co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G13000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0042352: GDP-L-fucose salvage	0.00E+00
6	GO:0009733: response to auxin	1.60E-10
7	GO:0009734: auxin-activated signaling pathway	1.67E-09
8	GO:0046620: regulation of organ growth	1.75E-07
9	GO:0040008: regulation of growth	7.58E-06
10	GO:0048829: root cap development	4.62E-05
11	GO:0006438: valyl-tRNA aminoacylation	3.73E-04
12	GO:0046520: sphingoid biosynthetic process	3.73E-04
13	GO:0015904: tetracycline transport	3.73E-04
14	GO:0034757: negative regulation of iron ion transport	3.73E-04
15	GO:0009926: auxin polar transport	3.81E-04
16	GO:0007275: multicellular organism development	6.90E-04
17	GO:1900865: chloroplast RNA modification	7.24E-04
18	GO:0006423: cysteinyl-tRNA aminoacylation	8.10E-04
19	GO:1900871: chloroplast mRNA modification	8.10E-04
20	GO:0010271: regulation of chlorophyll catabolic process	8.10E-04
21	GO:0006432: phenylalanyl-tRNA aminoacylation	8.10E-04
22	GO:0001736: establishment of planar polarity	8.10E-04
23	GO:0080009: mRNA methylation	8.10E-04
24	GO:0009786: regulation of asymmetric cell division	8.10E-04
25	GO:0006420: arginyl-tRNA aminoacylation	8.10E-04
26	GO:0043039: tRNA aminoacylation	8.10E-04
27	GO:0010588: cotyledon vascular tissue pattern formation	1.25E-03
28	GO:0033591: response to L-ascorbic acid	1.31E-03
29	GO:0080117: secondary growth	1.31E-03
30	GO:0016045: detection of bacterium	1.31E-03
31	GO:0071398: cellular response to fatty acid	1.31E-03
32	GO:0030029: actin filament-based process	1.31E-03
33	GO:0090506: axillary shoot meristem initiation	1.31E-03
34	GO:0010311: lateral root formation	1.39E-03
35	GO:0000160: phosphorelay signal transduction system	1.39E-03
36	GO:0006865: amino acid transport	1.66E-03
37	GO:0007276: gamete generation	1.89E-03
38	GO:0006424: glutamyl-tRNA aminoacylation	1.89E-03
39	GO:0010371: regulation of gibberellin biosynthetic process	1.89E-03
40	GO:0051513: regulation of monopolar cell growth	1.89E-03
41	GO:0051639: actin filament network formation	1.89E-03
42	GO:0051017: actin filament bundle assembly	1.95E-03
43	GO:0006418: tRNA aminoacylation for protein translation	2.16E-03
44	GO:0003333: amino acid transmembrane transport	2.37E-03
45	GO:0008295: spermidine biosynthetic process	2.54E-03
46	GO:0006021: inositol biosynthetic process	2.54E-03
47	GO:0009755: hormone-mediated signaling pathway	2.54E-03
48	GO:0051764: actin crosslink formation	2.54E-03
49	GO:0016131: brassinosteroid metabolic process	3.25E-03
50	GO:0048497: maintenance of floral organ identity	3.25E-03
51	GO:0010438: cellular response to sulfur starvation	3.25E-03
52	GO:0009736: cytokinin-activated signaling pathway	3.56E-03
53	GO:0010087: phloem or xylem histogenesis	3.60E-03
54	GO:0016554: cytidine to uridine editing	4.02E-03
55	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	4.02E-03
56	GO:0048831: regulation of shoot system development	4.02E-03
57	GO:0003006: developmental process involved in reproduction	4.02E-03
58	GO:0071554: cell wall organization or biogenesis	4.79E-03
59	GO:0031930: mitochondria-nucleus signaling pathway	4.85E-03
60	GO:0006694: steroid biosynthetic process	4.85E-03
61	GO:0048509: regulation of meristem development	4.85E-03
62	GO:0030497: fatty acid elongation	5.73E-03
63	GO:0010098: suspensor development	5.73E-03
64	GO:0030307: positive regulation of cell growth	5.73E-03
65	GO:0009819: drought recovery	6.65E-03
66	GO:0006402: mRNA catabolic process	6.65E-03
67	GO:0010439: regulation of glucosinolate biosynthetic process	6.65E-03
68	GO:2000070: regulation of response to water deprivation	6.65E-03
69	GO:0010492: maintenance of shoot apical meristem identity	6.65E-03
70	GO:0000105: histidine biosynthetic process	6.65E-03
71	GO:0032544: plastid translation	7.64E-03
72	GO:0009793: embryo development ending in seed dormancy	7.72E-03
73	GO:0048573: photoperiodism, flowering	8.18E-03
74	GO:0048507: meristem development	8.66E-03
75	GO:0000373: Group II intron splicing	8.66E-03
76	GO:0006779: porphyrin-containing compound biosynthetic process	9.74E-03
77	GO:0009098: leucine biosynthetic process	9.74E-03
78	GO:0016571: histone methylation	9.74E-03
79	GO:0016573: histone acetylation	9.74E-03
80	GO:0006782: protoporphyrinogen IX biosynthetic process	1.09E-02
81	GO:0009299: mRNA transcription	1.09E-02
82	GO:0009641: shade avoidance	1.09E-02
83	GO:0031627: telomeric loop formation	1.09E-02
84	GO:0009682: induced systemic resistance	1.20E-02
85	GO:0043085: positive regulation of catalytic activity	1.20E-02
86	GO:0048765: root hair cell differentiation	1.20E-02
87	GO:0012501: programmed cell death	1.33E-02
88	GO:0045037: protein import into chloroplast stroma	1.33E-02
89	GO:0010582: floral meristem determinacy	1.33E-02
90	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.33E-02
91	GO:0006790: sulfur compound metabolic process	1.33E-02
92	GO:0006631: fatty acid metabolic process	1.37E-02
93	GO:2000012: regulation of auxin polar transport	1.45E-02
94	GO:0010102: lateral root morphogenesis	1.45E-02
95	GO:0009691: cytokinin biosynthetic process	1.45E-02
96	GO:2000028: regulation of photoperiodism, flowering	1.45E-02
97	GO:0009725: response to hormone	1.45E-02
98	GO:0048467: gynoecium development	1.58E-02
99	GO:0010020: chloroplast fission	1.58E-02
100	GO:0010223: secondary shoot formation	1.58E-02
101	GO:0009887: animal organ morphogenesis	1.58E-02
102	GO:0009266: response to temperature stimulus	1.58E-02
103	GO:0009636: response to toxic substance	1.68E-02
104	GO:0046854: phosphatidylinositol phosphorylation	1.71E-02
105	GO:0006863: purine nucleobase transport	1.85E-02
106	GO:0009658: chloroplast organization	1.95E-02
107	GO:0006338: chromatin remodeling	1.99E-02
108	GO:0007010: cytoskeleton organization	1.99E-02
109	GO:0005992: trehalose biosynthetic process	1.99E-02
110	GO:0010431: seed maturation	2.29E-02
111	GO:0007005: mitochondrion organization	2.44E-02
112	GO:0009693: ethylene biosynthetic process	2.60E-02
113	GO:0071215: cellular response to abscisic acid stimulus	2.60E-02
114	GO:0010082: regulation of root meristem growth	2.60E-02
115	GO:0001944: vasculature development	2.60E-02
116	GO:0009625: response to insect	2.60E-02
117	GO:0009416: response to light stimulus	2.75E-02
118	GO:0010091: trichome branching	2.76E-02
119	GO:0042127: regulation of cell proliferation	2.76E-02
120	GO:0009624: response to nematode	2.87E-02
121	GO:0070417: cellular response to cold	2.92E-02
122	GO:0009742: brassinosteroid mediated signaling pathway	3.04E-02
123	GO:0080022: primary root development	3.08E-02
124	GO:0008033: tRNA processing	3.08E-02
125	GO:0045454: cell redox homeostasis	3.20E-02
126	GO:0010305: leaf vascular tissue pattern formation	3.25E-02
127	GO:0009958: positive gravitropism	3.25E-02
128	GO:0006662: glycerol ether metabolic process	3.25E-02
129	GO:0010182: sugar mediated signaling pathway	3.25E-02
130	GO:0045892: negative regulation of transcription, DNA-templated	3.27E-02
131	GO:0009646: response to absence of light	3.42E-02
132	GO:0016132: brassinosteroid biosynthetic process	3.78E-02
133	GO:0010583: response to cyclopentenone	3.96E-02
134	GO:0032502: developmental process	3.96E-02
135	GO:0030163: protein catabolic process	4.14E-02
136	GO:1901657: glycosyl compound metabolic process	4.14E-02
137	GO:0019760: glucosinolate metabolic process	4.33E-02
138	GO:0006464: cellular protein modification process	4.33E-02
139	GO:0051607: defense response to virus	4.71E-02
140	GO:0006351: transcription, DNA-templated	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0050201: fucokinase activity	0.00E+00
2	GO:0004401: histidinol-phosphatase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
5	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
6	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
7	GO:0001872: (1->3)-beta-D-glucan binding	4.81E-05
8	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	3.73E-04
9	GO:0052381: tRNA dimethylallyltransferase activity	3.73E-04
10	GO:0004818: glutamate-tRNA ligase activity	3.73E-04
11	GO:0004832: valine-tRNA ligase activity	3.73E-04
12	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.73E-04
13	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.73E-04
14	GO:0000170: sphingosine hydroxylase activity	3.73E-04
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.73E-04
16	GO:0005227: calcium activated cation channel activity	3.73E-04
17	GO:0008805: carbon-monoxide oxygenase activity	8.10E-04
18	GO:0042284: sphingolipid delta-4 desaturase activity	8.10E-04
19	GO:0008934: inositol monophosphate 1-phosphatase activity	8.10E-04
20	GO:0008493: tetracycline transporter activity	8.10E-04
21	GO:0052833: inositol monophosphate 4-phosphatase activity	8.10E-04
22	GO:0004826: phenylalanine-tRNA ligase activity	8.10E-04
23	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	8.10E-04
24	GO:0050736: O-malonyltransferase activity	8.10E-04
25	GO:0009884: cytokinin receptor activity	8.10E-04
26	GO:0017118: lipoyltransferase activity	8.10E-04
27	GO:0003852: 2-isopropylmalate synthase activity	8.10E-04
28	GO:0043425: bHLH transcription factor binding	8.10E-04
29	GO:0004814: arginine-tRNA ligase activity	8.10E-04
30	GO:0004766: spermidine synthase activity	8.10E-04
31	GO:0052832: inositol monophosphate 3-phosphatase activity	8.10E-04
32	GO:0004817: cysteine-tRNA ligase activity	8.10E-04
33	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.10E-04
34	GO:0000049: tRNA binding	1.11E-03
35	GO:0004148: dihydrolipoyl dehydrogenase activity	1.31E-03
36	GO:0005034: osmosensor activity	1.31E-03
37	GO:0031418: L-ascorbic acid binding	1.95E-03
38	GO:0005345: purine nucleobase transmembrane transporter activity	2.16E-03
39	GO:0010328: auxin influx transmembrane transporter activity	2.54E-03
40	GO:0019199: transmembrane receptor protein kinase activity	2.54E-03
41	GO:0004335: galactokinase activity	2.54E-03
42	GO:0010011: auxin binding	2.54E-03
43	GO:0003723: RNA binding	2.76E-03
44	GO:0004523: RNA-DNA hybrid ribonuclease activity	3.25E-03
45	GO:0005471: ATP:ADP antiporter activity	3.25E-03
46	GO:0004812: aminoacyl-tRNA ligase activity	3.33E-03
47	GO:0000293: ferric-chelate reductase activity	4.02E-03
48	GO:0004462: lactoylglutathione lyase activity	4.02E-03
49	GO:0004709: MAP kinase kinase kinase activity	4.02E-03
50	GO:0015171: amino acid transmembrane transporter activity	4.05E-03
51	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.85E-03
52	GO:0016832: aldehyde-lyase activity	4.85E-03
53	GO:0019900: kinase binding	4.85E-03
54	GO:0004518: nuclease activity	5.12E-03
55	GO:0000156: phosphorelay response regulator activity	5.46E-03
56	GO:0051015: actin filament binding	5.46E-03
57	GO:0016413: O-acetyltransferase activity	6.55E-03
58	GO:0030247: polysaccharide binding	8.18E-03
59	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	8.66E-03
60	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.05E-02
61	GO:0004673: protein histidine kinase activity	1.09E-02
62	GO:0004805: trehalose-phosphatase activity	1.09E-02
63	GO:0008047: enzyme activator activity	1.09E-02
64	GO:0003697: single-stranded DNA binding	1.15E-02
65	GO:0003691: double-stranded telomeric DNA binding	1.20E-02
66	GO:0003725: double-stranded RNA binding	1.45E-02
67	GO:0000155: phosphorelay sensor kinase activity	1.45E-02
68	GO:0009982: pseudouridine synthase activity	1.45E-02
69	GO:0042802: identical protein binding	1.52E-02
70	GO:0043621: protein self-association	1.61E-02
71	GO:0015293: symporter activity	1.68E-02
72	GO:0008146: sulfotransferase activity	1.71E-02
73	GO:0003712: transcription cofactor activity	1.71E-02
74	GO:0004190: aspartic-type endopeptidase activity	1.71E-02
75	GO:0005528: FK506 binding	1.99E-02
76	GO:0005524: ATP binding	2.05E-02
77	GO:0043424: protein histidine kinase binding	2.14E-02
78	GO:0004707: MAP kinase activity	2.29E-02
79	GO:0033612: receptor serine/threonine kinase binding	2.29E-02
80	GO:0003964: RNA-directed DNA polymerase activity	2.29E-02
81	GO:0008408: 3'-5' exonuclease activity	2.29E-02
82	GO:0030570: pectate lyase activity	2.60E-02
83	GO:0016874: ligase activity	2.70E-02
84	GO:0003727: single-stranded RNA binding	2.76E-02
85	GO:0003676: nucleic acid binding	2.86E-02
86	GO:0047134: protein-disulfide reductase activity	2.92E-02
87	GO:0015035: protein disulfide oxidoreductase activity	2.95E-02
88	GO:0004527: exonuclease activity	3.25E-02
89	GO:0005199: structural constituent of cell wall	3.25E-02
90	GO:0004871: signal transducer activity	3.39E-02
91	GO:0042803: protein homodimerization activity	3.39E-02
92	GO:0050662: coenzyme binding	3.42E-02
93	GO:0004791: thioredoxin-disulfide reductase activity	3.42E-02
94	GO:0016829: lyase activity	3.88E-02
95	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.14E-02
96	GO:0005515: protein binding	4.31E-02
97	GO:0016759: cellulose synthase activity	4.33E-02
98	GO:0005200: structural constituent of cytoskeleton	4.52E-02
99	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009986: cell surface	3.33E-04
3	GO:0031357: integral component of chloroplast inner membrane	8.10E-04
4	GO:0019897: extrinsic component of plasma membrane	1.31E-03
5	GO:0030139: endocytic vesicle	1.31E-03
6	GO:0032585: multivesicular body membrane	1.89E-03
7	GO:0032432: actin filament bundle	1.89E-03
8	GO:0009507: chloroplast	6.52E-03
9	GO:0000783: nuclear telomere cap complex	7.64E-03
10	GO:0000418: DNA-directed RNA polymerase IV complex	1.09E-02
11	GO:0005884: actin filament	1.20E-02
12	GO:0009536: plastid	1.46E-02
13	GO:0030095: chloroplast photosystem II	1.58E-02
14	GO:0046658: anchored component of plasma membrane	1.60E-02
15	GO:0009654: photosystem II oxygen evolving complex	2.14E-02
16	GO:0015629: actin cytoskeleton	2.60E-02
17	GO:0009706: chloroplast inner membrane	2.87E-02
18	GO:0009543: chloroplast thylakoid lumen	3.59E-02
19	GO:0019898: extrinsic component of membrane	3.60E-02
20	GO:0005759: mitochondrial matrix	4.49E-02
21	GO:0030529: intracellular ribonucleoprotein complex	4.91E-02