Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G12650

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0097222: mitochondrial mRNA polyadenylation0.00E+00
2GO:0035335: peptidyl-tyrosine dephosphorylation2.19E-05
3GO:0048577: negative regulation of short-day photoperiodism, flowering6.14E-05
4GO:0010440: stomatal lineage progression6.14E-05
5GO:0072334: UDP-galactose transmembrane transport6.14E-05
6GO:0010971: positive regulation of G2/M transition of mitotic cell cycle6.14E-05
7GO:0000165: MAPK cascade1.21E-04
8GO:2000033: regulation of seed dormancy process1.71E-04
9GO:0006396: RNA processing2.04E-04
10GO:0000338: protein deneddylation2.04E-04
11GO:0009938: negative regulation of gibberellic acid mediated signaling pathway2.37E-04
12GO:0010100: negative regulation of photomorphogenesis2.71E-04
13GO:0048574: long-day photoperiodism, flowering2.71E-04
14GO:0015780: nucleotide-sugar transport3.07E-04
15GO:0043085: positive regulation of catalytic activity4.19E-04
16GO:0045944: positive regulation of transcription from RNA polymerase II promoter4.90E-04
17GO:0042753: positive regulation of circadian rhythm6.22E-04
18GO:0006406: mRNA export from nucleus6.66E-04
19GO:2000377: regulation of reactive oxygen species metabolic process6.66E-04
20GO:0009863: salicylic acid mediated signaling pathway6.66E-04
21GO:0010187: negative regulation of seed germination6.66E-04
22GO:0048511: rhythmic process7.53E-04
23GO:0009908: flower development1.47E-03
24GO:0010029: regulation of seed germination1.56E-03
25GO:0009910: negative regulation of flower development1.97E-03
26GO:0009867: jasmonic acid mediated signaling pathway2.10E-03
27GO:0009640: photomorphogenesis2.49E-03
28GO:0008643: carbohydrate transport2.62E-03
29GO:0042538: hyperosmotic salinity response2.90E-03
30GO:0009585: red, far-red light phototransduction3.04E-03
31GO:0009740: gibberellic acid mediated signaling pathway3.71E-03
32GO:0000398: mRNA splicing, via spliceosome4.26E-03
33GO:0009058: biosynthetic process4.67E-03
34GO:0009739: response to gibberellin6.06E-03
35GO:0009723: response to ethylene8.41E-03
36GO:0016192: vesicle-mediated transport9.14E-03
37GO:0006886: intracellular protein transport1.02E-02
38GO:0009555: pollen development1.74E-02
39GO:0055085: transmembrane transport2.06E-02
40GO:0071555: cell wall organization2.88E-02
41GO:0030154: cell differentiation3.06E-02
42GO:0006810: transport3.79E-02
43GO:0005975: carbohydrate metabolic process3.88E-02
44GO:0007275: multicellular organism development4.67E-02
45GO:0009737: response to abscisic acid4.94E-02
RankGO TermAdjusted P value
1GO:0000384: first spliceosomal transesterification activity0.00E+00
2GO:0019211: phosphatase activator activity0.00E+00
3GO:0019784: NEDD8-specific protease activity8.12E-06
4GO:0005459: UDP-galactose transmembrane transporter activity1.12E-04
5GO:0022857: transmembrane transporter activity1.85E-04
6GO:0005338: nucleotide-sugar transmembrane transporter activity2.04E-04
7GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.84E-04
8GO:0000989: transcription factor activity, transcription factor binding3.07E-04
9GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity3.07E-04
10GO:0004725: protein tyrosine phosphatase activity6.22E-04
11GO:0008134: transcription factor binding6.66E-04
12GO:0004222: metalloendopeptidase activity1.91E-03
13GO:0004650: polygalacturonase activity3.63E-03
14GO:0046983: protein dimerization activity4.30E-03
15GO:0016829: lyase activity4.75E-03
16GO:0015297: antiporter activity5.44E-03
17GO:0042803: protein homodimerization activity1.03E-02
18GO:0004722: protein serine/threonine phosphatase activity1.07E-02
19GO:0016740: transferase activity2.01E-02
20GO:0003723: RNA binding2.53E-02
21GO:0005515: protein binding4.19E-02
22GO:0016787: hydrolase activity4.96E-02
RankGO TermAdjusted P value
1GO:0070274: RES complex0.00E+00
2GO:0030131: clathrin adaptor complex2.37E-04
3GO:0008180: COP9 signalosome3.07E-04
4GO:0071011: precatalytic spliceosome3.43E-04
5GO:0030665: clathrin-coated vesicle membrane3.43E-04
6GO:0030125: clathrin vesicle coat3.81E-04
7GO:0005686: U2 snRNP3.81E-04
8GO:0071013: catalytic step 2 spliceosome4.19E-04
9GO:0043234: protein complex6.22E-04
10GO:0016607: nuclear speck3.48E-03
11GO:0005794: Golgi apparatus1.30E-02
12GO:0000139: Golgi membrane3.58E-02
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Gene type



Gene DE type