co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G11630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006223: uracil salvage	0.00E+00
2	GO:0042254: ribosome biogenesis	8.98E-07
3	GO:0006412: translation	9.00E-07
4	GO:0042026: protein refolding	6.19E-06
5	GO:0015995: chlorophyll biosynthetic process	1.21E-05
6	GO:0006783: heme biosynthetic process	1.88E-05
7	GO:0006782: protoporphyrinogen IX biosynthetic process	2.82E-05
8	GO:0006457: protein folding	3.09E-05
9	GO:0010270: photosystem II oxygen evolving complex assembly	9.09E-05
10	GO:0061077: chaperone-mediated protein folding	9.79E-05
11	GO:0007005: mitochondrion organization	1.08E-04
12	GO:0009735: response to cytokinin	1.74E-04
13	GO:0051085: chaperone mediated protein folding requiring cofactor	2.33E-04
14	GO:0006241: CTP biosynthetic process	2.33E-04
15	GO:0006165: nucleoside diphosphate phosphorylation	2.33E-04
16	GO:0006228: UTP biosynthetic process	2.33E-04
17	GO:0006183: GTP biosynthetic process	3.14E-04
18	GO:0044206: UMP salvage	3.14E-04
19	GO:0043097: pyrimidine nucleoside salvage	4.01E-04
20	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	4.92E-04
21	GO:0006014: D-ribose metabolic process	4.92E-04
22	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.92E-04
23	GO:0006828: manganese ion transport	4.92E-04
24	GO:0006206: pyrimidine nucleobase metabolic process	4.92E-04
25	GO:0006458: 'de novo' protein folding	5.88E-04
26	GO:0030091: protein repair	7.90E-04
27	GO:0000105: histidine biosynthetic process	7.90E-04
28	GO:0032544: plastid translation	8.97E-04
29	GO:0009089: lysine biosynthetic process via diaminopimelate	1.36E-03
30	GO:0006816: calcium ion transport	1.36E-03
31	GO:0006633: fatty acid biosynthetic process	1.86E-03
32	GO:0071732: cellular response to nitric oxide	1.89E-03
33	GO:0051017: actin filament bundle assembly	2.18E-03
34	GO:0009116: nucleoside metabolic process	2.18E-03
35	GO:0000027: ribosomal large subunit assembly	2.18E-03
36	GO:0043622: cortical microtubule organization	2.33E-03
37	GO:0016114: terpenoid biosynthetic process	2.48E-03
38	GO:0035428: hexose transmembrane transport	2.64E-03
39	GO:0009411: response to UV	2.80E-03
40	GO:0071369: cellular response to ethylene stimulus	2.80E-03
41	GO:0006012: galactose metabolic process	2.80E-03
42	GO:0000413: protein peptidyl-prolyl isomerization	3.30E-03
43	GO:0046323: glucose import	3.47E-03
44	GO:0019252: starch biosynthetic process	3.82E-03
45	GO:0000302: response to reactive oxygen species	4.00E-03
46	GO:0032502: developmental process	4.19E-03
47	GO:0071281: cellular response to iron ion	4.37E-03
48	GO:0009627: systemic acquired resistance	5.55E-03
49	GO:0008219: cell death	6.18E-03
50	GO:0016051: carbohydrate biosynthetic process	7.28E-03
51	GO:0034599: cellular response to oxidative stress	7.51E-03
52	GO:0042542: response to hydrogen peroxide	8.44E-03
53	GO:0009585: red, far-red light phototransduction	1.07E-02
54	GO:0006096: glycolytic process	1.20E-02
55	GO:0055114: oxidation-reduction process	1.35E-02
56	GO:0042744: hydrogen peroxide catabolic process	1.76E-02
57	GO:0009790: embryo development	1.80E-02
58	GO:0016036: cellular response to phosphate starvation	1.92E-02
59	GO:0009658: chloroplast organization	2.76E-02
60	GO:0046777: protein autophosphorylation	3.38E-02
61	GO:0006629: lipid metabolic process	4.25E-02
62	GO:0008152: metabolic process	4.55E-02
63	GO:0009793: embryo development ending in seed dormancy	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
4	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
5	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
8	GO:0019843: rRNA binding	1.94E-09
9	GO:0003735: structural constituent of ribosome	1.48E-08
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.52E-08
11	GO:0005528: FK506 binding	9.55E-07
12	GO:0044183: protein binding involved in protein folding	3.37E-05
13	GO:0003879: ATP phosphoribosyltransferase activity	3.64E-05
14	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.64E-05
15	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	9.09E-05
16	GO:0008967: phosphoglycolate phosphatase activity	9.09E-05
17	GO:0070402: NADPH binding	1.58E-04
18	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.58E-04
19	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.58E-04
20	GO:0004550: nucleoside diphosphate kinase activity	2.33E-04
21	GO:0004845: uracil phosphoribosyltransferase activity	3.14E-04
22	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	3.14E-04
23	GO:0004709: MAP kinase kinase kinase activity	4.92E-04
24	GO:0004130: cytochrome-c peroxidase activity	4.92E-04
25	GO:0004849: uridine kinase activity	5.88E-04
26	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.88E-04
27	GO:0004747: ribokinase activity	5.88E-04
28	GO:0004034: aldose 1-epimerase activity	7.90E-04
29	GO:0004033: aldo-keto reductase (NADP) activity	7.90E-04
30	GO:0008865: fructokinase activity	7.90E-04
31	GO:0047617: acyl-CoA hydrolase activity	1.12E-03
32	GO:0005384: manganese ion transmembrane transporter activity	1.12E-03
33	GO:0051082: unfolded protein binding	1.20E-03
34	GO:0015095: magnesium ion transmembrane transporter activity	1.62E-03
35	GO:0005355: glucose transmembrane transporter activity	3.64E-03
36	GO:0016853: isomerase activity	3.64E-03
37	GO:0051015: actin filament binding	4.37E-03
38	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.75E-03
39	GO:0008237: metallopeptidase activity	4.75E-03
40	GO:0004222: metalloendopeptidase activity	6.61E-03
41	GO:0015144: carbohydrate transmembrane transporter activity	1.83E-02
42	GO:0005351: sugar:proton symporter activity	1.99E-02
43	GO:0000287: magnesium ion binding	2.72E-02
44	GO:0004601: peroxidase activity	2.76E-02
45	GO:0016788: hydrolase activity, acting on ester bonds	2.80E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009507: chloroplast	7.68E-34
3	GO:0009570: chloroplast stroma	3.29E-32
4	GO:0009941: chloroplast envelope	1.89E-20
5	GO:0009579: thylakoid	4.12E-14
6	GO:0031977: thylakoid lumen	8.37E-11
7	GO:0009535: chloroplast thylakoid membrane	1.26E-09
8	GO:0009543: chloroplast thylakoid lumen	1.94E-09
9	GO:0005840: ribosome	2.19E-08
10	GO:0022626: cytosolic ribosome	1.88E-04
11	GO:0009534: chloroplast thylakoid	2.76E-04
12	GO:0031969: chloroplast membrane	4.52E-04
13	GO:0015935: small ribosomal subunit	2.48E-03
14	GO:0015629: actin cytoskeleton	2.80E-03
15	GO:0022625: cytosolic large ribosomal subunit	4.07E-03
16	GO:0048046: apoplast	4.32E-03
17	GO:0009536: plastid	4.69E-03
18	GO:0010319: stromule	4.75E-03
19	GO:0016020: membrane	5.38E-03
20	GO:0009707: chloroplast outer membrane	6.18E-03
21	GO:0015934: large ribosomal subunit	6.83E-03
22	GO:0005856: cytoskeleton	9.42E-03
23	GO:0005874: microtubule	3.14E-02