Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G11580

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0052386: cell wall thickening0.00E+00
2GO:0090400: stress-induced premature senescence0.00E+00
3GO:0080149: sucrose induced translational repression0.00E+00
4GO:0046680: response to DDT0.00E+00
5GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
6GO:1904250: positive regulation of age-related resistance0.00E+00
7GO:0010398: xylogalacturonan metabolic process0.00E+00
8GO:0016102: diterpenoid biosynthetic process0.00E+00
9GO:0072722: response to amitrole0.00E+00
10GO:0016192: vesicle-mediated transport1.31E-06
11GO:0055114: oxidation-reduction process9.76E-06
12GO:0080024: indolebutyric acid metabolic process2.51E-05
13GO:0045454: cell redox homeostasis1.59E-04
14GO:0009636: response to toxic substance1.89E-04
15GO:0046686: response to cadmium ion2.38E-04
16GO:0006102: isocitrate metabolic process2.41E-04
17GO:0010421: hydrogen peroxide-mediated programmed cell death2.57E-04
18GO:0000032: cell wall mannoprotein biosynthetic process2.57E-04
19GO:0006680: glucosylceramide catabolic process2.57E-04
20GO:0019478: D-amino acid catabolic process2.57E-04
21GO:0042964: thioredoxin reduction2.57E-04
22GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine5.68E-04
23GO:0080026: response to indolebutyric acid5.68E-04
24GO:0015709: thiosulfate transport5.68E-04
25GO:0071422: succinate transmembrane transport5.68E-04
26GO:0009805: coumarin biosynthetic process5.68E-04
27GO:0042853: L-alanine catabolic process5.68E-04
28GO:0055046: microgametogenesis7.47E-04
29GO:0006886: intracellular protein transport8.63E-04
30GO:0009062: fatty acid catabolic process9.22E-04
31GO:0006556: S-adenosylmethionine biosynthetic process9.22E-04
32GO:0010253: UDP-rhamnose biosynthetic process9.22E-04
33GO:0040009: regulation of growth rate9.22E-04
34GO:0072661: protein targeting to plasma membrane9.22E-04
35GO:0006517: protein deglycosylation9.22E-04
36GO:0032504: multicellular organism reproduction9.22E-04
37GO:0010476: gibberellin mediated signaling pathway9.22E-04
38GO:0010325: raffinose family oligosaccharide biosynthetic process9.22E-04
39GO:0010272: response to silver ion9.22E-04
40GO:0033591: response to L-ascorbic acid9.22E-04
41GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity9.22E-04
42GO:0006099: tricarboxylic acid cycle9.43E-04
43GO:0034976: response to endoplasmic reticulum stress1.04E-03
44GO:0001676: long-chain fatty acid metabolic process1.32E-03
45GO:0009298: GDP-mannose biosynthetic process1.32E-03
46GO:0015729: oxaloacetate transport1.32E-03
47GO:0015031: protein transport1.65E-03
48GO:0006621: protein retention in ER lumen1.76E-03
49GO:0010188: response to microbial phytotoxin1.76E-03
50GO:0015867: ATP transport1.76E-03
51GO:0009939: positive regulation of gibberellic acid mediated signaling pathway1.76E-03
52GO:1902584: positive regulation of response to water deprivation1.76E-03
53GO:0000304: response to singlet oxygen2.25E-03
54GO:0045927: positive regulation of growth2.25E-03
55GO:0071423: malate transmembrane transport2.25E-03
56GO:0098719: sodium ion import across plasma membrane2.25E-03
57GO:0046283: anthocyanin-containing compound metabolic process2.25E-03
58GO:0006564: L-serine biosynthetic process2.25E-03
59GO:0097428: protein maturation by iron-sulfur cluster transfer2.25E-03
60GO:0045489: pectin biosynthetic process2.26E-03
61GO:0006662: glycerol ether metabolic process2.26E-03
62GO:0009920: cell plate formation involved in plant-type cell wall biogenesis2.77E-03
63GO:0010315: auxin efflux2.77E-03
64GO:0035435: phosphate ion transmembrane transport2.77E-03
65GO:0006014: D-ribose metabolic process2.77E-03
66GO:0015866: ADP transport2.77E-03
67GO:0006555: methionine metabolic process2.77E-03
68GO:0006635: fatty acid beta-oxidation2.79E-03
69GO:0030643: cellular phosphate ion homeostasis3.33E-03
70GO:0009082: branched-chain amino acid biosynthetic process3.33E-03
71GO:0017148: negative regulation of translation3.33E-03
72GO:0034389: lipid particle organization3.33E-03
73GO:0009099: valine biosynthetic process3.33E-03
74GO:0048444: floral organ morphogenesis3.33E-03
75GO:0019509: L-methionine salvage from methylthioadenosine3.33E-03
76GO:0071669: plant-type cell wall organization or biogenesis3.93E-03
77GO:1900057: positive regulation of leaf senescence3.93E-03
78GO:0008272: sulfate transport3.93E-03
79GO:0050829: defense response to Gram-negative bacterium3.93E-03
80GO:1902074: response to salt3.93E-03
81GO:0080027: response to herbivore3.93E-03
82GO:0006744: ubiquinone biosynthetic process3.93E-03
83GO:0080186: developmental vegetative growth3.93E-03
84GO:0009627: systemic acquired resistance4.49E-03
85GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.56E-03
86GO:0043068: positive regulation of programmed cell death4.56E-03
87GO:0006491: N-glycan processing4.56E-03
88GO:0007155: cell adhesion4.56E-03
89GO:0019430: removal of superoxide radicals5.22E-03
90GO:0009657: plastid organization5.22E-03
91GO:0010417: glucuronoxylan biosynthetic process5.22E-03
92GO:0009097: isoleucine biosynthetic process5.22E-03
93GO:0030968: endoplasmic reticulum unfolded protein response5.22E-03
94GO:0009699: phenylpropanoid biosynthetic process5.22E-03
95GO:0006002: fructose 6-phosphate metabolic process5.22E-03
96GO:0015996: chlorophyll catabolic process5.22E-03
97GO:0010150: leaf senescence5.59E-03
98GO:0009407: toxin catabolic process5.79E-03
99GO:0006754: ATP biosynthetic process5.92E-03
100GO:0009056: catabolic process5.92E-03
101GO:0015780: nucleotide-sugar transport5.92E-03
102GO:0010043: response to zinc ion6.07E-03
103GO:0009098: leucine biosynthetic process6.64E-03
104GO:0051453: regulation of intracellular pH6.64E-03
105GO:0010205: photoinhibition6.64E-03
106GO:0034599: cellular response to oxidative stress6.96E-03
107GO:0000103: sulfate assimilation7.40E-03
108GO:0006032: chitin catabolic process7.40E-03
109GO:0009688: abscisic acid biosynthetic process7.40E-03
110GO:0051555: flavonol biosynthetic process7.40E-03
111GO:0006839: mitochondrial transport7.59E-03
112GO:0006415: translational termination8.19E-03
113GO:0000272: polysaccharide catabolic process8.19E-03
114GO:0042542: response to hydrogen peroxide8.25E-03
115GO:0009744: response to sucrose8.59E-03
116GO:0051707: response to other organism8.59E-03
117GO:0071365: cellular response to auxin stimulus9.00E-03
118GO:0009644: response to high light intensity9.29E-03
119GO:0010102: lateral root morphogenesis9.85E-03
120GO:0006807: nitrogen compound metabolic process9.85E-03
121GO:0009266: response to temperature stimulus1.07E-02
122GO:0007030: Golgi organization1.16E-02
123GO:0019853: L-ascorbic acid biosynthetic process1.16E-02
124GO:0090351: seedling development1.16E-02
125GO:0010053: root epidermal cell differentiation1.16E-02
126GO:0009225: nucleotide-sugar metabolic process1.16E-02
127GO:0007275: multicellular organism development1.25E-02
128GO:0000162: tryptophan biosynthetic process1.25E-02
129GO:0009651: response to salt stress1.35E-02
130GO:0006874: cellular calcium ion homeostasis1.45E-02
131GO:0008299: isoprenoid biosynthetic process1.45E-02
132GO:0006366: transcription from RNA polymerase II promoter1.55E-02
133GO:0016998: cell wall macromolecule catabolic process1.55E-02
134GO:0019915: lipid storage1.55E-02
135GO:0030433: ubiquitin-dependent ERAD pathway1.65E-02
136GO:0006730: one-carbon metabolic process1.65E-02
137GO:0019748: secondary metabolic process1.65E-02
138GO:0030245: cellulose catabolic process1.65E-02
139GO:0009693: ethylene biosynthetic process1.76E-02
140GO:0010227: floral organ abscission1.76E-02
141GO:0006457: protein folding1.79E-02
142GO:0042127: regulation of cell proliferation1.86E-02
143GO:0009561: megagametogenesis1.86E-02
144GO:0009306: protein secretion1.86E-02
145GO:0016117: carotenoid biosynthetic process1.97E-02
146GO:0010051: xylem and phloem pattern formation2.09E-02
147GO:0015991: ATP hydrolysis coupled proton transport2.09E-02
148GO:0042631: cellular response to water deprivation2.09E-02
149GO:0009058: biosynthetic process2.19E-02
150GO:0006814: sodium ion transport2.32E-02
151GO:0009646: response to absence of light2.32E-02
152GO:0006623: protein targeting to vacuole2.43E-02
153GO:0019252: starch biosynthetic process2.43E-02
154GO:0009851: auxin biosynthetic process2.43E-02
155GO:0010193: response to ozone2.56E-02
156GO:0016032: viral process2.68E-02
157GO:0030163: protein catabolic process2.80E-02
158GO:0071281: cellular response to iron ion2.80E-02
159GO:1901657: glycosyl compound metabolic process2.80E-02
160GO:0045490: pectin catabolic process2.87E-02
161GO:0010252: auxin homeostasis2.93E-02
162GO:0006464: cellular protein modification process2.93E-02
163GO:0009567: double fertilization forming a zygote and endosperm2.93E-02
164GO:0071805: potassium ion transmembrane transport3.06E-02
165GO:0001666: response to hypoxia3.32E-02
166GO:0009615: response to virus3.32E-02
167GO:0009414: response to water deprivation3.33E-02
168GO:0009617: response to bacterium3.42E-02
169GO:0010468: regulation of gene expression3.42E-02
170GO:0010029: regulation of seed germination3.46E-02
171GO:0006979: response to oxidative stress3.49E-02
172GO:0006906: vesicle fusion3.59E-02
173GO:0048573: photoperiodism, flowering3.73E-02
174GO:0006888: ER to Golgi vesicle-mediated transport3.73E-02
175GO:0016311: dephosphorylation3.87E-02
176GO:0016049: cell growth3.87E-02
177GO:0009733: response to auxin4.08E-02
178GO:0010311: lateral root formation4.16E-02
179GO:0048767: root hair elongation4.16E-02
180GO:0006499: N-terminal protein myristoylation4.30E-02
181GO:0048527: lateral root development4.45E-02
182GO:0007568: aging4.45E-02
183GO:0045087: innate immune response4.75E-02
184GO:0009860: pollen tube growth4.75E-02
185GO:0016051: carbohydrate biosynthetic process4.75E-02
RankGO TermAdjusted P value
1GO:0070577: lysine-acetylated histone binding0.00E+00
2GO:0070401: NADP+ binding0.00E+00
3GO:0080013: (E,E)-geranyllinalool synthase activity0.00E+00
4GO:0005046: KDEL sequence binding0.00E+00
5GO:0061133: endopeptidase activator activity0.00E+00
6GO:0051499: D-aminoacyl-tRNA deacylase activity0.00E+00
7GO:0016504: peptidase activator activity0.00E+00
8GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
9GO:0016229: steroid dehydrogenase activity0.00E+00
10GO:0008320: protein transmembrane transporter activity3.56E-06
11GO:0004449: isocitrate dehydrogenase (NAD+) activity2.51E-05
12GO:0070628: proteasome binding4.54E-05
13GO:0004033: aldo-keto reductase (NADP) activity2.41E-04
14GO:0004791: thioredoxin-disulfide reductase activity2.41E-04
15GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity2.57E-04
16GO:0004476: mannose-6-phosphate isomerase activity2.57E-04
17GO:0004348: glucosylceramidase activity2.57E-04
18GO:0102293: pheophytinase b activity2.57E-04
19GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity2.57E-04
20GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.57E-04
21GO:0004425: indole-3-glycerol-phosphate synthase activity2.57E-04
22GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity5.68E-04
23GO:1990585: hydroxyproline O-arabinosyltransferase activity5.68E-04
24GO:0008805: carbon-monoxide oxygenase activity5.68E-04
25GO:0050377: UDP-glucose 4,6-dehydratase activity5.68E-04
26GO:1901677: phosphate transmembrane transporter activity5.68E-04
27GO:0015117: thiosulfate transmembrane transporter activity5.68E-04
28GO:0047746: chlorophyllase activity5.68E-04
29GO:0010331: gibberellin binding5.68E-04
30GO:0010297: heteropolysaccharide binding5.68E-04
31GO:0008460: dTDP-glucose 4,6-dehydratase activity5.68E-04
32GO:0004617: phosphoglycerate dehydrogenase activity5.68E-04
33GO:0010280: UDP-L-rhamnose synthase activity5.68E-04
34GO:0050347: trans-octaprenyltranstransferase activity5.68E-04
35GO:0005310: dicarboxylic acid transmembrane transporter activity9.22E-04
36GO:0003955: NAD(P)H dehydrogenase (quinone) activity9.22E-04
37GO:0015141: succinate transmembrane transporter activity9.22E-04
38GO:0004478: methionine adenosyltransferase activity9.22E-04
39GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity9.22E-04
40GO:0015131: oxaloacetate transmembrane transporter activity1.32E-03
41GO:0016149: translation release factor activity, codon specific1.32E-03
42GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.32E-03
43GO:0005460: UDP-glucose transmembrane transporter activity1.32E-03
44GO:0016656: monodehydroascorbate reductase (NADH) activity1.32E-03
45GO:0052656: L-isoleucine transaminase activity1.32E-03
46GO:0008106: alcohol dehydrogenase (NADP+) activity1.32E-03
47GO:0004165: dodecenoyl-CoA delta-isomerase activity1.32E-03
48GO:0052654: L-leucine transaminase activity1.32E-03
49GO:0017077: oxidative phosphorylation uncoupler activity1.32E-03
50GO:0052655: L-valine transaminase activity1.32E-03
51GO:0004084: branched-chain-amino-acid transaminase activity1.76E-03
52GO:0004031: aldehyde oxidase activity1.76E-03
53GO:0050302: indole-3-acetaldehyde oxidase activity1.76E-03
54GO:0009916: alternative oxidase activity1.76E-03
55GO:0004659: prenyltransferase activity1.76E-03
56GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.76E-03
57GO:0046923: ER retention sequence binding1.76E-03
58GO:0003756: protein disulfide isomerase activity1.80E-03
59GO:0047134: protein-disulfide reductase activity1.95E-03
60GO:0004040: amidase activity2.25E-03
61GO:0005459: UDP-galactose transmembrane transporter activity2.25E-03
62GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity2.77E-03
63GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity2.77E-03
64GO:0035252: UDP-xylosyltransferase activity2.77E-03
65GO:0015035: protein disulfide oxidoreductase activity2.89E-03
66GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.18E-03
67GO:0102391: decanoate--CoA ligase activity3.33E-03
68GO:0003950: NAD+ ADP-ribosyltransferase activity3.33E-03
69GO:0004747: ribokinase activity3.33E-03
70GO:0005347: ATP transmembrane transporter activity3.33E-03
71GO:0004656: procollagen-proline 4-dioxygenase activity3.33E-03
72GO:0015217: ADP transmembrane transporter activity3.33E-03
73GO:0003872: 6-phosphofructokinase activity3.93E-03
74GO:0015140: malate transmembrane transporter activity3.93E-03
75GO:0043295: glutathione binding3.93E-03
76GO:0004467: long-chain fatty acid-CoA ligase activity3.93E-03
77GO:0052747: sinapyl alcohol dehydrogenase activity4.56E-03
78GO:0008865: fructokinase activity4.56E-03
79GO:0004714: transmembrane receptor protein tyrosine kinase activity4.56E-03
80GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.92E-03
81GO:0003747: translation release factor activity5.92E-03
82GO:0009672: auxin:proton symporter activity6.64E-03
83GO:0003746: translation elongation factor activity6.65E-03
84GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors6.65E-03
85GO:0004568: chitinase activity7.40E-03
86GO:0015386: potassium:proton antiporter activity8.19E-03
87GO:0004161: dimethylallyltranstransferase activity8.19E-03
88GO:0004364: glutathione transferase activity8.25E-03
89GO:0045551: cinnamyl-alcohol dehydrogenase activity9.00E-03
90GO:0015116: sulfate transmembrane transporter activity9.00E-03
91GO:0010329: auxin efflux transmembrane transporter activity9.85E-03
92GO:0016887: ATPase activity9.86E-03
93GO:0008061: chitin binding1.16E-02
94GO:0004970: ionotropic glutamate receptor activity1.16E-02
95GO:0005217: intracellular ligand-gated ion channel activity1.16E-02
96GO:0004190: aspartic-type endopeptidase activity1.16E-02
97GO:0050660: flavin adenine dinucleotide binding1.17E-02
98GO:0031625: ubiquitin protein ligase binding1.29E-02
99GO:0001046: core promoter sequence-specific DNA binding1.35E-02
100GO:0051536: iron-sulfur cluster binding1.35E-02
101GO:0031418: L-ascorbic acid binding1.35E-02
102GO:0043130: ubiquitin binding1.35E-02
103GO:0010333: terpene synthase activity1.55E-02
104GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.65E-02
105GO:0008810: cellulase activity1.76E-02
106GO:0005102: receptor binding1.97E-02
107GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.13E-02
108GO:0009055: electron carrier activity2.29E-02
109GO:0030170: pyridoxal phosphate binding2.30E-02
110GO:0010181: FMN binding2.32E-02
111GO:0016853: isomerase activity2.32E-02
112GO:0004872: receptor activity2.43E-02
113GO:0015297: antiporter activity2.74E-02
114GO:0015385: sodium:proton antiporter activity2.80E-02
115GO:0016791: phosphatase activity2.93E-02
116GO:0016597: amino acid binding3.19E-02
117GO:0051213: dioxygenase activity3.32E-02
118GO:0005506: iron ion binding3.37E-02
119GO:0102483: scopolin beta-glucosidase activity3.73E-02
120GO:0004806: triglyceride lipase activity3.73E-02
121GO:0016798: hydrolase activity, acting on glycosyl bonds3.73E-02
122GO:0003824: catalytic activity3.95E-02
123GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.01E-02
124GO:0000287: magnesium ion binding4.34E-02
125GO:0004601: peroxidase activity4.42E-02
126GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.45E-02
127GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.45E-02
128GO:0003993: acid phosphatase activity4.90E-02
RankGO TermAdjusted P value
1GO:0046862: chromoplast membrane0.00E+00
2GO:0005789: endoplasmic reticulum membrane2.27E-08
3GO:0005783: endoplasmic reticulum6.37E-06
4GO:0005794: Golgi apparatus9.24E-06
5GO:0005801: cis-Golgi network1.45E-04
6GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane1.90E-04
7GO:0016021: integral component of membrane2.53E-04
8GO:0045252: oxoglutarate dehydrogenase complex2.57E-04
9GO:0031901: early endosome membrane3.60E-04
10GO:0032580: Golgi cisterna membrane3.76E-04
11GO:0005788: endoplasmic reticulum lumen5.09E-04
12GO:0030134: ER to Golgi transport vesicle5.68E-04
13GO:0005886: plasma membrane6.67E-04
14GO:0030130: clathrin coat of trans-Golgi network vesicle9.22E-04
15GO:0030132: clathrin coat of coated pit9.22E-04
16GO:0005945: 6-phosphofructokinase complex2.25E-03
17GO:0005768: endosome2.71E-03
18GO:0016592: mediator complex2.98E-03
19GO:0030173: integral component of Golgi membrane3.33E-03
20GO:0005829: cytosol3.90E-03
21GO:0009986: cell surface3.93E-03
22GO:0031982: vesicle4.56E-03
23GO:0005779: integral component of peroxisomal membrane5.22E-03
24GO:0005811: lipid particle5.22E-03
25GO:0005774: vacuolar membrane5.44E-03
26GO:0030665: clathrin-coated vesicle membrane6.64E-03
27GO:0017119: Golgi transport complex7.40E-03
28GO:0031902: late endosome membrane7.91E-03
29GO:0008541: proteasome regulatory particle, lid subcomplex8.19E-03
30GO:0005737: cytoplasm8.80E-03
31GO:0030176: integral component of endoplasmic reticulum membrane1.16E-02
32GO:0070469: respiratory chain1.45E-02
33GO:0005777: peroxisome1.49E-02
34GO:0005839: proteasome core complex1.55E-02
35GO:0016020: membrane1.71E-02
36GO:0005744: mitochondrial inner membrane presequence translocase complex1.86E-02
37GO:0009504: cell plate2.43E-02
38GO:0005802: trans-Golgi network2.45E-02
39GO:0071944: cell periphery2.80E-02
40GO:0005773: vacuole3.46E-02
41GO:0009707: chloroplast outer membrane4.01E-02
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Gene type



Gene DE type