Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G13610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080149: sucrose induced translational repression0.00E+00
2GO:0046680: response to DDT0.00E+00
3GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
4GO:0010398: xylogalacturonan metabolic process0.00E+00
5GO:0072722: response to amitrole0.00E+00
6GO:0006903: vesicle targeting0.00E+00
7GO:0006216: cytidine catabolic process0.00E+00
8GO:0002084: protein depalmitoylation0.00E+00
9GO:0046686: response to cadmium ion1.84E-06
10GO:0015031: protein transport2.32E-05
11GO:0006511: ubiquitin-dependent protein catabolic process2.60E-04
12GO:0016192: vesicle-mediated transport2.80E-04
13GO:0071669: plant-type cell wall organization or biogenesis2.83E-04
14GO:0006680: glucosylceramide catabolic process3.34E-04
15GO:1900384: regulation of flavonol biosynthetic process3.34E-04
16GO:0042964: thioredoxin reduction3.34E-04
17GO:0035266: meristem growth3.34E-04
18GO:0007292: female gamete generation3.34E-04
19GO:0042350: GDP-L-fucose biosynthetic process3.34E-04
20GO:0000032: cell wall mannoprotein biosynthetic process3.34E-04
21GO:0006886: intracellular protein transport3.94E-04
22GO:0030163: protein catabolic process5.65E-04
23GO:0009651: response to salt stress7.23E-04
24GO:0080026: response to indolebutyric acid7.29E-04
25GO:0015709: thiosulfate transport7.29E-04
26GO:0071422: succinate transmembrane transport7.29E-04
27GO:0042853: L-alanine catabolic process7.29E-04
28GO:0002215: defense response to nematode7.29E-04
29GO:0051788: response to misfolded protein7.29E-04
30GO:0046856: phosphatidylinositol dephosphorylation8.32E-04
31GO:0006888: ER to Golgi vesicle-mediated transport9.38E-04
32GO:0055046: microgametogenesis1.07E-03
33GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.18E-03
34GO:0006556: S-adenosylmethionine biosynthetic process1.18E-03
35GO:0010253: UDP-rhamnose biosynthetic process1.18E-03
36GO:0072661: protein targeting to plasma membrane1.18E-03
37GO:0006517: protein deglycosylation1.18E-03
38GO:0010272: response to silver ion1.18E-03
39GO:0033591: response to L-ascorbic acid1.18E-03
40GO:0060968: regulation of gene silencing1.18E-03
41GO:0009062: fatty acid catabolic process1.18E-03
42GO:0006499: N-terminal protein myristoylation1.20E-03
43GO:0090351: seedling development1.35E-03
44GO:0034976: response to endoplasmic reticulum stress1.50E-03
45GO:0045454: cell redox homeostasis1.59E-03
46GO:0002679: respiratory burst involved in defense response1.70E-03
47GO:0080024: indolebutyric acid metabolic process1.70E-03
48GO:0009298: GDP-mannose biosynthetic process1.70E-03
49GO:0015729: oxaloacetate transport1.70E-03
50GO:0009226: nucleotide-sugar biosynthetic process1.70E-03
51GO:0006612: protein targeting to membrane1.70E-03
52GO:0006893: Golgi to plasma membrane transport1.70E-03
53GO:0030433: ubiquitin-dependent ERAD pathway2.21E-03
54GO:1902584: positive regulation of response to water deprivation2.28E-03
55GO:0010363: regulation of plant-type hypersensitive response2.28E-03
56GO:0033356: UDP-L-arabinose metabolic process2.28E-03
57GO:0071423: malate transmembrane transport2.91E-03
58GO:0009823: cytokinin catabolic process2.91E-03
59GO:0005513: detection of calcium ion2.91E-03
60GO:0097428: protein maturation by iron-sulfur cluster transfer2.91E-03
61GO:0032957: inositol trisphosphate metabolic process2.91E-03
62GO:0045927: positive regulation of growth2.91E-03
63GO:0051603: proteolysis involved in cellular protein catabolic process3.02E-03
64GO:0006662: glycerol ether metabolic process3.30E-03
65GO:0035435: phosphate ion transmembrane transport3.60E-03
66GO:0046855: inositol phosphate dephosphorylation3.60E-03
67GO:0009972: cytidine deamination3.60E-03
68GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly3.60E-03
69GO:0048827: phyllome development3.60E-03
70GO:0048232: male gamete generation3.60E-03
71GO:0006555: methionine metabolic process3.60E-03
72GO:0043248: proteasome assembly3.60E-03
73GO:0042176: regulation of protein catabolic process3.60E-03
74GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.60E-03
75GO:0010315: auxin efflux3.60E-03
76GO:0034389: lipid particle organization4.33E-03
77GO:0017148: negative regulation of translation4.33E-03
78GO:0009099: valine biosynthetic process4.33E-03
79GO:0009554: megasporogenesis4.33E-03
80GO:0080113: regulation of seed growth4.33E-03
81GO:0019509: L-methionine salvage from methylthioadenosine4.33E-03
82GO:0009612: response to mechanical stimulus4.33E-03
83GO:0009082: branched-chain amino acid biosynthetic process4.33E-03
84GO:0008272: sulfate transport5.11E-03
85GO:0006744: ubiquinone biosynthetic process5.11E-03
86GO:0080186: developmental vegetative growth5.11E-03
87GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.11E-03
88GO:0006605: protein targeting5.94E-03
89GO:0010078: maintenance of root meristem identity5.94E-03
90GO:0006491: N-glycan processing5.94E-03
91GO:0050821: protein stabilization5.94E-03
92GO:0006102: isocitrate metabolic process5.94E-03
93GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline5.94E-03
94GO:0009097: isoleucine biosynthetic process6.81E-03
95GO:0006972: hyperosmotic response6.81E-03
96GO:0006002: fructose 6-phosphate metabolic process6.81E-03
97GO:0015996: chlorophyll catabolic process6.81E-03
98GO:0060321: acceptance of pollen6.81E-03
99GO:0019430: removal of superoxide radicals6.81E-03
100GO:0009817: defense response to fungus, incompatible interaction7.70E-03
101GO:0046685: response to arsenic-containing substance7.73E-03
102GO:0010205: photoinhibition8.68E-03
103GO:0009098: leucine biosynthetic process8.68E-03
104GO:0048354: mucilage biosynthetic process involved in seed coat development8.68E-03
105GO:0010043: response to zinc ion8.91E-03
106GO:0000103: sulfate assimilation9.69E-03
107GO:0006032: chitin catabolic process9.69E-03
108GO:0009688: abscisic acid biosynthetic process9.69E-03
109GO:0048829: root cap development9.69E-03
110GO:0051555: flavonol biosynthetic process9.69E-03
111GO:0045087: innate immune response9.77E-03
112GO:0034599: cellular response to oxidative stress1.02E-02
113GO:0006099: tricarboxylic acid cycle1.02E-02
114GO:0000272: polysaccharide catabolic process1.07E-02
115GO:0010015: root morphogenesis1.07E-02
116GO:0072593: reactive oxygen species metabolic process1.07E-02
117GO:0043085: positive regulation of catalytic activity1.07E-02
118GO:0006887: exocytosis1.16E-02
119GO:0016925: protein sumoylation1.18E-02
120GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.18E-02
121GO:0006790: sulfur compound metabolic process1.18E-02
122GO:0009744: response to sucrose1.26E-02
123GO:0051707: response to other organism1.26E-02
124GO:0010102: lateral root morphogenesis1.29E-02
125GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.29E-02
126GO:0000209: protein polyubiquitination1.31E-02
127GO:0009933: meristem structural organization1.41E-02
128GO:0009636: response to toxic substance1.42E-02
129GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.53E-02
130GO:0046854: phosphatidylinositol phosphorylation1.53E-02
131GO:0010053: root epidermal cell differentiation1.53E-02
132GO:0009225: nucleotide-sugar metabolic process1.53E-02
133GO:0007031: peroxisome organization1.53E-02
134GO:0007030: Golgi organization1.53E-02
135GO:0019853: L-ascorbic acid biosynthetic process1.53E-02
136GO:0009846: pollen germination1.59E-02
137GO:0000162: tryptophan biosynthetic process1.65E-02
138GO:0009860: pollen tube growth1.74E-02
139GO:0055114: oxidation-reduction process1.81E-02
140GO:0008299: isoprenoid biosynthetic process1.90E-02
141GO:0006096: glycolytic process2.02E-02
142GO:0016998: cell wall macromolecule catabolic process2.03E-02
143GO:0015992: proton transport2.03E-02
144GO:0019915: lipid storage2.03E-02
145GO:0009626: plant-type hypersensitive response2.15E-02
146GO:0006730: one-carbon metabolic process2.17E-02
147GO:0009814: defense response, incompatible interaction2.17E-02
148GO:0010227: floral organ abscission2.31E-02
149GO:0009693: ethylene biosynthetic process2.31E-02
150GO:0042127: regulation of cell proliferation2.45E-02
151GO:0009561: megagametogenesis2.45E-02
152GO:0009306: protein secretion2.45E-02
153GO:0042147: retrograde transport, endosome to Golgi2.60E-02
154GO:0045489: pectin biosynthetic process2.89E-02
155GO:0009646: response to absence of light3.05E-02
156GO:0009851: auxin biosynthetic process3.20E-02
157GO:0006623: protein targeting to vacuole3.20E-02
158GO:0009751: response to salicylic acid3.33E-02
159GO:0006635: fatty acid beta-oxidation3.36E-02
160GO:0016032: viral process3.52E-02
161GO:0071281: cellular response to iron ion3.69E-02
162GO:0006914: autophagy3.85E-02
163GO:0019760: glucosinolate metabolic process3.85E-02
164GO:0006464: cellular protein modification process3.85E-02
165GO:0006904: vesicle docking involved in exocytosis4.02E-02
166GO:0006810: transport4.05E-02
167GO:0009615: response to virus4.37E-02
168GO:0001666: response to hypoxia4.37E-02
169GO:0009816: defense response to bacterium, incompatible interaction4.54E-02
170GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.68E-02
171GO:0006906: vesicle fusion4.72E-02
172GO:0009627: systemic acquired resistance4.72E-02
RankGO TermAdjusted P value
1GO:0016504: peptidase activator activity0.00E+00
2GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
3GO:0070577: lysine-acetylated histone binding0.00E+00
4GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group0.00E+00
5GO:0047844: deoxycytidine deaminase activity0.00E+00
6GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity1.60E-04
7GO:0004298: threonine-type endopeptidase activity1.83E-04
8GO:0008320: protein transmembrane transporter activity2.83E-04
9GO:0030942: endoplasmic reticulum signal peptide binding3.34E-04
10GO:0102293: pheophytinase b activity3.34E-04
11GO:0019786: Atg8-specific protease activity3.34E-04
12GO:0016229: steroid dehydrogenase activity3.34E-04
13GO:0050577: GDP-L-fucose synthase activity3.34E-04
14GO:0004425: indole-3-glycerol-phosphate synthase activity3.34E-04
15GO:0070401: NADP+ binding3.34E-04
16GO:0043813: phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity3.34E-04
17GO:0046030: inositol trisphosphate phosphatase activity3.34E-04
18GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity3.34E-04
19GO:0048037: cofactor binding3.34E-04
20GO:0004476: mannose-6-phosphate isomerase activity3.34E-04
21GO:0004348: glucosylceramidase activity3.34E-04
22GO:0004791: thioredoxin-disulfide reductase activity3.99E-04
23GO:0019779: Atg8 activating enzyme activity7.29E-04
24GO:0050377: UDP-glucose 4,6-dehydratase activity7.29E-04
25GO:1901677: phosphate transmembrane transporter activity7.29E-04
26GO:0015117: thiosulfate transmembrane transporter activity7.29E-04
27GO:0004776: succinate-CoA ligase (GDP-forming) activity7.29E-04
28GO:0047746: chlorophyllase activity7.29E-04
29GO:0052739: phosphatidylserine 1-acylhydrolase activity7.29E-04
30GO:0010297: heteropolysaccharide binding7.29E-04
31GO:0008460: dTDP-glucose 4,6-dehydratase activity7.29E-04
32GO:0051879: Hsp90 protein binding7.29E-04
33GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity7.29E-04
34GO:0010280: UDP-L-rhamnose synthase activity7.29E-04
35GO:0050347: trans-octaprenyltranstransferase activity7.29E-04
36GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity7.29E-04
37GO:0008805: carbon-monoxide oxygenase activity7.29E-04
38GO:1990585: hydroxyproline O-arabinosyltransferase activity7.29E-04
39GO:0004775: succinate-CoA ligase (ADP-forming) activity7.29E-04
40GO:0052691: UDP-arabinopyranose mutase activity7.29E-04
41GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity9.49E-04
42GO:0015141: succinate transmembrane transporter activity1.18E-03
43GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity1.18E-03
44GO:0004478: methionine adenosyltransferase activity1.18E-03
45GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.18E-03
46GO:0005310: dicarboxylic acid transmembrane transporter activity1.18E-03
47GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.18E-03
48GO:0003746: translation elongation factor activity1.43E-03
49GO:0004449: isocitrate dehydrogenase (NAD+) activity1.70E-03
50GO:0016656: monodehydroascorbate reductase (NADH) activity1.70E-03
51GO:0052656: L-isoleucine transaminase activity1.70E-03
52GO:0004165: dodecenoyl-CoA delta-isomerase activity1.70E-03
53GO:0052654: L-leucine transaminase activity1.70E-03
54GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity1.70E-03
55GO:0017077: oxidative phosphorylation uncoupler activity1.70E-03
56GO:0052655: L-valine transaminase activity1.70E-03
57GO:0015131: oxaloacetate transmembrane transporter activity1.70E-03
58GO:0004445: inositol-polyphosphate 5-phosphatase activity1.70E-03
59GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.70E-03
60GO:0019776: Atg8 ligase activity2.28E-03
61GO:0016866: intramolecular transferase activity2.28E-03
62GO:0004659: prenyltransferase activity2.28E-03
63GO:0070628: proteasome binding2.28E-03
64GO:0004084: branched-chain-amino-acid transaminase activity2.28E-03
65GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.28E-03
66GO:0004031: aldehyde oxidase activity2.28E-03
67GO:0050302: indole-3-acetaldehyde oxidase activity2.28E-03
68GO:0003756: protein disulfide isomerase activity2.62E-03
69GO:0047134: protein-disulfide reductase activity2.84E-03
70GO:0031386: protein tag2.91E-03
71GO:0008374: O-acyltransferase activity2.91E-03
72GO:0019139: cytokinin dehydrogenase activity2.91E-03
73GO:0016853: isomerase activity3.55E-03
74GO:0035252: UDP-xylosyltransferase activity3.60E-03
75GO:0036402: proteasome-activating ATPase activity3.60E-03
76GO:0008474: palmitoyl-(protein) hydrolase activity3.60E-03
77GO:0031593: polyubiquitin binding3.60E-03
78GO:0004656: procollagen-proline 4-dioxygenase activity4.33E-03
79GO:0004126: cytidine deaminase activity4.33E-03
80GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.33E-03
81GO:0003950: NAD+ ADP-ribosyltransferase activity4.33E-03
82GO:0050660: flavin adenine dinucleotide binding4.52E-03
83GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.64E-03
84GO:0016887: ATPase activity4.98E-03
85GO:0003872: 6-phosphofructokinase activity5.11E-03
86GO:0015140: malate transmembrane transporter activity5.11E-03
87GO:0004033: aldo-keto reductase (NADP) activity5.94E-03
88GO:0004714: transmembrane receptor protein tyrosine kinase activity5.94E-03
89GO:0008312: 7S RNA binding5.94E-03
90GO:0008970: phosphatidylcholine 1-acylhydrolase activity6.81E-03
91GO:0016798: hydrolase activity, acting on glycosyl bonds6.94E-03
92GO:0003824: catalytic activity8.55E-03
93GO:0030955: potassium ion binding8.68E-03
94GO:0004743: pyruvate kinase activity8.68E-03
95GO:0045309: protein phosphorylated amino acid binding8.68E-03
96GO:0016614: oxidoreductase activity, acting on CH-OH group of donors8.91E-03
97GO:0030234: enzyme regulator activity9.69E-03
98GO:0004568: chitinase activity9.69E-03
99GO:0008047: enzyme activator activity9.69E-03
100GO:0004161: dimethylallyltranstransferase activity1.07E-02
101GO:0019904: protein domain specific binding1.07E-02
102GO:0015116: sulfate transmembrane transporter activity1.18E-02
103GO:0031072: heat shock protein binding1.29E-02
104GO:0008131: primary amine oxidase activity1.41E-02
105GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.41E-02
106GO:0031624: ubiquitin conjugating enzyme binding1.41E-02
107GO:0005198: structural molecule activity1.42E-02
108GO:0004190: aspartic-type endopeptidase activity1.53E-02
109GO:0004867: serine-type endopeptidase inhibitor activity1.53E-02
110GO:0017025: TBP-class protein binding1.53E-02
111GO:0008061: chitin binding1.53E-02
112GO:0051536: iron-sulfur cluster binding1.77E-02
113GO:0031418: L-ascorbic acid binding1.77E-02
114GO:0043130: ubiquitin binding1.77E-02
115GO:0031625: ubiquitin protein ligase binding1.89E-02
116GO:0008408: 3'-5' exonuclease activity2.03E-02
117GO:0008233: peptidase activity2.04E-02
118GO:0061630: ubiquitin protein ligase activity2.22E-02
119GO:0016760: cellulose synthase (UDP-forming) activity2.31E-02
120GO:0015035: protein disulfide oxidoreductase activity2.51E-02
121GO:0004527: exonuclease activity2.89E-02
122GO:0050662: coenzyme binding3.05E-02
123GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.13E-02
124GO:0016491: oxidoreductase activity3.38E-02
125GO:0004518: nuclease activity3.52E-02
126GO:0008565: protein transporter activity3.64E-02
127GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.02E-02
128GO:0008237: metallopeptidase activity4.02E-02
129GO:0008375: acetylglucosaminyltransferase activity4.72E-02
RankGO TermAdjusted P value
1GO:0000502: proteasome complex3.63E-10
2GO:0005794: Golgi apparatus5.72E-08
3GO:0005839: proteasome core complex8.61E-06
4GO:0005829: cytosol5.67E-05
5GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane2.83E-04
6GO:0000138: Golgi trans cisterna3.34E-04
7GO:0005886: plasma membrane4.90E-04
8GO:0031901: early endosome membrane5.24E-04
9GO:0032580: Golgi cisterna membrane6.11E-04
10GO:0008540: proteasome regulatory particle, base subcomplex6.19E-04
11GO:0005788: endoplasmic reticulum lumen8.20E-04
12GO:0008541: proteasome regulatory particle, lid subcomplex8.32E-04
13GO:0005783: endoplasmic reticulum1.11E-03
14GO:0030132: clathrin coat of coated pit1.18E-03
15GO:0030130: clathrin coat of trans-Golgi network vesicle1.18E-03
16GO:0005775: vacuolar lumen1.70E-03
17GO:0005774: vacuolar membrane2.08E-03
18GO:0005776: autophagosome2.28E-03
19GO:0005945: 6-phosphofructokinase complex2.91E-03
20GO:0030127: COPII vesicle coat3.60E-03
21GO:0030904: retromer complex3.60E-03
22GO:0031597: cytosolic proteasome complex4.33E-03
23GO:0030173: integral component of Golgi membrane4.33E-03
24GO:0016592: mediator complex4.35E-03
25GO:0005737: cytoplasm4.64E-03
26GO:0031595: nuclear proteasome complex5.11E-03
27GO:0005789: endoplasmic reticulum membrane5.74E-03
28GO:0005768: endosome5.80E-03
29GO:0031982: vesicle5.94E-03
30GO:0000421: autophagosome membrane5.94E-03
31GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.81E-03
32GO:0005811: lipid particle6.81E-03
33GO:0019773: proteasome core complex, alpha-subunit complex6.81E-03
34GO:0031090: organelle membrane7.73E-03
35GO:0030665: clathrin-coated vesicle membrane8.68E-03
36GO:0017119: Golgi transport complex9.69E-03
37GO:0031902: late endosome membrane1.16E-02
38GO:0005802: trans-Golgi network1.43E-02
39GO:0005795: Golgi stack1.53E-02
40GO:0009506: plasmodesma1.78E-02
41GO:0031410: cytoplasmic vesicle2.17E-02
42GO:0005744: mitochondrial inner membrane presequence translocase complex2.45E-02
43GO:0016021: integral component of membrane2.85E-02
44GO:0009536: plastid3.01E-02
45GO:0009504: cell plate3.20E-02
46GO:0005773: vacuole3.47E-02
47GO:0000145: exocyst3.52E-02
48GO:0005778: peroxisomal membrane4.02E-02
49GO:0005615: extracellular space4.68E-02
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Gene type



Gene DE type