Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G13090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015690: aluminum cation transport0.00E+00
2GO:1900367: positive regulation of defense response to insect0.00E+00
3GO:0009312: oligosaccharide biosynthetic process0.00E+00
4GO:0002764: immune response-regulating signaling pathway0.00E+00
5GO:0032515: negative regulation of phosphoprotein phosphatase activity0.00E+00
6GO:0046865: terpenoid transport0.00E+00
7GO:0033587: shikimate biosynthetic process0.00E+00
8GO:0010324: membrane invagination0.00E+00
9GO:0071327: cellular response to trehalose stimulus0.00E+00
10GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
11GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
12GO:0009751: response to salicylic acid2.97E-08
13GO:0010150: leaf senescence3.63E-06
14GO:0010200: response to chitin5.36E-06
15GO:0009611: response to wounding3.36E-05
16GO:0031348: negative regulation of defense response3.50E-05
17GO:0009737: response to abscisic acid4.15E-05
18GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.96E-05
19GO:0033358: UDP-L-arabinose biosynthetic process1.37E-04
20GO:0060548: negative regulation of cell death1.37E-04
21GO:0045227: capsule polysaccharide biosynthetic process1.37E-04
22GO:0006855: drug transmembrane transport1.50E-04
23GO:0009643: photosynthetic acclimation2.98E-04
24GO:0006952: defense response3.23E-04
25GO:0071456: cellular response to hypoxia4.59E-04
26GO:1901183: positive regulation of camalexin biosynthetic process4.98E-04
27GO:0032491: detection of molecule of fungal origin4.98E-04
28GO:0009968: negative regulation of signal transduction4.98E-04
29GO:1990542: mitochondrial transmembrane transport4.98E-04
30GO:0048508: embryonic meristem development4.98E-04
31GO:0051938: L-glutamate import4.98E-04
32GO:0015760: glucose-6-phosphate transport4.98E-04
33GO:0046256: 2,4,6-trinitrotoluene catabolic process4.98E-04
34GO:0043547: positive regulation of GTPase activity4.98E-04
35GO:0019567: arabinose biosynthetic process4.98E-04
36GO:0015969: guanosine tetraphosphate metabolic process4.98E-04
37GO:1900056: negative regulation of leaf senescence5.11E-04
38GO:0009625: response to insect5.15E-04
39GO:0009753: response to jasmonic acid6.01E-04
40GO:0051707: response to other organism7.45E-04
41GO:0010204: defense response signaling pathway, resistance gene-independent7.77E-04
42GO:2000031: regulation of salicylic acid mediated signaling pathway7.77E-04
43GO:0009749: response to glucose9.24E-04
44GO:0010112: regulation of systemic acquired resistance9.28E-04
45GO:0010193: response to ozone1.01E-03
46GO:0010115: regulation of abscisic acid biosynthetic process1.07E-03
47GO:0002240: response to molecule of oomycetes origin1.07E-03
48GO:0015865: purine nucleotide transport1.07E-03
49GO:0044419: interspecies interaction between organisms1.07E-03
50GO:0009945: radial axis specification1.07E-03
51GO:0010271: regulation of chlorophyll catabolic process1.07E-03
52GO:0015712: hexose phosphate transport1.07E-03
53GO:0019725: cellular homeostasis1.07E-03
54GO:0051258: protein polymerization1.07E-03
55GO:0043091: L-arginine import1.07E-03
56GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.07E-03
57GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.07E-03
58GO:0015802: basic amino acid transport1.07E-03
59GO:0010618: aerenchyma formation1.07E-03
60GO:0080181: lateral root branching1.07E-03
61GO:1900426: positive regulation of defense response to bacterium1.09E-03
62GO:0009620: response to fungus1.74E-03
63GO:0015714: phosphoenolpyruvate transport1.75E-03
64GO:0080168: abscisic acid transport1.75E-03
65GO:1900055: regulation of leaf senescence1.75E-03
66GO:0010498: proteasomal protein catabolic process1.75E-03
67GO:0006954: inflammatory response1.75E-03
68GO:0034051: negative regulation of plant-type hypersensitive response1.75E-03
69GO:0016045: detection of bacterium1.75E-03
70GO:1900140: regulation of seedling development1.75E-03
71GO:0010359: regulation of anion channel activity1.75E-03
72GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.75E-03
73GO:0035436: triose phosphate transmembrane transport1.75E-03
74GO:0045836: positive regulation of meiotic nuclear division1.75E-03
75GO:0015692: lead ion transport1.75E-03
76GO:0015695: organic cation transport1.75E-03
77GO:0006950: response to stress1.98E-03
78GO:0009624: response to nematode2.01E-03
79GO:0002237: response to molecule of bacterial origin2.16E-03
80GO:0010167: response to nitrate2.42E-03
81GO:0009225: nucleotide-sugar metabolic process2.42E-03
82GO:0006468: protein phosphorylation2.51E-03
83GO:0046902: regulation of mitochondrial membrane permeability2.54E-03
84GO:0072583: clathrin-dependent endocytosis2.54E-03
85GO:0010731: protein glutathionylation2.54E-03
86GO:0015696: ammonium transport2.54E-03
87GO:0051289: protein homotetramerization2.54E-03
88GO:0046836: glycolipid transport2.54E-03
89GO:0048194: Golgi vesicle budding2.54E-03
90GO:0007165: signal transduction2.73E-03
91GO:0009414: response to water deprivation2.85E-03
92GO:2000377: regulation of reactive oxygen species metabolic process3.00E-03
93GO:0042742: defense response to bacterium3.01E-03
94GO:0009867: jasmonic acid mediated signaling pathway3.05E-03
95GO:0006979: response to oxidative stress3.07E-03
96GO:0010508: positive regulation of autophagy3.42E-03
97GO:0015713: phosphoglycerate transport3.42E-03
98GO:0080142: regulation of salicylic acid biosynthetic process3.42E-03
99GO:1901141: regulation of lignin biosynthetic process3.42E-03
100GO:0010109: regulation of photosynthesis3.42E-03
101GO:0072488: ammonium transmembrane transport3.42E-03
102GO:0006012: galactose metabolic process4.36E-03
103GO:0045927: positive regulation of growth4.38E-03
104GO:0009697: salicylic acid biosynthetic process4.38E-03
105GO:0034052: positive regulation of plant-type hypersensitive response4.38E-03
106GO:0030041: actin filament polymerization4.38E-03
107GO:0018344: protein geranylgeranylation4.38E-03
108GO:0010225: response to UV-C4.38E-03
109GO:0009636: response to toxic substance4.91E-03
110GO:0010337: regulation of salicylic acid metabolic process5.43E-03
111GO:0018258: protein O-linked glycosylation via hydroxyproline5.43E-03
112GO:0002238: response to molecule of fungal origin5.43E-03
113GO:0009759: indole glucosinolate biosynthetic process5.43E-03
114GO:0010942: positive regulation of cell death5.43E-03
115GO:0010405: arabinogalactan protein metabolic process5.43E-03
116GO:0048317: seed morphogenesis5.43E-03
117GO:0042391: regulation of membrane potential5.56E-03
118GO:0006470: protein dephosphorylation5.69E-03
119GO:0009646: response to absence of light6.45E-03
120GO:0042372: phylloquinone biosynthetic process6.56E-03
121GO:0045926: negative regulation of growth6.56E-03
122GO:0009942: longitudinal axis specification6.56E-03
123GO:0009423: chorismate biosynthetic process6.56E-03
124GO:0010310: regulation of hydrogen peroxide metabolic process6.56E-03
125GO:0080036: regulation of cytokinin-activated signaling pathway6.56E-03
126GO:0071470: cellular response to osmotic stress6.56E-03
127GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c7.76E-03
128GO:0050829: defense response to Gram-negative bacterium7.76E-03
129GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway7.76E-03
130GO:0071446: cellular response to salicylic acid stimulus7.76E-03
131GO:0007264: small GTPase mediated signal transduction7.92E-03
132GO:0009626: plant-type hypersensitive response8.32E-03
133GO:0010928: regulation of auxin mediated signaling pathway9.03E-03
134GO:0009787: regulation of abscisic acid-activated signaling pathway9.03E-03
135GO:0009819: drought recovery9.03E-03
136GO:0043068: positive regulation of programmed cell death9.03E-03
137GO:0045010: actin nucleation9.03E-03
138GO:0031540: regulation of anthocyanin biosynthetic process9.03E-03
139GO:0010120: camalexin biosynthetic process1.04E-02
140GO:0010208: pollen wall assembly1.04E-02
141GO:0010099: regulation of photomorphogenesis1.04E-02
142GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.14E-02
143GO:0006098: pentose-phosphate shunt1.18E-02
144GO:0090333: regulation of stomatal closure1.18E-02
145GO:0046916: cellular transition metal ion homeostasis1.18E-02
146GO:0080167: response to karrikin1.25E-02
147GO:0048268: clathrin coat assembly1.33E-02
148GO:0048354: mucilage biosynthetic process involved in seed coat development1.33E-02
149GO:0010380: regulation of chlorophyll biosynthetic process1.33E-02
150GO:0008202: steroid metabolic process1.33E-02
151GO:0007064: mitotic sister chromatid cohesion1.48E-02
152GO:0006032: chitin catabolic process1.48E-02
153GO:0006499: N-terminal protein myristoylation1.56E-02
154GO:0009407: toxin catabolic process1.56E-02
155GO:0009790: embryo development1.58E-02
156GO:0010119: regulation of stomatal movement1.63E-02
157GO:0007568: aging1.63E-02
158GO:0019684: photosynthesis, light reaction1.64E-02
159GO:0009682: induced systemic resistance1.64E-02
160GO:0009089: lysine biosynthetic process via diaminopimelate1.64E-02
161GO:0072593: reactive oxygen species metabolic process1.64E-02
162GO:0009073: aromatic amino acid family biosynthetic process1.64E-02
163GO:0009684: indoleacetic acid biosynthetic process1.64E-02
164GO:0015706: nitrate transport1.81E-02
165GO:0002213: defense response to insect1.81E-02
166GO:0010105: negative regulation of ethylene-activated signaling pathway1.81E-02
167GO:0008361: regulation of cell size1.81E-02
168GO:0012501: programmed cell death1.81E-02
169GO:0006810: transport1.90E-02
170GO:2000028: regulation of photoperiodism, flowering1.98E-02
171GO:0055046: microgametogenesis1.98E-02
172GO:0006829: zinc II ion transport1.98E-02
173GO:0006897: endocytosis2.13E-02
174GO:0007034: vacuolar transport2.16E-02
175GO:0010540: basipetal auxin transport2.16E-02
176GO:0009266: response to temperature stimulus2.16E-02
177GO:0034605: cellular response to heat2.16E-02
178GO:0007166: cell surface receptor signaling pathway2.31E-02
179GO:0009744: response to sucrose2.31E-02
180GO:0046688: response to copper ion2.34E-02
181GO:0046854: phosphatidylinositol phosphorylation2.34E-02
182GO:0009617: response to bacterium2.44E-02
183GO:0000162: tryptophan biosynthetic process2.53E-02
184GO:0055085: transmembrane transport2.68E-02
185GO:0009863: salicylic acid mediated signaling pathway2.72E-02
186GO:0080147: root hair cell development2.72E-02
187GO:0031347: regulation of defense response2.80E-02
188GO:0006812: cation transport2.90E-02
189GO:0006874: cellular calcium ion homeostasis2.92E-02
190GO:0006825: copper ion transport2.92E-02
191GO:0009809: lignin biosynthetic process3.12E-02
192GO:0006486: protein glycosylation3.12E-02
193GO:0051321: meiotic cell cycle3.13E-02
194GO:0003333: amino acid transmembrane transport3.13E-02
195GO:0016998: cell wall macromolecule catabolic process3.13E-02
196GO:0009269: response to desiccation3.13E-02
197GO:0009814: defense response, incompatible interaction3.33E-02
198GO:0016226: iron-sulfur cluster assembly3.33E-02
199GO:2000022: regulation of jasmonic acid mediated signaling pathway3.33E-02
200GO:0010017: red or far-red light signaling pathway3.33E-02
201GO:0042127: regulation of cell proliferation3.77E-02
202GO:0009561: megagametogenesis3.77E-02
203GO:0009409: response to cold3.98E-02
204GO:0070417: cellular response to cold3.99E-02
205GO:0009723: response to ethylene4.04E-02
206GO:0000271: polysaccharide biosynthetic process4.21E-02
207GO:0042631: cellular response to water deprivation4.21E-02
208GO:0009960: endosperm development4.44E-02
209GO:0045489: pectin biosynthetic process4.44E-02
210GO:0006885: regulation of pH4.44E-02
211GO:0010182: sugar mediated signaling pathway4.44E-02
212GO:0046777: protein autophosphorylation4.77E-02
RankGO TermAdjusted P value
1GO:0004865: protein serine/threonine phosphatase inhibitor activity0.00E+00
2GO:0004107: chorismate synthase activity0.00E+00
3GO:0005212: structural constituent of eye lens0.00E+00
4GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
5GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
6GO:0016301: kinase activity6.62E-05
7GO:0050373: UDP-arabinose 4-epimerase activity1.37E-04
8GO:0043424: protein histidine kinase binding3.59E-04
9GO:0015238: drug transmembrane transporter activity3.73E-04
10GO:0004012: phospholipid-translocating ATPase activity3.98E-04
11GO:0003978: UDP-glucose 4-epimerase activity3.98E-04
12GO:0019707: protein-cysteine S-acyltransferase activity4.98E-04
13GO:0010285: L,L-diaminopimelate aminotransferase activity4.98E-04
14GO:0032050: clathrin heavy chain binding4.98E-04
15GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.98E-04
16GO:0004662: CAAX-protein geranylgeranyltransferase activity4.98E-04
17GO:0019901: protein kinase binding9.24E-04
18GO:0015297: antiporter activity9.75E-04
19GO:0008728: GTP diphosphokinase activity1.07E-03
20GO:0048531: beta-1,3-galactosyltransferase activity1.07E-03
21GO:0047364: desulfoglucosinolate sulfotransferase activity1.07E-03
22GO:0015152: glucose-6-phosphate transmembrane transporter activity1.07E-03
23GO:0022821: potassium ion antiporter activity1.07E-03
24GO:0004674: protein serine/threonine kinase activity1.15E-03
25GO:0004568: chitinase activity1.27E-03
26GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.38E-03
27GO:0032403: protein complex binding1.75E-03
28GO:0071917: triose-phosphate transmembrane transporter activity1.75E-03
29GO:0004324: ferredoxin-NADP+ reductase activity1.75E-03
30GO:0016531: copper chaperone activity1.75E-03
31GO:0008375: acetylglucosaminyltransferase activity1.85E-03
32GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.92E-03
33GO:0030552: cAMP binding2.42E-03
34GO:0030553: cGMP binding2.42E-03
35GO:0015181: arginine transmembrane transporter activity2.54E-03
36GO:0017077: oxidative phosphorylation uncoupler activity2.54E-03
37GO:0015189: L-lysine transmembrane transporter activity2.54E-03
38GO:0017089: glycolipid transporter activity2.54E-03
39GO:0005216: ion channel activity3.31E-03
40GO:0005313: L-glutamate transmembrane transporter activity3.42E-03
41GO:0019199: transmembrane receptor protein kinase activity3.42E-03
42GO:0004930: G-protein coupled receptor activity3.42E-03
43GO:0015120: phosphoglycerate transmembrane transporter activity3.42E-03
44GO:0004834: tryptophan synthase activity3.42E-03
45GO:0004737: pyruvate decarboxylase activity3.42E-03
46GO:0051861: glycolipid binding3.42E-03
47GO:0033612: receptor serine/threonine kinase binding3.64E-03
48GO:0019706: protein-cysteine S-palmitoyltransferase activity3.64E-03
49GO:0005215: transporter activity3.83E-03
50GO:0005515: protein binding4.25E-03
51GO:0005471: ATP:ADP antiporter activity4.38E-03
52GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.38E-03
53GO:0008519: ammonium transmembrane transporter activity5.43E-03
54GO:0030976: thiamine pyrophosphate binding5.43E-03
55GO:1990714: hydroxyproline O-galactosyltransferase activity5.43E-03
56GO:0030551: cyclic nucleotide binding5.56E-03
57GO:0005249: voltage-gated potassium channel activity5.56E-03
58GO:0003950: NAD+ ADP-ribosyltransferase activity6.56E-03
59GO:0005261: cation channel activity6.56E-03
60GO:0009927: histidine phosphotransfer kinase activity6.56E-03
61GO:0042626: ATPase activity, coupled to transmembrane movement of substances6.68E-03
62GO:0005509: calcium ion binding7.10E-03
63GO:0043295: glutathione binding7.76E-03
64GO:0016831: carboxy-lyase activity7.76E-03
65GO:0004033: aldo-keto reductase (NADP) activity9.03E-03
66GO:0004708: MAP kinase kinase activity9.03E-03
67GO:0004714: transmembrane receptor protein tyrosine kinase activity9.03E-03
68GO:0005524: ATP binding9.47E-03
69GO:0004430: 1-phosphatidylinositol 4-kinase activity1.04E-02
70GO:0008142: oxysterol binding1.04E-02
71GO:0004806: triglyceride lipase activity1.27E-02
72GO:0015174: basic amino acid transmembrane transporter activity1.33E-02
73GO:0047617: acyl-CoA hydrolase activity1.33E-02
74GO:0015112: nitrate transmembrane transporter activity1.33E-02
75GO:0008171: O-methyltransferase activity1.48E-02
76GO:0005545: 1-phosphatidylinositol binding1.48E-02
77GO:0005543: phospholipid binding1.64E-02
78GO:0008559: xenobiotic-transporting ATPase activity1.64E-02
79GO:0008378: galactosyltransferase activity1.81E-02
80GO:0004722: protein serine/threonine phosphatase activity1.89E-02
81GO:0005315: inorganic phosphate transmembrane transporter activity1.98E-02
82GO:0004364: glutathione transferase activity2.22E-02
83GO:0008146: sulfotransferase activity2.34E-02
84GO:0004970: ionotropic glutamate receptor activity2.34E-02
85GO:0005217: intracellular ligand-gated ion channel activity2.34E-02
86GO:0004190: aspartic-type endopeptidase activity2.34E-02
87GO:0003954: NADH dehydrogenase activity2.72E-02
88GO:0008324: cation transmembrane transporter activity2.92E-02
89GO:0004707: MAP kinase activity3.13E-02
90GO:0000287: magnesium ion binding3.30E-02
91GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.33E-02
92GO:0043531: ADP binding3.78E-02
93GO:0005525: GTP binding4.12E-02
94GO:0004842: ubiquitin-protein transferase activity4.13E-02
95GO:0005451: monovalent cation:proton antiporter activity4.21E-02
96GO:0005199: structural constituent of cell wall4.44E-02
97GO:0046873: metal ion transmembrane transporter activity4.44E-02
98GO:0030276: clathrin binding4.44E-02
99GO:0015299: solute:proton antiporter activity4.68E-02
100GO:0010181: FMN binding4.68E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane2.67E-08
2GO:0016021: integral component of membrane6.95E-07
3GO:0005901: caveola1.09E-05
4GO:0000813: ESCRT I complex2.11E-04
5GO:0005758: mitochondrial intermembrane space3.14E-04
6GO:0005953: CAAX-protein geranylgeranyltransferase complex4.98E-04
7GO:0000138: Golgi trans cisterna4.98E-04
8GO:0031304: intrinsic component of mitochondrial inner membrane1.07E-03
9GO:0008287: protein serine/threonine phosphatase complex1.75E-03
10GO:0030139: endocytic vesicle1.75E-03
11GO:0009530: primary cell wall1.75E-03
12GO:0070062: extracellular exosome2.54E-03
13GO:0005794: Golgi apparatus3.70E-03
14GO:0000164: protein phosphatase type 1 complex4.38E-03
15GO:0016363: nuclear matrix6.56E-03
16GO:0032580: Golgi cisterna membrane9.00E-03
17GO:0000421: autophagosome membrane9.03E-03
18GO:0005802: trans-Golgi network1.46E-02
19GO:0030125: clathrin vesicle coat1.48E-02
20GO:0005740: mitochondrial envelope1.48E-02
21GO:0005578: proteinaceous extracellular matrix1.98E-02
22GO:0031012: extracellular matrix1.98E-02
23GO:0005795: Golgi stack2.34E-02
24GO:0005774: vacuolar membrane2.39E-02
25GO:0005769: early endosome2.53E-02
26GO:0070469: respiratory chain2.92E-02
27GO:0005905: clathrin-coated pit3.13E-02
28GO:0031410: cytoplasmic vesicle3.33E-02
29GO:0030136: clathrin-coated vesicle3.99E-02
30GO:0005770: late endosome4.44E-02
31GO:0005768: endosome4.86E-02
<
Gene type



Gene DE type