Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G12740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071327: cellular response to trehalose stimulus0.00E+00
2GO:1902001: fatty acid transmembrane transport0.00E+00
3GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
4GO:1900067: regulation of cellular response to alkaline pH0.00E+00
5GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
6GO:0015690: aluminum cation transport0.00E+00
7GO:1900367: positive regulation of defense response to insect0.00E+00
8GO:0002376: immune system process0.00E+00
9GO:0046865: terpenoid transport0.00E+00
10GO:0010324: membrane invagination0.00E+00
11GO:0006952: defense response1.87E-10
12GO:0006979: response to oxidative stress5.71E-07
13GO:2000022: regulation of jasmonic acid mediated signaling pathway7.65E-06
14GO:0042391: regulation of membrane potential1.56E-05
15GO:0010112: regulation of systemic acquired resistance1.60E-05
16GO:0010150: leaf senescence3.58E-05
17GO:1903507: negative regulation of nucleic acid-templated transcription3.59E-05
18GO:0006468: protein phosphorylation4.20E-05
19GO:0060548: negative regulation of cell death5.93E-05
20GO:0009611: response to wounding7.44E-05
21GO:0009753: response to jasmonic acid9.47E-05
22GO:0009643: photosynthetic acclimation1.36E-04
23GO:0071456: cellular response to hypoxia1.69E-04
24GO:0009625: response to insect1.91E-04
25GO:0010200: response to chitin1.93E-04
26GO:0051707: response to other organism2.29E-04
27GO:1900056: negative regulation of leaf senescence2.42E-04
28GO:0048508: embryonic meristem development3.02E-04
29GO:0015760: glucose-6-phosphate transport3.02E-04
30GO:0019567: arabinose biosynthetic process3.02E-04
31GO:0080173: male-female gamete recognition during double fertilization3.02E-04
32GO:0033306: phytol metabolic process3.02E-04
33GO:0009700: indole phytoalexin biosynthetic process3.02E-04
34GO:0034214: protein hexamerization3.02E-04
35GO:1901183: positive regulation of camalexin biosynthetic process3.02E-04
36GO:0009270: response to humidity3.02E-04
37GO:0042759: long-chain fatty acid biosynthetic process3.02E-04
38GO:1990542: mitochondrial transmembrane transport3.02E-04
39GO:0030091: protein repair3.05E-04
40GO:0031347: regulation of defense response3.14E-04
41GO:0009646: response to absence of light3.28E-04
42GO:0007166: cell surface receptor signaling pathway3.52E-04
43GO:2000031: regulation of salicylic acid mediated signaling pathway3.75E-04
44GO:0010120: camalexin biosynthetic process3.75E-04
45GO:0010193: response to ozone3.93E-04
46GO:0006098: pentose-phosphate shunt4.52E-04
47GO:0042742: defense response to bacterium4.89E-04
48GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway5.34E-04
49GO:0009626: plant-type hypersensitive response5.36E-04
50GO:0080151: positive regulation of salicylic acid mediated signaling pathway6.60E-04
51GO:0009838: abscission6.60E-04
52GO:0010618: aerenchyma formation6.60E-04
53GO:0080181: lateral root branching6.60E-04
54GO:0055088: lipid homeostasis6.60E-04
55GO:0019521: D-gluconate metabolic process6.60E-04
56GO:0015908: fatty acid transport6.60E-04
57GO:0044419: interspecies interaction between organisms6.60E-04
58GO:0009945: radial axis specification6.60E-04
59GO:0015712: hexose phosphate transport6.60E-04
60GO:0010115: regulation of abscisic acid biosynthetic process6.60E-04
61GO:0051258: protein polymerization6.60E-04
62GO:0010271: regulation of chlorophyll catabolic process6.60E-04
63GO:0019725: cellular homeostasis6.60E-04
64GO:0071668: plant-type cell wall assembly6.60E-04
65GO:0019441: tryptophan catabolic process to kynurenine6.60E-04
66GO:0050832: defense response to fungus8.91E-04
67GO:0009266: response to temperature stimulus1.04E-03
68GO:0010186: positive regulation of cellular defense response1.07E-03
69GO:0015692: lead ion transport1.07E-03
70GO:0015695: organic cation transport1.07E-03
71GO:0015714: phosphoenolpyruvate transport1.07E-03
72GO:0080168: abscisic acid transport1.07E-03
73GO:1900055: regulation of leaf senescence1.07E-03
74GO:0006954: inflammatory response1.07E-03
75GO:1900140: regulation of seedling development1.07E-03
76GO:0035436: triose phosphate transmembrane transport1.07E-03
77GO:0045793: positive regulation of cell size1.07E-03
78GO:2000377: regulation of reactive oxygen species metabolic process1.44E-03
79GO:0046836: glycolipid transport1.53E-03
80GO:0010116: positive regulation of abscisic acid biosynthetic process1.53E-03
81GO:0048194: Golgi vesicle budding1.53E-03
82GO:0015696: ammonium transport1.53E-03
83GO:0051289: protein homotetramerization1.53E-03
84GO:0046513: ceramide biosynthetic process1.53E-03
85GO:0009751: response to salicylic acid1.72E-03
86GO:0031348: negative regulation of defense response1.90E-03
87GO:1901141: regulation of lignin biosynthetic process2.06E-03
88GO:0010109: regulation of photosynthesis2.06E-03
89GO:0045227: capsule polysaccharide biosynthetic process2.06E-03
90GO:0048638: regulation of developmental growth2.06E-03
91GO:0009652: thigmotropism2.06E-03
92GO:0072488: ammonium transmembrane transport2.06E-03
93GO:0033358: UDP-L-arabinose biosynthetic process2.06E-03
94GO:0015713: phosphoglycerate transport2.06E-03
95GO:0080142: regulation of salicylic acid biosynthetic process2.06E-03
96GO:0010225: response to UV-C2.63E-03
97GO:0034052: positive regulation of plant-type hypersensitive response2.63E-03
98GO:0009164: nucleoside catabolic process2.63E-03
99GO:0009697: salicylic acid biosynthetic process2.63E-03
100GO:0007165: signal transduction2.84E-03
101GO:0009737: response to abscisic acid3.00E-03
102GO:0010405: arabinogalactan protein metabolic process3.24E-03
103GO:0018258: protein O-linked glycosylation via hydroxyproline3.24E-03
104GO:0009117: nucleotide metabolic process3.24E-03
105GO:0006574: valine catabolic process3.24E-03
106GO:0002238: response to molecule of fungal origin3.24E-03
107GO:0009759: indole glucosinolate biosynthetic process3.24E-03
108GO:0010942: positive regulation of cell death3.24E-03
109GO:0009624: response to nematode3.73E-03
110GO:0010310: regulation of hydrogen peroxide metabolic process3.90E-03
111GO:0042372: phylloquinone biosynthetic process3.90E-03
112GO:0009612: response to mechanical stimulus3.90E-03
113GO:0009942: longitudinal axis specification3.90E-03
114GO:0080167: response to karrikin3.98E-03
115GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway4.60E-03
116GO:0043090: amino acid import4.60E-03
117GO:0071446: cellular response to salicylic acid stimulus4.60E-03
118GO:0050829: defense response to Gram-negative bacterium4.60E-03
119GO:1902074: response to salt4.60E-03
120GO:0009787: regulation of abscisic acid-activated signaling pathway5.35E-03
121GO:0009819: drought recovery5.35E-03
122GO:0043068: positive regulation of programmed cell death5.35E-03
123GO:0009627: systemic acquired resistance5.66E-03
124GO:0010208: pollen wall assembly6.13E-03
125GO:0010204: defense response signaling pathway, resistance gene-independent6.13E-03
126GO:0030968: endoplasmic reticulum unfolded protein response6.13E-03
127GO:0019432: triglyceride biosynthetic process6.95E-03
128GO:0046916: cellular transition metal ion homeostasis6.95E-03
129GO:0009407: toxin catabolic process7.29E-03
130GO:0010119: regulation of stomatal movement7.65E-03
131GO:1900426: positive regulation of defense response to bacterium7.80E-03
132GO:0048354: mucilage biosynthetic process involved in seed coat development7.80E-03
133GO:0010380: regulation of chlorophyll biosynthetic process7.80E-03
134GO:0009867: jasmonic acid mediated signaling pathway8.39E-03
135GO:0010629: negative regulation of gene expression8.70E-03
136GO:0019538: protein metabolic process8.70E-03
137GO:0009870: defense response signaling pathway, resistance gene-dependent8.70E-03
138GO:0006032: chitin catabolic process8.70E-03
139GO:0043069: negative regulation of programmed cell death8.70E-03
140GO:0009617: response to bacterium9.39E-03
141GO:0048229: gametophyte development9.63E-03
142GO:0006897: endocytosis9.98E-03
143GO:0002213: defense response to insect1.06E-02
144GO:0010105: negative regulation of ethylene-activated signaling pathway1.06E-02
145GO:2000012: regulation of auxin polar transport1.16E-02
146GO:0009636: response to toxic substance1.22E-02
147GO:0006855: drug transmembrane transport1.27E-02
148GO:0009225: nucleotide-sugar metabolic process1.37E-02
149GO:0080147: root hair cell development1.59E-02
150GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.79E-02
151GO:0016998: cell wall macromolecule catabolic process1.82E-02
152GO:0006012: galactose metabolic process2.07E-02
153GO:0070417: cellular response to cold2.33E-02
154GO:0042631: cellular response to water deprivation2.46E-02
155GO:0000271: polysaccharide biosynthetic process2.46E-02
156GO:0000413: protein peptidyl-prolyl isomerization2.46E-02
157GO:0045489: pectin biosynthetic process2.59E-02
158GO:0006520: cellular amino acid metabolic process2.59E-02
159GO:0009408: response to heat2.80E-02
160GO:0009749: response to glucose2.87E-02
161GO:0002229: defense response to oomycetes3.01E-02
162GO:0000302: response to reactive oxygen species3.01E-02
163GO:0009790: embryo development3.05E-02
164GO:0019761: glucosinolate biosynthetic process3.16E-02
165GO:0006904: vesicle docking involved in exocytosis3.61E-02
166GO:0055114: oxidation-reduction process3.62E-02
167GO:0001666: response to hypoxia3.92E-02
168GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.07E-02
169GO:0009816: defense response to bacterium, incompatible interaction4.07E-02
170GO:0006470: protein dephosphorylation4.12E-02
171GO:0016567: protein ubiquitination4.37E-02
172GO:0006950: response to stress4.40E-02
173GO:0009414: response to water deprivation4.65E-02
174GO:0008219: cell death4.73E-02
175GO:0010311: lateral root formation4.90E-02
176GO:0009832: plant-type cell wall biogenesis4.90E-02
RankGO TermAdjusted P value
1GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
2GO:0030552: cAMP binding2.47E-06
3GO:0030553: cGMP binding2.47E-06
4GO:0005216: ion channel activity5.05E-06
5GO:0005249: voltage-gated potassium channel activity1.56E-05
6GO:0030551: cyclic nucleotide binding1.56E-05
7GO:0016301: kinase activity2.89E-05
8GO:0003714: transcription corepressor activity1.11E-04
9GO:0033743: peptide-methionine (R)-S-oxide reductase activity1.85E-04
10GO:0004012: phospholipid-translocating ATPase activity1.85E-04
11GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity1.85E-04
12GO:0004674: protein serine/threonine kinase activity1.93E-04
13GO:2001227: quercitrin binding3.02E-04
14GO:0019707: protein-cysteine S-acyltransferase activity3.02E-04
15GO:2001147: camalexin binding3.02E-04
16GO:0015245: fatty acid transporter activity3.02E-04
17GO:0004714: transmembrane receptor protein tyrosine kinase activity3.05E-04
18GO:0019901: protein kinase binding3.60E-04
19GO:0005524: ATP binding4.16E-04
20GO:0050291: sphingosine N-acyltransferase activity6.60E-04
21GO:0047364: desulfoglucosinolate sulfotransferase activity6.60E-04
22GO:0015152: glucose-6-phosphate transmembrane transporter activity6.60E-04
23GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity6.60E-04
24GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity6.60E-04
25GO:0004061: arylformamidase activity6.60E-04
26GO:0004385: guanylate kinase activity6.60E-04
27GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism9.29E-04
28GO:0071917: triose-phosphate transmembrane transporter activity1.07E-03
29GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.07E-03
30GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.07E-03
31GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.32E-03
32GO:0005509: calcium ion binding1.36E-03
33GO:0017077: oxidative phosphorylation uncoupler activity1.53E-03
34GO:0017089: glycolipid transporter activity1.53E-03
35GO:0050373: UDP-arabinose 4-epimerase activity2.06E-03
36GO:0051861: glycolipid binding2.06E-03
37GO:0015120: phosphoglycerate transmembrane transporter activity2.06E-03
38GO:0004499: N,N-dimethylaniline monooxygenase activity2.25E-03
39GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.63E-03
40GO:0005496: steroid binding2.63E-03
41GO:0047631: ADP-ribose diphosphatase activity2.63E-03
42GO:0008519: ammonium transmembrane transporter activity3.24E-03
43GO:1990714: hydroxyproline O-galactosyltransferase activity3.24E-03
44GO:0000210: NAD+ diphosphatase activity3.24E-03
45GO:0043531: ADP binding3.30E-03
46GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.90E-03
47GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides3.90E-03
48GO:0005261: cation channel activity3.90E-03
49GO:0003978: UDP-glucose 4-epimerase activity3.90E-03
50GO:0004144: diacylglycerol O-acyltransferase activity3.90E-03
51GO:0004497: monooxygenase activity3.98E-03
52GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.51E-03
53GO:0008320: protein transmembrane transporter activity4.60E-03
54GO:0043295: glutathione binding4.60E-03
55GO:0016758: transferase activity, transferring hexosyl groups4.80E-03
56GO:0005544: calcium-dependent phospholipid binding5.35E-03
57GO:0004033: aldo-keto reductase (NADP) activity5.35E-03
58GO:0004806: triglyceride lipase activity5.97E-03
59GO:0071949: FAD binding6.95E-03
60GO:0047617: acyl-CoA hydrolase activity7.80E-03
61GO:0004568: chitinase activity8.70E-03
62GO:0008171: O-methyltransferase activity8.70E-03
63GO:0015020: glucuronosyltransferase activity8.70E-03
64GO:0050661: NADP binding9.56E-03
65GO:0043565: sequence-specific DNA binding9.68E-03
66GO:0004842: ubiquitin-protein transferase activity9.92E-03
67GO:0004364: glutathione transferase activity1.04E-02
68GO:0008378: galactosyltransferase activity1.06E-02
69GO:0004672: protein kinase activity1.12E-02
70GO:0005315: inorganic phosphate transmembrane transporter activity1.16E-02
71GO:0004190: aspartic-type endopeptidase activity1.37E-02
72GO:0008146: sulfotransferase activity1.37E-02
73GO:0016298: lipase activity1.52E-02
74GO:0050660: flavin adenine dinucleotide binding1.57E-02
75GO:0003954: NADH dehydrogenase activity1.59E-02
76GO:0019706: protein-cysteine S-palmitoyltransferase activity1.82E-02
77GO:0033612: receptor serine/threonine kinase binding1.82E-02
78GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.95E-02
79GO:0004722: protein serine/threonine phosphatase activity2.42E-02
80GO:0030246: carbohydrate binding2.67E-02
81GO:0005516: calmodulin binding3.14E-02
82GO:0004197: cysteine-type endopeptidase activity3.16E-02
83GO:0015297: antiporter activity3.44E-02
84GO:0008483: transaminase activity3.61E-02
85GO:0008194: UDP-glycosyltransferase activity4.03E-02
86GO:0030247: polysaccharide binding4.40E-02
87GO:0004721: phosphoprotein phosphatase activity4.40E-02
88GO:0015238: drug transmembrane transporter activity4.90E-02
89GO:0005096: GTPase activator activity4.90E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0005886: plasma membrane1.34E-11
3GO:0016021: integral component of membrane6.18E-07
4GO:0005901: caveola4.15E-06
5GO:0000138: Golgi trans cisterna3.02E-04
6GO:0031304: intrinsic component of mitochondrial inner membrane6.60E-04
7GO:0008287: protein serine/threonine phosphatase complex1.07E-03
8GO:0070062: extracellular exosome1.53E-03
9GO:0005777: peroxisome1.72E-03
10GO:0005887: integral component of plasma membrane3.02E-03
11GO:0030125: clathrin vesicle coat8.70E-03
12GO:0005794: Golgi apparatus1.37E-02
13GO:0005769: early endosome1.48E-02
14GO:0005905: clathrin-coated pit1.82E-02
15GO:0005737: cytoplasm2.27E-02
16GO:0000145: exocyst3.16E-02
17GO:0005789: endoplasmic reticulum membrane3.36E-02
18GO:0005802: trans-Golgi network3.44E-02
19GO:0032580: Golgi cisterna membrane3.46E-02
20GO:0009506: plasmodesma4.63E-02
21GO:0000151: ubiquitin ligase complex4.73E-02
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Gene type



Gene DE type