co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000372: Group I intron splicing	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
6	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
7	GO:0032206: positive regulation of telomere maintenance	0.00E+00
8	GO:0046486: glycerolipid metabolic process	0.00E+00
9	GO:0006907: pinocytosis	0.00E+00
10	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
11	GO:0070125: mitochondrial translational elongation	0.00E+00
12	GO:0000373: Group II intron splicing	7.53E-06
13	GO:0040008: regulation of growth	5.37E-05
14	GO:0046620: regulation of organ growth	9.94E-05
15	GO:0009733: response to auxin	1.04E-04
16	GO:1900865: chloroplast RNA modification	2.30E-04
17	GO:0009734: auxin-activated signaling pathway	2.55E-04
18	GO:0016123: xanthophyll biosynthetic process	4.89E-04
19	GO:0009926: auxin polar transport	5.45E-04
20	GO:0016554: cytidine to uridine editing	6.76E-04
21	GO:0034757: negative regulation of iron ion transport	8.58E-04
22	GO:0009090: homoserine biosynthetic process	8.58E-04
23	GO:0043489: RNA stabilization	8.58E-04
24	GO:0019478: D-amino acid catabolic process	8.58E-04
25	GO:0043686: co-translational protein modification	8.58E-04
26	GO:0043087: regulation of GTPase activity	8.58E-04
27	GO:0043609: regulation of carbon utilization	8.58E-04
28	GO:0000066: mitochondrial ornithine transport	8.58E-04
29	GO:0015904: tetracycline transport	8.58E-04
30	GO:0009451: RNA modification	1.29E-03
31	GO:0000105: histidine biosynthetic process	1.41E-03
32	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.47E-03
33	GO:2000123: positive regulation of stomatal complex development	1.86E-03
34	GO:0043039: tRNA aminoacylation	1.86E-03
35	GO:0048255: mRNA stabilization	1.86E-03
36	GO:1900871: chloroplast mRNA modification	1.86E-03
37	GO:0010271: regulation of chlorophyll catabolic process	1.86E-03
38	GO:0006432: phenylalanyl-tRNA aminoacylation	1.86E-03
39	GO:0006650: glycerophospholipid metabolic process	1.86E-03
40	GO:0001736: establishment of planar polarity	1.86E-03
41	GO:0080009: mRNA methylation	1.86E-03
42	GO:0009786: regulation of asymmetric cell division	1.86E-03
43	GO:0031648: protein destabilization	1.86E-03
44	GO:0009958: positive gravitropism	2.19E-03
45	GO:0048829: root cap development	2.89E-03
46	GO:0045910: negative regulation of DNA recombination	3.08E-03
47	GO:0090506: axillary shoot meristem initiation	3.08E-03
48	GO:0033591: response to L-ascorbic acid	3.08E-03
49	GO:0080117: secondary growth	3.08E-03
50	GO:0006000: fructose metabolic process	3.08E-03
51	GO:0046168: glycerol-3-phosphate catabolic process	3.08E-03
52	GO:0071398: cellular response to fatty acid	3.08E-03
53	GO:0030029: actin filament-based process	3.08E-03
54	GO:0009793: embryo development ending in seed dormancy	3.50E-03
55	GO:0010582: floral meristem determinacy	3.84E-03
56	GO:0009725: response to hormone	4.38E-03
57	GO:0051639: actin filament network formation	4.50E-03
58	GO:0034059: response to anoxia	4.50E-03
59	GO:0010239: chloroplast mRNA processing	4.50E-03
60	GO:0044211: CTP salvage	4.50E-03
61	GO:0009800: cinnamic acid biosynthetic process	4.50E-03
62	GO:0006072: glycerol-3-phosphate metabolic process	4.50E-03
63	GO:2000904: regulation of starch metabolic process	4.50E-03
64	GO:1990019: protein storage vacuole organization	4.50E-03
65	GO:0045017: glycerolipid biosynthetic process	4.50E-03
66	GO:0009067: aspartate family amino acid biosynthetic process	4.50E-03
67	GO:0010371: regulation of gibberellin biosynthetic process	4.50E-03
68	GO:0051513: regulation of monopolar cell growth	4.50E-03
69	GO:0010020: chloroplast fission	4.95E-03
70	GO:0051764: actin crosslink formation	6.09E-03
71	GO:0042274: ribosomal small subunit biogenesis	6.09E-03
72	GO:0009765: photosynthesis, light harvesting	6.09E-03
73	GO:2000038: regulation of stomatal complex development	6.09E-03
74	GO:0006021: inositol biosynthetic process	6.09E-03
75	GO:0044206: UMP salvage	6.09E-03
76	GO:0009956: radial pattern formation	6.09E-03
77	GO:0009755: hormone-mediated signaling pathway	6.09E-03
78	GO:0006863: purine nucleobase transport	6.21E-03
79	GO:0051017: actin filament bundle assembly	6.90E-03
80	GO:0005992: trehalose biosynthetic process	6.90E-03
81	GO:0010438: cellular response to sulfur starvation	7.84E-03
82	GO:0010158: abaxial cell fate specification	7.84E-03
83	GO:0010375: stomatal complex patterning	7.84E-03
84	GO:0080110: sporopollenin biosynthetic process	7.84E-03
85	GO:0016131: brassinosteroid metabolic process	7.84E-03
86	GO:0009696: salicylic acid metabolic process	7.84E-03
87	GO:0016120: carotene biosynthetic process	7.84E-03
88	GO:0048497: maintenance of floral organ identity	7.84E-03
89	GO:0045487: gibberellin catabolic process	7.84E-03
90	GO:0031365: N-terminal protein amino acid modification	7.84E-03
91	GO:0009107: lipoate biosynthetic process	7.84E-03
92	GO:0006865: amino acid transport	8.36E-03
93	GO:0009913: epidermal cell differentiation	9.75E-03
94	GO:1902456: regulation of stomatal opening	9.75E-03
95	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	9.75E-03
96	GO:0048831: regulation of shoot system development	9.75E-03
97	GO:0010190: cytochrome b6f complex assembly	9.75E-03
98	GO:0033365: protein localization to organelle	9.75E-03
99	GO:0003006: developmental process involved in reproduction	9.75E-03
100	GO:0006559: L-phenylalanine catabolic process	9.75E-03
101	GO:0006206: pyrimidine nucleobase metabolic process	9.75E-03
102	GO:0009658: chloroplast organization	9.92E-03
103	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.01E-02
104	GO:0009686: gibberellin biosynthetic process	1.01E-02
105	GO:0006839: mitochondrial transport	1.05E-02
106	GO:0009416: response to light stimulus	1.12E-02
107	GO:0071333: cellular response to glucose stimulus	1.18E-02
108	GO:0009082: branched-chain amino acid biosynthetic process	1.18E-02
109	GO:0048509: regulation of meristem development	1.18E-02
110	GO:0009099: valine biosynthetic process	1.18E-02
111	GO:0030488: tRNA methylation	1.18E-02
112	GO:0031930: mitochondria-nucleus signaling pathway	1.18E-02
113	GO:0009088: threonine biosynthetic process	1.18E-02
114	GO:0009648: photoperiodism	1.18E-02
115	GO:0016117: carotenoid biosynthetic process	1.19E-02
116	GO:0010087: phloem or xylem histogenesis	1.29E-02
117	GO:0010305: leaf vascular tissue pattern formation	1.39E-02
118	GO:0006955: immune response	1.40E-02
119	GO:0010050: vegetative phase change	1.40E-02
120	GO:0010098: suspensor development	1.40E-02
121	GO:0015693: magnesium ion transport	1.40E-02
122	GO:0006402: mRNA catabolic process	1.64E-02
123	GO:0010439: regulation of glucosinolate biosynthetic process	1.64E-02
124	GO:0009819: drought recovery	1.64E-02
125	GO:0009850: auxin metabolic process	1.64E-02
126	GO:0009690: cytokinin metabolic process	1.64E-02
127	GO:0070413: trehalose metabolism in response to stress	1.64E-02
128	GO:2000070: regulation of response to water deprivation	1.64E-02
129	GO:0010583: response to cyclopentenone	1.84E-02
130	GO:0032502: developmental process	1.84E-02
131	GO:0006002: fructose 6-phosphate metabolic process	1.88E-02
132	GO:0071482: cellular response to light stimulus	1.88E-02
133	GO:0010497: plasmodesmata-mediated intercellular transport	1.88E-02
134	GO:0009657: plastid organization	1.88E-02
135	GO:0009097: isoleucine biosynthetic process	1.88E-02
136	GO:0032544: plastid translation	1.88E-02
137	GO:0045892: negative regulation of transcription, DNA-templated	2.02E-02
138	GO:0009639: response to red or far red light	2.10E-02
139	GO:0006464: cellular protein modification process	2.10E-02
140	GO:0009828: plant-type cell wall loosening	2.10E-02
141	GO:0051865: protein autoubiquitination	2.14E-02
142	GO:0006098: pentose-phosphate shunt	2.14E-02
143	GO:0048507: meristem development	2.14E-02
144	GO:0006779: porphyrin-containing compound biosynthetic process	2.42E-02
145	GO:0000723: telomere maintenance	2.42E-02
146	GO:0009098: leucine biosynthetic process	2.42E-02
147	GO:0042761: very long-chain fatty acid biosynthetic process	2.42E-02
148	GO:0010018: far-red light signaling pathway	2.42E-02
149	GO:0009086: methionine biosynthetic process	2.42E-02
150	GO:0016571: histone methylation	2.42E-02
151	GO:0016573: histone acetylation	2.42E-02
152	GO:0010192: mucilage biosynthetic process	2.70E-02
153	GO:0010629: negative regulation of gene expression	2.70E-02
154	GO:0009299: mRNA transcription	2.70E-02
155	GO:0006782: protoporphyrinogen IX biosynthetic process	2.70E-02
156	GO:0006535: cysteine biosynthetic process from serine	2.70E-02
157	GO:0009641: shade avoidance	2.70E-02
158	GO:0006298: mismatch repair	2.70E-02
159	GO:0016441: posttranscriptional gene silencing	2.70E-02
160	GO:0006949: syncytium formation	2.70E-02
161	GO:0009627: systemic acquired resistance	2.80E-02
162	GO:0009089: lysine biosynthetic process via diaminopimelate	2.99E-02
163	GO:0009682: induced systemic resistance	2.99E-02
164	GO:0043085: positive regulation of catalytic activity	2.99E-02
165	GO:0009750: response to fructose	2.99E-02
166	GO:0048765: root hair cell differentiation	2.99E-02
167	GO:0006790: sulfur compound metabolic process	3.30E-02
168	GO:0005983: starch catabolic process	3.30E-02
169	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.30E-02
170	GO:0045037: protein import into chloroplast stroma	3.30E-02
171	GO:0010311: lateral root formation	3.44E-02
172	GO:0000160: phosphorelay signal transduction system	3.44E-02
173	GO:0010588: cotyledon vascular tissue pattern formation	3.61E-02
174	GO:0030048: actin filament-based movement	3.61E-02
175	GO:0010102: lateral root morphogenesis	3.61E-02
176	GO:0009691: cytokinin biosynthetic process	3.61E-02
177	GO:2000028: regulation of photoperiodism, flowering	3.61E-02
178	GO:0006094: gluconeogenesis	3.61E-02
179	GO:0048467: gynoecium development	3.93E-02
180	GO:0010207: photosystem II assembly	3.93E-02
181	GO:0009933: meristem structural organization	3.93E-02
182	GO:0010223: secondary shoot formation	3.93E-02
183	GO:0010540: basipetal auxin transport	3.93E-02
184	GO:0009266: response to temperature stimulus	3.93E-02
185	GO:0009825: multidimensional cell growth	4.27E-02
186	GO:0090351: seedling development	4.27E-02
187	GO:0046854: phosphatidylinositol phosphorylation	4.27E-02
188	GO:0000162: tryptophan biosynthetic process	4.61E-02
189	GO:0010025: wax biosynthetic process	4.61E-02
190	GO:0042753: positive regulation of circadian rhythm	4.61E-02
191	GO:0009833: plant-type primary cell wall biogenesis	4.61E-02
192	GO:0071555: cell wall organization	4.78E-02
193	GO:0019344: cysteine biosynthetic process	4.96E-02
194	GO:0030150: protein import into mitochondrial matrix	4.96E-02
195	GO:0006338: chromatin remodeling	4.96E-02
196	GO:0007010: cytoskeleton organization	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
3	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
4	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0004401: histidinol-phosphatase activity	0.00E+00
7	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
8	GO:0015267: channel activity	0.00E+00
9	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
10	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
11	GO:0008805: carbon-monoxide oxygenase activity	3.06E-05
12	GO:0017118: lipoyltransferase activity	3.06E-05
13	GO:0003723: RNA binding	4.84E-05
14	GO:0001872: (1->3)-beta-D-glucan binding	1.98E-04
15	GO:0004519: endonuclease activity	4.04E-04
16	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	8.58E-04
17	GO:0005227: calcium activated cation channel activity	8.58E-04
18	GO:0042834: peptidoglycan binding	8.58E-04
19	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	8.58E-04
20	GO:0004831: tyrosine-tRNA ligase activity	8.58E-04
21	GO:0005290: L-histidine transmembrane transporter activity	8.58E-04
22	GO:0008395: steroid hydroxylase activity	8.58E-04
23	GO:0042586: peptide deformylase activity	8.58E-04
24	GO:0052381: tRNA dimethylallyltransferase activity	8.58E-04
25	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	8.58E-04
26	GO:0010347: L-galactose-1-phosphate phosphatase activity	8.58E-04
27	GO:0004047: aminomethyltransferase activity	1.86E-03
28	GO:0052832: inositol monophosphate 3-phosphatase activity	1.86E-03
29	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.86E-03
30	GO:0008934: inositol monophosphate 1-phosphatase activity	1.86E-03
31	GO:0008493: tetracycline transporter activity	1.86E-03
32	GO:0019156: isoamylase activity	1.86E-03
33	GO:0052833: inositol monophosphate 4-phosphatase activity	1.86E-03
34	GO:0000064: L-ornithine transmembrane transporter activity	1.86E-03
35	GO:0004826: phenylalanine-tRNA ligase activity	1.86E-03
36	GO:0004412: homoserine dehydrogenase activity	1.86E-03
37	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.86E-03
38	GO:0050736: O-malonyltransferase activity	1.86E-03
39	GO:0009884: cytokinin receptor activity	1.86E-03
40	GO:0050017: L-3-cyanoalanine synthase activity	1.86E-03
41	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.86E-03
42	GO:0043425: bHLH transcription factor binding	1.86E-03
43	GO:0016415: octanoyltransferase activity	1.86E-03
44	GO:0004805: trehalose-phosphatase activity	2.89E-03
45	GO:0043621: protein self-association	2.97E-03
46	GO:0045548: phenylalanine ammonia-lyase activity	3.08E-03
47	GO:0003913: DNA photolyase activity	3.08E-03
48	GO:0004148: dihydrolipoyl dehydrogenase activity	3.08E-03
49	GO:0005034: osmosensor activity	3.08E-03
50	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	3.08E-03
51	GO:0016707: gibberellin 3-beta-dioxygenase activity	3.08E-03
52	GO:0015266: protein channel activity	4.38E-03
53	GO:0015189: L-lysine transmembrane transporter activity	4.50E-03
54	GO:0004072: aspartate kinase activity	4.50E-03
55	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	4.50E-03
56	GO:0043047: single-stranded telomeric DNA binding	4.50E-03
57	GO:0015181: arginine transmembrane transporter activity	4.50E-03
58	GO:0017172: cysteine dioxygenase activity	4.50E-03
59	GO:0052656: L-isoleucine transaminase activity	4.50E-03
60	GO:0052654: L-leucine transaminase activity	4.50E-03
61	GO:0080031: methyl salicylate esterase activity	4.50E-03
62	GO:0052655: L-valine transaminase activity	4.50E-03
63	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	6.09E-03
64	GO:0010328: auxin influx transmembrane transporter activity	6.09E-03
65	GO:0004084: branched-chain-amino-acid transaminase activity	6.09E-03
66	GO:0019199: transmembrane receptor protein kinase activity	6.09E-03
67	GO:0004845: uracil phosphoribosyltransferase activity	6.09E-03
68	GO:0010011: auxin binding	6.09E-03
69	GO:0031418: L-ascorbic acid binding	6.90E-03
70	GO:0005345: purine nucleobase transmembrane transporter activity	7.63E-03
71	GO:0005471: ATP:ADP antiporter activity	7.84E-03
72	GO:0008725: DNA-3-methyladenine glycosylase activity	7.84E-03
73	GO:0080030: methyl indole-3-acetate esterase activity	9.75E-03
74	GO:0004332: fructose-bisphosphate aldolase activity	9.75E-03
75	GO:0004709: MAP kinase kinase kinase activity	9.75E-03
76	GO:0004556: alpha-amylase activity	9.75E-03
77	GO:2001070: starch binding	9.75E-03
78	GO:0030983: mismatched DNA binding	9.75E-03
79	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.18E-02
80	GO:0004849: uridine kinase activity	1.18E-02
81	GO:0016832: aldehyde-lyase activity	1.18E-02
82	GO:0004656: procollagen-proline 4-dioxygenase activity	1.18E-02
83	GO:0019900: kinase binding	1.18E-02
84	GO:0004124: cysteine synthase activity	1.18E-02
85	GO:0042162: telomeric DNA binding	1.40E-02
86	GO:0009881: photoreceptor activity	1.40E-02
87	GO:0003724: RNA helicase activity	1.88E-02
88	GO:0051015: actin filament binding	1.97E-02
89	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.02E-02
90	GO:0015171: amino acid transmembrane transporter activity	2.05E-02
91	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.14E-02
92	GO:0005200: structural constituent of cytoskeleton	2.23E-02
93	GO:0008047: enzyme activator activity	2.70E-02
94	GO:0004673: protein histidine kinase activity	2.70E-02
95	GO:0003779: actin binding	2.71E-02
96	GO:0015035: protein disulfide oxidoreductase activity	2.92E-02
97	GO:0030247: polysaccharide binding	2.95E-02
98	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.99E-02
99	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.27E-02
100	GO:0000049: tRNA binding	3.30E-02
101	GO:0005096: GTPase activator activity	3.44E-02
102	GO:0009982: pseudouridine synthase activity	3.61E-02
103	GO:0015095: magnesium ion transmembrane transporter activity	3.61E-02
104	GO:0000155: phosphorelay sensor kinase activity	3.61E-02
105	GO:0003774: motor activity	3.93E-02
106	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.93E-02
107	GO:0008266: poly(U) RNA binding	3.93E-02
108	GO:0003746: translation elongation factor activity	4.14E-02
109	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.14E-02
110	GO:0008061: chitin binding	4.27E-02
111	GO:0003712: transcription cofactor activity	4.27E-02
112	GO:0008146: sulfotransferase activity	4.27E-02
113	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.61E-02
114	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.61E-02
115	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.61E-02
116	GO:0004857: enzyme inhibitor activity	4.96E-02
117	GO:0008134: transcription factor binding	4.96E-02
118	GO:0051536: iron-sulfur cluster binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0035452: extrinsic component of plastid membrane	0.00E+00
4	GO:0009507: chloroplast	4.03E-07
5	GO:0009986: cell surface	1.14E-03
6	GO:0009707: chloroplast outer membrane	1.23E-03
7	GO:0009513: etioplast	1.86E-03
8	GO:0009569: chloroplast starch grain	1.86E-03
9	GO:0031357: integral component of chloroplast inner membrane	1.86E-03
10	GO:0005697: telomerase holoenzyme complex	1.86E-03
11	GO:0009509: chromoplast	3.08E-03
12	GO:0030139: endocytic vesicle	3.08E-03
13	GO:0032585: multivesicular body membrane	4.50E-03
14	GO:0032432: actin filament bundle	4.50E-03
15	GO:0009331: glycerol-3-phosphate dehydrogenase complex	4.50E-03
16	GO:0030529: intracellular ribonucleoprotein complex	4.63E-03
17	GO:0046658: anchored component of plasma membrane	7.54E-03
18	GO:0015629: actin cytoskeleton	1.01E-02
19	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.10E-02
20	GO:0042807: central vacuole	1.40E-02
21	GO:0009570: chloroplast stroma	1.40E-02
22	GO:0005886: plasma membrane	1.58E-02
23	GO:0031305: integral component of mitochondrial inner membrane	1.64E-02
24	GO:0009501: amyloplast	1.64E-02
25	GO:0009941: chloroplast envelope	1.65E-02
26	GO:0000326: protein storage vacuole	1.88E-02
27	GO:0000784: nuclear chromosome, telomeric region	1.88E-02
28	GO:0010494: cytoplasmic stress granule	2.14E-02
29	GO:0005743: mitochondrial inner membrane	2.48E-02
30	GO:0016459: myosin complex	2.70E-02
31	GO:0005884: actin filament	2.99E-02
32	GO:0009574: preprophase band	3.61E-02
33	GO:0005578: proteinaceous extracellular matrix	3.61E-02
34	GO:0030095: chloroplast photosystem II	3.93E-02
35	GO:0005874: microtubule	4.12E-02
36	GO:0031969: chloroplast membrane	4.32E-02
37	GO:0005875: microtubule associated complex	4.61E-02
38	GO:0005759: mitochondrial matrix	4.92E-02