02
117	GO:0006352: DNA-templated transcription, initiation	1.65E-02
118	GO:0009750: response to fructose	1.65E-02
119	GO:0048765: root hair cell differentiation	1.65E-02
120	GO:0007165: signal transduction	1.70E-02
121	GO:0005983: starch catabolic process	1.82E-02
122	GO:0010152: pollen maturation	1.82E-02
123	GO:0010588: cotyledon vascular tissue pattern formation	1.99E-02
124	GO:0030048: actin filament-based movement	1.99E-02
125	GO:0010102: lateral root morphogenesis	1.99E-02
126	GO:0010628: positive regulation of gene expression	1.99E-02
127	GO:2000028: regulation of photoperiodism, flowering	1.99E-02
128	GO:0009725: response to hormone	1.99E-02
129	GO:0006094: gluconeogenesis	1.99E-02
130	GO:0048467: gynoecium development	2.17E-02
131	GO:0010020: chloroplast fission	2.17E-02
132	GO:0009933: meristem structural organization	2.17E-02
133	GO:0010223: secondary shoot formation	2.17E-02
134	GO:0010540: basipetal auxin transport	2.17E-02
135	GO:0006468: protein phosphorylation	2.25E-02
136	GO:0007166: cell surface receptor signaling pathway	2.34E-02
137	GO:0042546: cell wall biogenesis	2.43E-02
138	GO:0009833: plant-type primary cell wall biogenesis	2.55E-02
139	GO:0009965: leaf morphogenesis	2.62E-02
140	GO:0051017: actin filament bundle assembly	2.74E-02
141	GO:0019344: cysteine biosynthetic process	2.74E-02
142	GO:0009664: plant-type cell wall organization	2.93E-02
143	GO:0006418: tRNA aminoacylation for protein translation	2.94E-02
144	GO:0043622: cortical microtubule organization	2.94E-02
145	GO:0009736: cytokinin-activated signaling pathway	3.14E-02
146	GO:0003333: amino acid transmembrane transport	3.15E-02
147	GO:0010431: seed maturation	3.15E-02
148	GO:0009826: unidimensional cell growth	3.25E-02
149	GO:0016226: iron-sulfur cluster assembly	3.35E-02
150	GO:0009658: chloroplast organization	3.41E-02
151	GO:0009909: regulation of flower development	3.48E-02
152	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.57E-02
153	GO:0071215: cellular response to abscisic acid stimulus	3.57E-02
154	GO:0010082: regulation of root meristem growth	3.57E-02
155	GO:0001944: vasculature development	3.57E-02
156	GO:0010584: pollen exine formation	3.79E-02
157	GO:0048443: stamen development	3.79E-02
158	GO:0006284: base-excision repair	3.79E-02
159	GO:0010091: trichome branching	3.79E-02
160	GO:0042127: regulation of cell proliferation	3.79E-02
161	GO:0048316: seed development	3.83E-02
162	GO:0048367: shoot system development	3.83E-02
163	GO:0070417: cellular response to cold	4.01E-02
164	GO:0016117: carotenoid biosynthetic process	4.01E-02
165	GO:0048366: leaf development	4.17E-02
166	GO:0009740: gibberellic acid mediated signaling pathway	4.20E-02
167	GO:0000226: microtubule cytoskeleton organization	4.24E-02
168	GO:0042335: cuticle development	4.24E-02
169	GO:0000271: polysaccharide biosynthetic process	4.24E-02
170	GO:0080022: primary root development	4.24E-02
171	GO:0010501: RNA secondary structure unwinding	4.24E-02
172	GO:0010118: stomatal movement	4.24E-02
173	GO:0045489: pectin biosynthetic process	4.47E-02
174	GO:0010182: sugar mediated signaling pathway	4.47E-02
175	GO:0010268: brassinosteroid homeostasis	4.47E-02
176	GO:0048544: recognition of pollen	4.71E-02
177	GO:0007018: microtubule-based movement	4.71E-02
178	GO:0048825: cotyledon development	4.94E-02
179	GO:0009749: response to glucose	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
6	GO:0010011: auxin binding	1.39E-04
7	GO:0000828: inositol hexakisphosphate kinase activity	5.00E-04
8	GO:0004831: tyrosine-tRNA ligase activity	5.00E-04
9	GO:0008568: microtubule-severing ATPase activity	5.00E-04
10	GO:0019203: carbohydrate phosphatase activity	5.00E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.00E-04
12	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	5.00E-04
13	GO:0010012: steroid 22-alpha hydroxylase activity	5.00E-04
14	GO:0000829: inositol heptakisphosphate kinase activity	5.00E-04
15	GO:0005227: calcium activated cation channel activity	5.00E-04
16	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.08E-03
17	GO:0008805: carbon-monoxide oxygenase activity	1.08E-03
18	GO:0009884: cytokinin receptor activity	1.08E-03
19	GO:0050017: L-3-cyanoalanine synthase activity	1.08E-03
20	GO:0017118: lipoyltransferase activity	1.08E-03
21	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.08E-03
22	GO:0010296: prenylcysteine methylesterase activity	1.08E-03
23	GO:0016415: octanoyltransferase activity	1.08E-03
24	GO:0004047: aminomethyltransferase activity	1.08E-03
25	GO:0003913: DNA photolyase activity	1.76E-03
26	GO:0004557: alpha-galactosidase activity	1.76E-03
27	GO:0005034: osmosensor activity	1.76E-03
28	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.76E-03
29	GO:0052692: raffinose alpha-galactosidase activity	1.76E-03
30	GO:0005096: GTPase activator activity	2.43E-03
31	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.56E-03
32	GO:0043047: single-stranded telomeric DNA binding	2.56E-03
33	GO:0080031: methyl salicylate esterase activity	2.56E-03
34	GO:0045544: gibberellin 20-oxidase activity	2.56E-03
35	GO:0001872: (1->3)-beta-D-glucan binding	2.56E-03
36	GO:0005345: purine nucleobase transmembrane transporter activity	3.34E-03
37	GO:0016987: sigma factor activity	3.44E-03
38	GO:0010328: auxin influx transmembrane transporter activity	3.44E-03
39	GO:0019199: transmembrane receptor protein kinase activity	3.44E-03
40	GO:0001053: plastid sigma factor activity	3.44E-03
41	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.44E-03
42	GO:0030570: pectate lyase activity	4.39E-03
43	GO:0008725: DNA-3-methyladenine glycosylase activity	4.41E-03
44	GO:0004871: signal transducer activity	5.05E-03
45	GO:0004332: fructose-bisphosphate aldolase activity	5.46E-03
46	GO:0004709: MAP kinase kinase kinase activity	5.46E-03
47	GO:2001070: starch binding	5.46E-03
48	GO:0030983: mismatched DNA binding	5.46E-03
49	GO:0080030: methyl indole-3-acetate esterase activity	5.46E-03
50	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	6.04E-03
51	GO:0016832: aldehyde-lyase activity	6.60E-03
52	GO:0019900: kinase binding	6.60E-03
53	GO:0004124: cysteine synthase activity	6.60E-03
54	GO:0019901: protein kinase binding	6.98E-03
55	GO:0042162: telomeric DNA binding	7.80E-03
56	GO:0009881: photoreceptor activity	7.80E-03
57	GO:0003779: actin binding	9.46E-03
58	GO:0016413: O-acetyltransferase activity	1.02E-02
59	GO:0003724: RNA helicase activity	1.04E-02
60	GO:0016301: kinase activity	1.06E-02
61	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.19E-02
62	GO:0030247: polysaccharide binding	1.28E-02
63	GO:0004674: protein serine/threonine kinase activity	1.30E-02
64	GO:0009672: auxin:proton symporter activity	1.34E-02
65	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.36E-02
66	GO:0004673: protein histidine kinase activity	1.49E-02
67	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.81E-02
68	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.97E-02
69	GO:0010329: auxin efflux transmembrane transporter activity	1.99E-02
70	GO:0000155: phosphorelay sensor kinase activity	1.99E-02
71	GO:0003774: motor activity	2.17E-02
72	GO:0003712: transcription cofactor activity	2.36E-02
73	GO:0043621: protein self-association	2.52E-02
74	GO:0008134: transcription factor binding	2.74E-02
75	GO:0051536: iron-sulfur cluster binding	2.74E-02
76	GO:0043424: protein histidine kinase binding	2.94E-02
77	GO:0015079: potassium ion transmembrane transporter activity	2.94E-02
78	GO:0033612: receptor serine/threonine kinase binding	3.15E-02
79	GO:0003964: RNA-directed DNA polymerase activity	3.15E-02
80	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.35E-02
81	GO:0016788: hydrolase activity, acting on ester bonds	3.49E-02
82	GO:0016760: cellulose synthase (UDP-forming) activity	3.57E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	4.01E-02
84	GO:0015035: protein disulfide oxidoreductase activity	4.59E-02
85	GO:0004672: protein kinase activity	4.68E-02
86	GO:0010181: FMN binding	4.71E-02
87	GO:0050662: coenzyme binding	4.71E-02
88	GO:0016853: isomerase activity	4.71E-02
89	GO:0004872: receptor activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0009986: cell surface	5.16E-04
4	GO:0005697: telomerase holoenzyme complex	1.08E-03
5	GO:0030139: endocytic vesicle	1.76E-03
6	GO:0032585: multivesicular body membrane	2.56E-03
7	GO:0032432: actin filament bundle	2.56E-03
8	GO:0009531: secondary cell wall	2.56E-03
9	GO:0005886: plasma membrane	5.37E-03
10	GO:0000784: nuclear chromosome, telomeric region	1.04E-02
11	GO:0010494: cytoplasmic stress granule	1.19E-02
12	GO:0009707: chloroplast outer membrane	1.42E-02
13	GO:0016459: myosin complex	1.49E-02
14	GO:0005884: actin filament	1.65E-02
15	GO:0009574: preprophase band	1.99E-02
16	GO:0005578: proteinaceous extracellular matrix	1.99E-02
17	GO:0030095: chloroplast photosystem II	2.17E-02
18	GO:0005875: microtubule associated complex	2.55E-02
19	GO:0009507: chloroplast	2.89E-02
20	GO:0009654: photosystem II oxygen evolving complex	2.94E-02
21	GO:0005871: kinesin complex	4.01E-02
22	GO:0005874: microtubule	4.26E-02
23	GO:0009706: chloroplast inner membrane	4.46E-02
24	GO:0009504: cell plate	4.94E-02
25	GO:0019898: extrinsic component of membrane	4.94E-02