co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G13690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:2000469: negative regulation of peroxidase activity	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0009733: response to auxin	1.05E-12
6	GO:0046620: regulation of organ growth	3.26E-09
7	GO:0009734: auxin-activated signaling pathway	1.72E-07
8	GO:0030307: positive regulation of cell growth	5.05E-05
9	GO:0051247: positive regulation of protein metabolic process	1.10E-04
10	GO:0015904: tetracycline transport	1.10E-04
11	GO:2000905: negative regulation of starch metabolic process	1.10E-04
12	GO:0000025: maltose catabolic process	1.10E-04
13	GO:0040008: regulation of growth	1.45E-04
14	GO:0010588: cotyledon vascular tissue pattern formation	2.30E-04
15	GO:1900871: chloroplast mRNA modification	2.57E-04
16	GO:0045717: negative regulation of fatty acid biosynthetic process	2.57E-04
17	GO:0015824: proline transport	2.57E-04
18	GO:0009926: auxin polar transport	2.70E-04
19	GO:0048586: regulation of long-day photoperiodism, flowering	4.25E-04
20	GO:0071398: cellular response to fatty acid	4.25E-04
21	GO:0090506: axillary shoot meristem initiation	4.25E-04
22	GO:0033591: response to L-ascorbic acid	4.25E-04
23	GO:0009740: gibberellic acid mediated signaling pathway	5.80E-04
24	GO:0009755: hormone-mediated signaling pathway	8.10E-04
25	GO:2000306: positive regulation of photomorphogenesis	8.10E-04
26	GO:0010438: cellular response to sulfur starvation	1.02E-03
27	GO:0007275: multicellular organism development	1.16E-03
28	GO:0009959: negative gravitropism	1.25E-03
29	GO:0010029: regulation of seed germination	1.32E-03
30	GO:0006694: steroid biosynthetic process	1.49E-03
31	GO:0031930: mitochondria-nucleus signaling pathway	1.49E-03
32	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	1.75E-03
33	GO:0010161: red light signaling pathway	1.75E-03
34	GO:0006955: immune response	1.75E-03
35	GO:0030497: fatty acid elongation	1.75E-03
36	GO:0006865: amino acid transport	1.95E-03
37	GO:0006402: mRNA catabolic process	2.03E-03
38	GO:0010439: regulation of glucosinolate biosynthetic process	2.03E-03
39	GO:2000070: regulation of response to water deprivation	2.03E-03
40	GO:0009819: drought recovery	2.03E-03
41	GO:0010100: negative regulation of photomorphogenesis	2.32E-03
42	GO:0010099: regulation of photomorphogenesis	2.32E-03
43	GO:0006783: heme biosynthetic process	2.62E-03
44	GO:1900865: chloroplast RNA modification	2.93E-03
45	GO:0009299: mRNA transcription	3.25E-03
46	GO:0048829: root cap development	3.25E-03
47	GO:0045892: negative regulation of transcription, DNA-templated	3.58E-03
48	GO:0009682: induced systemic resistance	3.59E-03
49	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.93E-03
50	GO:0005983: starch catabolic process	3.93E-03
51	GO:0006006: glucose metabolic process	4.30E-03
52	GO:2000028: regulation of photoperiodism, flowering	4.30E-03
53	GO:0009725: response to hormone	4.30E-03
54	GO:2000012: regulation of auxin polar transport	4.30E-03
55	GO:0010102: lateral root morphogenesis	4.30E-03
56	GO:0010223: secondary shoot formation	4.66E-03
57	GO:0009753: response to jasmonic acid	5.00E-03
58	GO:0070588: calcium ion transmembrane transport	5.04E-03
59	GO:0019762: glucosinolate catabolic process	5.44E-03
60	GO:0005992: trehalose biosynthetic process	5.84E-03
61	GO:0010187: negative regulation of seed germination	5.84E-03
62	GO:0016114: terpenoid biosynthetic process	6.67E-03
63	GO:0003333: amino acid transmembrane transport	6.67E-03
64	GO:0016998: cell wall macromolecule catabolic process	6.67E-03
65	GO:0010082: regulation of root meristem growth	7.55E-03
66	GO:0001944: vasculature development	7.55E-03
67	GO:0009625: response to insect	7.55E-03
68	GO:0009693: ethylene biosynthetic process	7.55E-03
69	GO:0009686: gibberellin biosynthetic process	7.55E-03
70	GO:0010150: leaf senescence	8.60E-03
71	GO:0080022: primary root development	8.93E-03
72	GO:0010087: phloem or xylem histogenesis	8.93E-03
73	GO:0010182: sugar mediated signaling pathway	9.41E-03
74	GO:0010305: leaf vascular tissue pattern formation	9.41E-03
75	GO:0009416: response to light stimulus	9.47E-03
76	GO:0009739: response to gibberellin	9.62E-03
77	GO:0009646: response to absence of light	9.91E-03
78	GO:0071554: cell wall organization or biogenesis	1.09E-02
79	GO:1901657: glycosyl compound metabolic process	1.20E-02
80	GO:0006464: cellular protein modification process	1.25E-02
81	GO:0010252: auxin homeostasis	1.25E-02
82	GO:0048573: photoperiodism, flowering	1.59E-02
83	GO:0015995: chlorophyll biosynthetic process	1.59E-02
84	GO:0006811: ion transport	1.83E-02
85	GO:0048527: lateral root development	1.89E-02
86	GO:0009867: jasmonic acid mediated signaling pathway	2.02E-02
87	GO:0006631: fatty acid metabolic process	2.29E-02
88	GO:0009751: response to salicylic acid	2.41E-02
89	GO:0009644: response to high light intensity	2.56E-02
90	GO:0008643: carbohydrate transport	2.56E-02
91	GO:0006812: cation transport	2.85E-02
92	GO:0048367: shoot system development	3.45E-02
93	GO:0009624: response to nematode	3.85E-02
94	GO:0009742: brassinosteroid mediated signaling pathway	4.01E-02
95	GO:0035556: intracellular signal transduction	4.56E-02
96	GO:0055114: oxidation-reduction process	4.69E-02
97	GO:0042744: hydrogen peroxide catabolic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
2	GO:0004134: 4-alpha-glucanotransferase activity	1.10E-04
3	GO:0050139: nicotinate-N-glucosyltransferase activity	1.10E-04
4	GO:0005227: calcium activated cation channel activity	1.10E-04
5	GO:0042834: peptidoglycan binding	1.10E-04
6	GO:0010313: phytochrome binding	1.10E-04
7	GO:0017118: lipoyltransferase activity	2.57E-04
8	GO:0043425: bHLH transcription factor binding	2.57E-04
9	GO:0008493: tetracycline transporter activity	2.57E-04
10	GO:0015193: L-proline transmembrane transporter activity	4.25E-04
11	GO:0004709: MAP kinase kinase kinase activity	1.25E-03
12	GO:0000293: ferric-chelate reductase activity	1.25E-03
13	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.62E-03
14	GO:0004805: trehalose-phosphatase activity	3.25E-03
15	GO:0030234: enzyme regulator activity	3.25E-03
16	GO:0004871: signal transducer activity	3.72E-03
17	GO:0015171: amino acid transmembrane transporter activity	3.88E-03
18	GO:0000976: transcription regulatory region sequence-specific DNA binding	3.93E-03
19	GO:0003725: double-stranded RNA binding	4.30E-03
20	GO:0005262: calcium channel activity	4.30E-03
21	GO:0008146: sulfotransferase activity	5.04E-03
22	GO:0031418: L-ascorbic acid binding	5.84E-03
23	GO:0005345: purine nucleobase transmembrane transporter activity	6.25E-03
24	GO:0033612: receptor serine/threonine kinase binding	6.67E-03
25	GO:0003964: RNA-directed DNA polymerase activity	6.67E-03
26	GO:0010333: terpene synthase activity	6.67E-03
27	GO:0003727: single-stranded RNA binding	8.00E-03
28	GO:0008514: organic anion transmembrane transporter activity	8.00E-03
29	GO:0005199: structural constituent of cell wall	9.41E-03
30	GO:0016413: O-acetyltransferase activity	1.36E-02
31	GO:0102483: scopolin beta-glucosidase activity	1.59E-02
32	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.89E-02
33	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.02E-02
34	GO:0008422: beta-glucosidase activity	2.15E-02
35	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.15E-02
36	GO:0015293: symporter activity	2.63E-02
37	GO:0003777: microtubule motor activity	3.22E-02
38	GO:0031625: ubiquitin protein ligase binding	3.22E-02
39	GO:0046983: protein dimerization activity	3.32E-02
40	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.61E-02
41	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.61E-02
42	GO:0016874: ligase activity	3.69E-02
43	GO:0020037: heme binding	4.07E-02
44	GO:0003723: RNA binding	4.58E-02
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0019897: extrinsic component of plasma membrane	4.25E-04
2	GO:0009501: amyloplast	2.03E-03
3	GO:0010494: cytoplasmic stress granule	2.62E-03
4	GO:0030095: chloroplast photosystem II	4.66E-03
5	GO:0009654: photosystem II oxygen evolving complex	6.25E-03
6	GO:0019898: extrinsic component of membrane	1.04E-02
7	GO:0030529: intracellular ribonucleoprotein complex	1.42E-02
8	GO:0000932: P-body	1.42E-02
9	GO:0000151: ubiquitin ligase complex	1.71E-02
10	GO:0031977: thylakoid lumen	2.29E-02
11	GO:0009543: chloroplast thylakoid lumen	4.51E-02