co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12345

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	4.15E-11
6	GO:0090391: granum assembly	1.17E-06
7	GO:0006094: gluconeogenesis	2.15E-06
8	GO:0010207: photosystem II assembly	2.68E-06
9	GO:0006096: glycolytic process	1.43E-05
10	GO:0055114: oxidation-reduction process	1.92E-05
11	GO:0006098: pentose-phosphate shunt	5.64E-05
12	GO:0071277: cellular response to calcium ion	7.39E-05
13	GO:0046467: membrane lipid biosynthetic process	7.39E-05
14	GO:0015671: oxygen transport	7.39E-05
15	GO:0080093: regulation of photorespiration	7.39E-05
16	GO:0031998: regulation of fatty acid beta-oxidation	7.39E-05
17	GO:0010143: cutin biosynthetic process	1.50E-04
18	GO:0071457: cellular response to ozone	1.77E-04
19	GO:0010025: wax biosynthetic process	1.91E-04
20	GO:0006636: unsaturated fatty acid biosynthetic process	1.91E-04
21	GO:0015979: photosynthesis	2.40E-04
22	GO:0042631: cellular response to water deprivation	4.00E-04
23	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.32E-04
24	GO:0071484: cellular response to light intensity	4.32E-04
25	GO:0071486: cellular response to high light intensity	5.75E-04
26	GO:0045727: positive regulation of translation	5.75E-04
27	GO:0015994: chlorophyll metabolic process	5.75E-04
28	GO:0006097: glyoxylate cycle	7.29E-04
29	GO:0006465: signal peptide processing	7.29E-04
30	GO:0071493: cellular response to UV-B	7.29E-04
31	GO:0015995: chlorophyll biosynthetic process	8.83E-04
32	GO:0010190: cytochrome b6f complex assembly	8.91E-04
33	GO:0042549: photosystem II stabilization	8.91E-04
34	GO:0006810: transport	1.02E-03
35	GO:0010189: vitamin E biosynthetic process	1.06E-03
36	GO:0009854: oxidative photosynthetic carbon pathway	1.06E-03
37	GO:0010196: nonphotochemical quenching	1.24E-03
38	GO:0034599: cellular response to oxidative stress	1.27E-03
39	GO:0009704: de-etiolation	1.43E-03
40	GO:0009642: response to light intensity	1.43E-03
41	GO:0006631: fatty acid metabolic process	1.44E-03
42	GO:0019430: removal of superoxide radicals	1.63E-03
43	GO:0032544: plastid translation	1.63E-03
44	GO:0071482: cellular response to light stimulus	1.63E-03
45	GO:0019432: triglyceride biosynthetic process	1.83E-03
46	GO:0090333: regulation of stomatal closure	1.83E-03
47	GO:0006783: heme biosynthetic process	1.83E-03
48	GO:0006779: porphyrin-containing compound biosynthetic process	2.05E-03
49	GO:0006782: protoporphyrinogen IX biosynthetic process	2.28E-03
50	GO:0043085: positive regulation of catalytic activity	2.51E-03
51	GO:0000272: polysaccharide catabolic process	2.51E-03
52	GO:0018119: peptidyl-cysteine S-nitrosylation	2.51E-03
53	GO:0006108: malate metabolic process	3.00E-03
54	GO:0006006: glucose metabolic process	3.00E-03
55	GO:0019253: reductive pentose-phosphate cycle	3.25E-03
56	GO:0009266: response to temperature stimulus	3.25E-03
57	GO:0009735: response to cytokinin	4.30E-03
58	GO:0009768: photosynthesis, light harvesting in photosystem I	4.34E-03
59	GO:0006633: fatty acid biosynthetic process	4.61E-03
60	GO:0005975: carbohydrate metabolic process	4.75E-03
61	GO:0030433: ubiquitin-dependent ERAD pathway	4.93E-03
62	GO:0019748: secondary metabolic process	4.93E-03
63	GO:0042335: cuticle development	6.18E-03
64	GO:0006662: glycerol ether metabolic process	6.51E-03
65	GO:0071472: cellular response to salt stress	6.51E-03
66	GO:0010193: response to ozone	7.53E-03
67	GO:0080167: response to karrikin	9.71E-03
68	GO:0010027: thylakoid membrane organization	9.74E-03
69	GO:0042128: nitrate assimilation	1.05E-02
70	GO:0018298: protein-chromophore linkage	1.17E-02
71	GO:0010311: lateral root formation	1.22E-02
72	GO:0010218: response to far red light	1.26E-02
73	GO:0006869: lipid transport	1.28E-02
74	GO:0009637: response to blue light	1.39E-02
75	GO:0009853: photorespiration	1.39E-02
76	GO:0006099: tricarboxylic acid cycle	1.43E-02
77	GO:0010114: response to red light	1.66E-02
78	GO:0000209: protein polyubiquitination	1.71E-02
79	GO:0009409: response to cold	1.73E-02
80	GO:0006855: drug transmembrane transport	1.85E-02
81	GO:0006364: rRNA processing	2.05E-02
82	GO:0010224: response to UV-B	2.10E-02
83	GO:0051603: proteolysis involved in cellular protein catabolic process	2.10E-02
84	GO:0009416: response to light stimulus	2.55E-02
85	GO:0042545: cell wall modification	2.58E-02
86	GO:0009611: response to wounding	2.61E-02
87	GO:0009742: brassinosteroid mediated signaling pathway	2.75E-02
88	GO:0007623: circadian rhythm	3.89E-02
89	GO:0010150: leaf senescence	3.89E-02
90	GO:0045490: pectin catabolic process	3.89E-02
91	GO:0010468: regulation of gene expression	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0008465: glycerate dehydrogenase activity	0.00E+00
4	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
5	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
6	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
7	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
8	GO:0004332: fructose-bisphosphate aldolase activity	5.55E-08
9	GO:0031957: very long-chain fatty acid-CoA ligase activity	7.39E-05
10	GO:0005344: oxygen transporter activity	7.39E-05
11	GO:0035671: enone reductase activity	7.39E-05
12	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	7.39E-05
13	GO:0004565: beta-galactosidase activity	1.31E-04
14	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.77E-04
15	GO:0008883: glutamyl-tRNA reductase activity	1.77E-04
16	GO:0047746: chlorophyllase activity	1.77E-04
17	GO:0042389: omega-3 fatty acid desaturase activity	1.77E-04
18	GO:0010297: heteropolysaccharide binding	1.77E-04
19	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.99E-04
20	GO:0050734: hydroxycinnamoyltransferase activity	2.99E-04
21	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	4.32E-04
22	GO:0009011: starch synthase activity	5.75E-04
23	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.75E-04
24	GO:0004784: superoxide dismutase activity	8.91E-04
25	GO:0016615: malate dehydrogenase activity	8.91E-04
26	GO:0030060: L-malate dehydrogenase activity	1.06E-03
27	GO:0102391: decanoate--CoA ligase activity	1.06E-03
28	GO:0004467: long-chain fatty acid-CoA ligase activity	1.24E-03
29	GO:0050661: NADP binding	1.38E-03
30	GO:0004185: serine-type carboxypeptidase activity	1.56E-03
31	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.63E-03
32	GO:0051537: 2 iron, 2 sulfur cluster binding	1.68E-03
33	GO:0051287: NAD binding	1.88E-03
34	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.05E-03
35	GO:0030234: enzyme regulator activity	2.28E-03
36	GO:0008047: enzyme activator activity	2.28E-03
37	GO:0008266: poly(U) RNA binding	3.25E-03
38	GO:0031409: pigment binding	3.78E-03
39	GO:0047134: protein-disulfide reductase activity	5.86E-03
40	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	6.43E-03
41	GO:0050662: coenzyme binding	6.84E-03
42	GO:0004791: thioredoxin-disulfide reductase activity	6.84E-03
43	GO:0030246: carbohydrate binding	7.02E-03
44	GO:0048038: quinone binding	7.53E-03
45	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.25E-03
46	GO:0016168: chlorophyll binding	1.01E-02
47	GO:0016491: oxidoreductase activity	1.67E-02
48	GO:0045330: aspartyl esterase activity	2.21E-02
49	GO:0031625: ubiquitin protein ligase binding	2.21E-02
50	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.37E-02
51	GO:0030599: pectinesterase activity	2.53E-02
52	GO:0015035: protein disulfide oxidoreductase activity	2.69E-02
53	GO:0016787: hydrolase activity	3.08E-02
54	GO:0019843: rRNA binding	3.10E-02
55	GO:0016740: transferase activity	3.11E-02
56	GO:0003743: translation initiation factor activity	4.35E-02
57	GO:0042802: identical protein binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009507: chloroplast	8.94E-24
3	GO:0009535: chloroplast thylakoid membrane	5.91E-15
4	GO:0009534: chloroplast thylakoid	3.36E-13
5	GO:0009941: chloroplast envelope	2.22E-11
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.63E-09
7	GO:0009579: thylakoid	5.14E-09
8	GO:0048046: apoplast	1.20E-07
9	GO:0010287: plastoglobule	1.17E-06
10	GO:0009570: chloroplast stroma	2.10E-06
11	GO:0009543: chloroplast thylakoid lumen	3.26E-05
12	GO:0010319: stromule	3.43E-05
13	GO:0009515: granal stacked thylakoid	7.39E-05
14	GO:0005787: signal peptidase complex	7.39E-05
15	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.77E-04
16	GO:0031969: chloroplast membrane	1.93E-04
17	GO:0005777: peroxisome	1.07E-03
18	GO:0031977: thylakoid lumen	1.44E-03
19	GO:0030095: chloroplast photosystem II	3.25E-03
20	GO:0030076: light-harvesting complex	3.51E-03
21	GO:0043234: protein complex	3.78E-03
22	GO:0042651: thylakoid membrane	4.34E-03
23	GO:0009654: photosystem II oxygen evolving complex	4.34E-03
24	GO:0016021: integral component of membrane	5.80E-03
25	GO:0009522: photosystem I	6.84E-03
26	GO:0009523: photosystem II	7.19E-03
27	GO:0019898: extrinsic component of membrane	7.19E-03
28	GO:0005773: vacuole	9.64E-03
29	GO:0005623: cell	3.16E-02
30	GO:0005615: extracellular space	4.22E-02