co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G11945

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090706: specification of plant organ position	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0006114: glycerol biosynthetic process	0.00E+00
4	GO:0000372: Group I intron splicing	0.00E+00
5	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
6	GO:0032206: positive regulation of telomere maintenance	0.00E+00
7	GO:0006399: tRNA metabolic process	0.00E+00
8	GO:2000505: regulation of energy homeostasis	0.00E+00
9	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
10	GO:0010158: abaxial cell fate specification	3.35E-07
11	GO:2001141: regulation of RNA biosynthetic process	1.60E-05
12	GO:1902183: regulation of shoot apical meristem development	4.73E-05
13	GO:0006353: DNA-templated transcription, termination	1.64E-04
14	GO:0010080: regulation of floral meristem growth	2.00E-04
15	GO:0043087: regulation of GTPase activity	2.00E-04
16	GO:0006436: tryptophanyl-tRNA aminoacylation	2.00E-04
17	GO:0048363: mucilage pectin metabolic process	2.00E-04
18	GO:0010450: inflorescence meristem growth	2.00E-04
19	GO:0071482: cellular response to light stimulus	2.04E-04
20	GO:2000024: regulation of leaf development	2.49E-04
21	GO:0000373: Group II intron splicing	2.49E-04
22	GO:0006352: DNA-templated transcription, initiation	4.04E-04
23	GO:0048255: mRNA stabilization	4.48E-04
24	GO:0071668: plant-type cell wall assembly	4.48E-04
25	GO:0001736: establishment of planar polarity	4.48E-04
26	GO:0045037: protein import into chloroplast stroma	4.63E-04
27	GO:0010582: floral meristem determinacy	4.63E-04
28	GO:0006094: gluconeogenesis	5.25E-04
29	GO:0010207: photosystem II assembly	5.92E-04
30	GO:0010022: meristem determinacy	7.29E-04
31	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.29E-04
32	GO:0051604: protein maturation	7.29E-04
33	GO:0006696: ergosterol biosynthetic process	7.29E-04
34	GO:0045165: cell fate commitment	7.29E-04
35	GO:0009944: polarity specification of adaxial/abaxial axis	8.13E-04
36	GO:0042989: sequestering of actin monomers	1.04E-03
37	GO:1901332: negative regulation of lateral root development	1.04E-03
38	GO:0051513: regulation of monopolar cell growth	1.04E-03
39	GO:0007231: osmosensory signaling pathway	1.04E-03
40	GO:0051639: actin filament network formation	1.04E-03
41	GO:0010239: chloroplast mRNA processing	1.04E-03
42	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.16E-03
43	GO:0033500: carbohydrate homeostasis	1.38E-03
44	GO:0051781: positive regulation of cell division	1.38E-03
45	GO:0051764: actin crosslink formation	1.38E-03
46	GO:0006096: glycolytic process	1.39E-03
47	GO:0010154: fruit development	1.58E-03
48	GO:0009958: positive gravitropism	1.58E-03
49	GO:0080110: sporopollenin biosynthetic process	1.76E-03
50	GO:0030041: actin filament polymerization	1.76E-03
51	GO:0045038: protein import into chloroplast thylakoid membrane	1.76E-03
52	GO:0016123: xanthophyll biosynthetic process	1.76E-03
53	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.17E-03
54	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.17E-03
55	GO:0006555: methionine metabolic process	2.17E-03
56	GO:0009828: plant-type cell wall loosening	2.35E-03
57	GO:1901259: chloroplast rRNA processing	2.60E-03
58	GO:0042372: phylloquinone biosynthetic process	2.60E-03
59	GO:0010050: vegetative phase change	3.06E-03
60	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.06E-03
61	GO:0051510: regulation of unidimensional cell growth	3.06E-03
62	GO:0042255: ribosome assembly	3.55E-03
63	GO:0009850: auxin metabolic process	3.55E-03
64	GO:0048564: photosystem I assembly	3.55E-03
65	GO:0010311: lateral root formation	3.83E-03
66	GO:0009657: plastid organization	4.06E-03
67	GO:0032544: plastid translation	4.06E-03
68	GO:0010093: specification of floral organ identity	4.06E-03
69	GO:0006098: pentose-phosphate shunt	4.60E-03
70	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.60E-03
71	GO:0010206: photosystem II repair	4.60E-03
72	GO:0009734: auxin-activated signaling pathway	4.87E-03
73	GO:0000723: telomere maintenance	5.15E-03
74	GO:0035999: tetrahydrofolate interconversion	5.15E-03
75	GO:0009086: methionine biosynthetic process	5.15E-03
76	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.15E-03
77	GO:0042761: very long-chain fatty acid biosynthetic process	5.15E-03
78	GO:0006779: porphyrin-containing compound biosynthetic process	5.15E-03
79	GO:0006782: protoporphyrinogen IX biosynthetic process	5.74E-03
80	GO:0006535: cysteine biosynthetic process from serine	5.74E-03
81	GO:0048829: root cap development	5.74E-03
82	GO:0006949: syncytium formation	5.74E-03
83	GO:0009658: chloroplast organization	6.10E-03
84	GO:0006816: calcium ion transport	6.34E-03
85	GO:0006415: translational termination	6.34E-03
86	GO:0048765: root hair cell differentiation	6.34E-03
87	GO:0009733: response to auxin	7.09E-03
88	GO:0009664: plant-type cell wall organization	7.46E-03
89	GO:0009725: response to hormone	7.61E-03
90	GO:0009933: meristem structural organization	8.28E-03
91	GO:0090351: seedling development	8.97E-03
92	GO:0070588: calcium ion transmembrane transport	8.97E-03
93	GO:0010025: wax biosynthetic process	9.68E-03
94	GO:0048316: seed development	9.79E-03
95	GO:0045892: negative regulation of transcription, DNA-templated	1.03E-02
96	GO:0007010: cytoskeleton organization	1.04E-02
97	GO:0051017: actin filament bundle assembly	1.04E-02
98	GO:0019344: cysteine biosynthetic process	1.04E-02
99	GO:0006418: tRNA aminoacylation for protein translation	1.12E-02
100	GO:0003333: amino acid transmembrane transport	1.19E-02
101	GO:0010431: seed maturation	1.19E-02
102	GO:0035428: hexose transmembrane transport	1.27E-02
103	GO:0006730: one-carbon metabolic process	1.27E-02
104	GO:0006284: base-excision repair	1.43E-02
105	GO:0019722: calcium-mediated signaling	1.43E-02
106	GO:0010584: pollen exine formation	1.43E-02
107	GO:0016117: carotenoid biosynthetic process	1.52E-02
108	GO:0000271: polysaccharide biosynthetic process	1.60E-02
109	GO:0008033: tRNA processing	1.60E-02
110	GO:0034220: ion transmembrane transport	1.60E-02
111	GO:0045489: pectin biosynthetic process	1.69E-02
112	GO:0048868: pollen tube development	1.69E-02
113	GO:0046323: glucose import	1.69E-02
114	GO:0045490: pectin catabolic process	1.98E-02
115	GO:0032502: developmental process	2.06E-02
116	GO:0006914: autophagy	2.25E-02
117	GO:0007267: cell-cell signaling	2.35E-02
118	GO:0009793: embryo development ending in seed dormancy	2.46E-02
119	GO:0009911: positive regulation of flower development	2.55E-02
120	GO:0001666: response to hypoxia	2.55E-02
121	GO:0010027: thylakoid membrane organization	2.55E-02
122	GO:0016126: sterol biosynthetic process	2.55E-02
123	GO:0015995: chlorophyll biosynthetic process	2.87E-02
124	GO:0009826: unidimensional cell growth	2.95E-02
125	GO:0016311: dephosphorylation	2.98E-02
126	GO:0009817: defense response to fungus, incompatible interaction	3.09E-02
127	GO:0048481: plant ovule development	3.09E-02
128	GO:0018298: protein-chromophore linkage	3.09E-02
129	GO:0048527: lateral root development	3.42E-02
130	GO:0006865: amino acid transport	3.54E-02
131	GO:0016051: carbohydrate biosynthetic process	3.65E-02
132	GO:0009637: response to blue light	3.65E-02
133	GO:0080167: response to karrikin	3.80E-02
134	GO:0006839: mitochondrial transport	4.01E-02
135	GO:0010114: response to red light	4.37E-02
136	GO:0009926: auxin polar transport	4.37E-02
137	GO:0009744: response to sucrose	4.37E-02
138	GO:0009965: leaf morphogenesis	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0050613: delta14-sterol reductase activity	0.00E+00
4	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
5	GO:0005048: signal sequence binding	0.00E+00
6	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
7	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
8	GO:0016987: sigma factor activity	2.94E-05
9	GO:0001053: plastid sigma factor activity	2.94E-05
10	GO:0051996: squalene synthase activity	2.00E-04
11	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	2.00E-04
12	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	2.00E-04
13	GO:0004830: tryptophan-tRNA ligase activity	2.00E-04
14	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	2.00E-04
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	2.00E-04
16	GO:0004802: transketolase activity	4.48E-04
17	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.48E-04
18	GO:0050017: L-3-cyanoalanine synthase activity	4.48E-04
19	GO:0003913: DNA photolyase activity	7.29E-04
20	GO:0004557: alpha-galactosidase activity	7.29E-04
21	GO:0052692: raffinose alpha-galactosidase activity	7.29E-04
22	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.04E-03
23	GO:0043047: single-stranded telomeric DNA binding	1.04E-03
24	GO:0016149: translation release factor activity, codon specific	1.04E-03
25	GO:0001872: (1->3)-beta-D-glucan binding	1.04E-03
26	GO:0030570: pectate lyase activity	1.16E-03
27	GO:0010328: auxin influx transmembrane transporter activity	1.38E-03
28	GO:0010011: auxin binding	1.38E-03
29	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.38E-03
30	GO:0003785: actin monomer binding	1.76E-03
31	GO:0008725: DNA-3-methyladenine glycosylase activity	1.76E-03
32	GO:0004332: fructose-bisphosphate aldolase activity	2.17E-03
33	GO:0004017: adenylate kinase activity	2.60E-03
34	GO:0004124: cysteine synthase activity	2.60E-03
35	GO:0042162: telomeric DNA binding	3.06E-03
36	GO:0009881: photoreceptor activity	3.06E-03
37	GO:0008236: serine-type peptidase activity	3.47E-03
38	GO:0043022: ribosome binding	3.55E-03
39	GO:0008312: 7S RNA binding	3.55E-03
40	GO:0003747: translation release factor activity	4.60E-03
41	GO:0030955: potassium ion binding	5.15E-03
42	GO:0004743: pyruvate kinase activity	5.15E-03
43	GO:0003723: RNA binding	6.08E-03
44	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.34E-03
45	GO:0031072: heat shock protein binding	7.61E-03
46	GO:0005262: calcium channel activity	7.61E-03
47	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.01E-03
48	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.28E-03
49	GO:0005528: FK506 binding	1.04E-02
50	GO:0051087: chaperone binding	1.12E-02
51	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.27E-02
52	GO:0019843: rRNA binding	1.43E-02
53	GO:0003727: single-stranded RNA binding	1.43E-02
54	GO:0004812: aminoacyl-tRNA ligase activity	1.52E-02
55	GO:0016829: lyase activity	1.55E-02
56	GO:0008536: Ran GTPase binding	1.69E-02
57	GO:0008565: protein transporter activity	1.72E-02
58	GO:0010181: FMN binding	1.78E-02
59	GO:0005355: glucose transmembrane transporter activity	1.78E-02
60	GO:0050662: coenzyme binding	1.78E-02
61	GO:0004872: receptor activity	1.87E-02
62	GO:0004518: nuclease activity	2.06E-02
63	GO:0051015: actin filament binding	2.16E-02
64	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.35E-02
65	GO:0015250: water channel activity	2.55E-02
66	GO:0030247: polysaccharide binding	2.87E-02
67	GO:0004721: phosphoprotein phosphatase activity	2.87E-02
68	GO:0016491: oxidoreductase activity	3.01E-02
69	GO:0005096: GTPase activator activity	3.20E-02
70	GO:0003746: translation elongation factor activity	3.65E-02
71	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.83E-02
72	GO:0004185: serine-type carboxypeptidase activity	4.37E-02
73	GO:0043621: protein self-association	4.62E-02
74	GO:0035091: phosphatidylinositol binding	4.62E-02
75	GO:0004871: signal transducer activity	4.75E-02
76	GO:0015293: symporter activity	4.75E-02
77	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.25E-18
2	GO:0009570: chloroplast stroma	4.02E-07
3	GO:0009535: chloroplast thylakoid membrane	9.94E-06
4	GO:0005697: telomerase holoenzyme complex	4.48E-04
5	GO:0080085: signal recognition particle, chloroplast targeting	4.48E-04
6	GO:0009941: chloroplast envelope	5.83E-04
7	GO:0032432: actin filament bundle	1.04E-03
8	GO:0009526: plastid envelope	1.38E-03
9	GO:0030663: COPI-coated vesicle membrane	1.38E-03
10	GO:0055035: plastid thylakoid membrane	1.76E-03
11	GO:0009579: thylakoid	2.30E-03
12	GO:0030529: intracellular ribonucleoprotein complex	2.80E-03
13	GO:0042807: central vacuole	3.06E-03
14	GO:0009986: cell surface	3.06E-03
15	GO:0031225: anchored component of membrane	3.67E-03
16	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.06E-03
17	GO:0000326: protein storage vacuole	4.06E-03
18	GO:0000784: nuclear chromosome, telomeric region	4.06E-03
19	GO:0031977: thylakoid lumen	5.48E-03
20	GO:0030125: clathrin vesicle coat	5.74E-03
21	GO:0005884: actin filament	6.34E-03
22	GO:0000311: plastid large ribosomal subunit	6.96E-03
23	GO:0005938: cell cortex	7.61E-03
24	GO:0009574: preprophase band	7.61E-03
25	GO:0005578: proteinaceous extracellular matrix	7.61E-03
26	GO:0030176: integral component of endoplasmic reticulum membrane	8.97E-03
27	GO:0042651: thylakoid membrane	1.12E-02
28	GO:0009706: chloroplast inner membrane	1.14E-02
29	GO:0009532: plastid stroma	1.19E-02
30	GO:0015629: actin cytoskeleton	1.35E-02
31	GO:0010287: plastoglobule	1.36E-02
32	GO:0009543: chloroplast thylakoid lumen	1.43E-02
33	GO:0005623: cell	1.47E-02
34	GO:0031965: nuclear membrane	1.87E-02
35	GO:0046658: anchored component of plasma membrane	2.62E-02
36	GO:0009505: plant-type cell wall	2.80E-02
37	GO:0015934: large ribosomal subunit	3.42E-02