co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G11110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0031222: arabinan catabolic process	0.00E+00
5	GO:0061157: mRNA destabilization	0.00E+00
6	GO:0046620: regulation of organ growth	3.04E-05
7	GO:0009733: response to auxin	1.84E-04
8	GO:0040008: regulation of growth	2.28E-04
9	GO:0046520: sphingoid biosynthetic process	5.18E-04
10	GO:0010480: microsporocyte differentiation	5.18E-04
11	GO:0015904: tetracycline transport	5.18E-04
12	GO:0034757: negative regulation of iron ion transport	5.18E-04
13	GO:0000025: maltose catabolic process	5.18E-04
14	GO:0006955: immune response	5.41E-04
15	GO:0000373: Group II intron splicing	9.82E-04
16	GO:1900871: chloroplast mRNA modification	1.11E-03
17	GO:0010271: regulation of chlorophyll catabolic process	1.11E-03
18	GO:0006432: phenylalanyl-tRNA aminoacylation	1.11E-03
19	GO:0071497: cellular response to freezing	1.11E-03
20	GO:1900033: negative regulation of trichome patterning	1.11E-03
21	GO:0080009: mRNA methylation	1.11E-03
22	GO:0009786: regulation of asymmetric cell division	1.11E-03
23	GO:0031648: protein destabilization	1.11E-03
24	GO:0006568: tryptophan metabolic process	1.11E-03
25	GO:1900865: chloroplast RNA modification	1.16E-03
26	GO:0009098: leucine biosynthetic process	1.16E-03
27	GO:0009734: auxin-activated signaling pathway	1.24E-03
28	GO:0080117: secondary growth	1.82E-03
29	GO:0071398: cellular response to fatty acid	1.82E-03
30	GO:0090506: axillary shoot meristem initiation	1.82E-03
31	GO:0033591: response to L-ascorbic acid	1.82E-03
32	GO:0006006: glucose metabolic process	2.03E-03
33	GO:1990019: protein storage vacuole organization	2.64E-03
34	GO:0010371: regulation of gibberellin biosynthetic process	2.64E-03
35	GO:0051513: regulation of monopolar cell growth	2.64E-03
36	GO:0009755: hormone-mediated signaling pathway	3.56E-03
37	GO:1901141: regulation of lignin biosynthetic process	3.56E-03
38	GO:0048629: trichome patterning	3.56E-03
39	GO:0042274: ribosomal small subunit biogenesis	3.56E-03
40	GO:0016998: cell wall macromolecule catabolic process	3.86E-03
41	GO:0009926: auxin polar transport	4.56E-03
42	GO:0045487: gibberellin catabolic process	4.57E-03
43	GO:0080110: sporopollenin biosynthetic process	4.57E-03
44	GO:0016131: brassinosteroid metabolic process	4.57E-03
45	GO:0048497: maintenance of floral organ identity	4.57E-03
46	GO:0010438: cellular response to sulfur starvation	4.57E-03
47	GO:0071215: cellular response to abscisic acid stimulus	4.62E-03
48	GO:0045892: negative regulation of transcription, DNA-templated	5.23E-03
49	GO:0016554: cytidine to uridine editing	5.66E-03
50	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.66E-03
51	GO:0009913: epidermal cell differentiation	5.66E-03
52	GO:1902456: regulation of stomatal opening	5.66E-03
53	GO:0048831: regulation of shoot system development	5.66E-03
54	GO:0003006: developmental process involved in reproduction	5.66E-03
55	GO:0010405: arabinogalactan protein metabolic process	5.66E-03
56	GO:0010358: leaf shaping	5.66E-03
57	GO:0010087: phloem or xylem histogenesis	5.90E-03
58	GO:0009741: response to brassinosteroid	6.36E-03
59	GO:0010268: brassinosteroid homeostasis	6.36E-03
60	GO:0031930: mitochondria-nucleus signaling pathway	6.83E-03
61	GO:0009082: branched-chain amino acid biosynthetic process	6.83E-03
62	GO:0048509: regulation of meristem development	6.83E-03
63	GO:0009099: valine biosynthetic process	6.83E-03
64	GO:0030488: tRNA methylation	6.83E-03
65	GO:0048437: floral organ development	8.09E-03
66	GO:0010098: suspensor development	8.09E-03
67	GO:0030497: fatty acid elongation	8.09E-03
68	GO:0032502: developmental process	8.41E-03
69	GO:0009819: drought recovery	9.42E-03
70	GO:0006402: mRNA catabolic process	9.42E-03
71	GO:0010439: regulation of glucosinolate biosynthetic process	9.42E-03
72	GO:0009690: cytokinin metabolic process	9.42E-03
73	GO:0009704: de-etiolation	9.42E-03
74	GO:2000070: regulation of response to water deprivation	9.42E-03
75	GO:0000105: histidine biosynthetic process	9.42E-03
76	GO:0009097: isoleucine biosynthetic process	1.08E-02
77	GO:0048507: meristem development	1.23E-02
78	GO:0051865: protein autoubiquitination	1.23E-02
79	GO:0009056: catabolic process	1.23E-02
80	GO:0009051: pentose-phosphate shunt, oxidative branch	1.23E-02
81	GO:0048573: photoperiodism, flowering	1.35E-02
82	GO:0010018: far-red light signaling pathway	1.38E-02
83	GO:0031425: chloroplast RNA processing	1.38E-02
84	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.44E-02
85	GO:0009299: mRNA transcription	1.55E-02
86	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.55E-02
87	GO:0048829: root cap development	1.55E-02
88	GO:0009641: shade avoidance	1.55E-02
89	GO:0000160: phosphorelay signal transduction system	1.57E-02
90	GO:0009773: photosynthetic electron transport in photosystem I	1.71E-02
91	GO:0009682: induced systemic resistance	1.71E-02
92	GO:0043085: positive regulation of catalytic activity	1.71E-02
93	GO:0048229: gametophyte development	1.71E-02
94	GO:0006865: amino acid transport	1.82E-02
95	GO:0005983: starch catabolic process	1.89E-02
96	GO:0010582: floral meristem determinacy	1.89E-02
97	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.89E-02
98	GO:0009867: jasmonic acid mediated signaling pathway	1.90E-02
99	GO:0009416: response to light stimulus	1.98E-02
100	GO:0010102: lateral root morphogenesis	2.07E-02
101	GO:0009691: cytokinin biosynthetic process	2.07E-02
102	GO:0010628: positive regulation of gene expression	2.07E-02
103	GO:2000028: regulation of photoperiodism, flowering	2.07E-02
104	GO:0010075: regulation of meristem growth	2.07E-02
105	GO:0009725: response to hormone	2.07E-02
106	GO:0009767: photosynthetic electron transport chain	2.07E-02
107	GO:0010588: cotyledon vascular tissue pattern formation	2.07E-02
108	GO:0010223: secondary shoot formation	2.25E-02
109	GO:0009934: regulation of meristem structural organization	2.25E-02
110	GO:0048467: gynoecium development	2.25E-02
111	GO:0006631: fatty acid metabolic process	2.26E-02
112	GO:0090351: seedling development	2.44E-02
113	GO:0042753: positive regulation of circadian rhythm	2.64E-02
114	GO:0019762: glucosinolate catabolic process	2.64E-02
115	GO:0000162: tryptophan biosynthetic process	2.64E-02
116	GO:0009636: response to toxic substance	2.76E-02
117	GO:0080147: root hair cell development	2.84E-02
118	GO:0051017: actin filament bundle assembly	2.84E-02
119	GO:0005992: trehalose biosynthetic process	2.84E-02
120	GO:0016114: terpenoid biosynthetic process	3.26E-02
121	GO:0010431: seed maturation	3.26E-02
122	GO:0009736: cytokinin-activated signaling pathway	3.31E-02
123	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.48E-02
124	GO:0009909: regulation of flower development	3.66E-02
125	GO:0009693: ethylene biosynthetic process	3.70E-02
126	GO:0009686: gibberellin biosynthetic process	3.70E-02
127	GO:0010082: regulation of root meristem growth	3.70E-02
128	GO:0001944: vasculature development	3.70E-02
129	GO:0009625: response to insect	3.70E-02
130	GO:0010584: pollen exine formation	3.93E-02
131	GO:0048316: seed development	4.03E-02
132	GO:0070417: cellular response to cold	4.16E-02
133	GO:0080022: primary root development	4.40E-02
134	GO:0008033: tRNA processing	4.40E-02
135	GO:0010118: stomatal movement	4.40E-02
136	GO:0048653: anther development	4.40E-02
137	GO:0010305: leaf vascular tissue pattern formation	4.64E-02
138	GO:0006662: glycerol ether metabolic process	4.64E-02
139	GO:0010182: sugar mediated signaling pathway	4.64E-02
140	GO:0009960: endosperm development	4.64E-02
141	GO:0048544: recognition of pollen	4.88E-02
142	GO:0007018: microtubule-based movement	4.88E-02
143	GO:0009742: brassinosteroid mediated signaling pathway	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0015267: channel activity	0.00E+00
4	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
5	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
6	GO:0042834: peptidoglycan binding	0.00E+00
7	GO:0001872: (1->3)-beta-D-glucan binding	8.48E-05
8	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	5.18E-04
9	GO:0052381: tRNA dimethylallyltransferase activity	5.18E-04
10	GO:0004134: 4-alpha-glucanotransferase activity	5.18E-04
11	GO:0008395: steroid hydroxylase activity	5.18E-04
12	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.18E-04
13	GO:0010012: steroid 22-alpha hydroxylase activity	5.18E-04
14	GO:0000170: sphingosine hydroxylase activity	5.18E-04
15	GO:0050139: nicotinate-N-glucosyltransferase activity	5.18E-04
16	GO:0005227: calcium activated cation channel activity	5.18E-04
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	5.18E-04
18	GO:0008805: carbon-monoxide oxygenase activity	1.11E-03
19	GO:0042284: sphingolipid delta-4 desaturase activity	1.11E-03
20	GO:0008493: tetracycline transporter activity	1.11E-03
21	GO:0004826: phenylalanine-tRNA ligase activity	1.11E-03
22	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.11E-03
23	GO:0050736: O-malonyltransferase activity	1.11E-03
24	GO:0009884: cytokinin receptor activity	1.11E-03
25	GO:0017118: lipoyltransferase activity	1.11E-03
26	GO:0003852: 2-isopropylmalate synthase activity	1.11E-03
27	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.11E-03
28	GO:0043425: bHLH transcription factor binding	1.11E-03
29	GO:0010296: prenylcysteine methylesterase activity	1.11E-03
30	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.11E-03
31	GO:0005034: osmosensor activity	1.82E-03
32	GO:0052656: L-isoleucine transaminase activity	2.64E-03
33	GO:0052654: L-leucine transaminase activity	2.64E-03
34	GO:0052655: L-valine transaminase activity	2.64E-03
35	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.64E-03
36	GO:0004084: branched-chain-amino-acid transaminase activity	3.56E-03
37	GO:0019199: transmembrane receptor protein kinase activity	3.56E-03
38	GO:0046556: alpha-L-arabinofuranosidase activity	3.56E-03
39	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.56E-03
40	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.56E-03
41	GO:0033612: receptor serine/threonine kinase binding	3.86E-03
42	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.57E-03
43	GO:0004523: RNA-DNA hybrid ribonuclease activity	4.57E-03
44	GO:0000293: ferric-chelate reductase activity	5.66E-03
45	GO:0080030: methyl indole-3-acetate esterase activity	5.66E-03
46	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.66E-03
47	GO:0004709: MAP kinase kinase kinase activity	5.66E-03
48	GO:0003723: RNA binding	6.67E-03
49	GO:0016832: aldehyde-lyase activity	6.83E-03
50	GO:0019900: kinase binding	6.83E-03
51	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.83E-03
52	GO:0004518: nuclease activity	8.41E-03
53	GO:0008173: RNA methyltransferase activity	1.08E-02
54	GO:0015035: protein disulfide oxidoreductase activity	1.09E-02
55	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.23E-02
56	GO:0030247: polysaccharide binding	1.35E-02
57	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.45E-02
58	GO:0004673: protein histidine kinase activity	1.55E-02
59	GO:0004805: trehalose-phosphatase activity	1.55E-02
60	GO:0030234: enzyme regulator activity	1.55E-02
61	GO:0008047: enzyme activator activity	1.55E-02
62	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.73E-02
63	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.86E-02
64	GO:0000049: tRNA binding	1.89E-02
65	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.90E-02
66	GO:0004871: signal transducer activity	1.92E-02
67	GO:0000155: phosphorelay sensor kinase activity	2.07E-02
68	GO:0008146: sulfotransferase activity	2.44E-02
69	GO:0003712: transcription cofactor activity	2.44E-02
70	GO:0043621: protein self-association	2.66E-02
71	GO:0009055: electron carrier activity	2.72E-02
72	GO:0031418: L-ascorbic acid binding	2.84E-02
73	GO:0005345: purine nucleobase transmembrane transporter activity	3.05E-02
74	GO:0043424: protein histidine kinase binding	3.05E-02
75	GO:0003964: RNA-directed DNA polymerase activity	3.26E-02
76	GO:0010333: terpene synthase activity	3.26E-02
77	GO:0015171: amino acid transmembrane transporter activity	3.66E-02
78	GO:0003777: microtubule motor activity	3.66E-02
79	GO:0016788: hydrolase activity, acting on ester bonds	3.72E-02
80	GO:0003727: single-stranded RNA binding	3.93E-02
81	GO:0008514: organic anion transmembrane transporter activity	3.93E-02
82	GO:0047134: protein-disulfide reductase activity	4.16E-02
83	GO:0016874: ligase activity	4.42E-02
84	GO:0005199: structural constituent of cell wall	4.64E-02
85	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.64E-02
86	GO:0050662: coenzyme binding	4.88E-02
87	GO:0004791: thioredoxin-disulfide reductase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0030139: endocytic vesicle	1.82E-03
3	GO:0046658: anchored component of plasma membrane	1.92E-03
4	GO:0032585: multivesicular body membrane	2.64E-03
5	GO:0009654: photosystem II oxygen evolving complex	3.51E-03
6	GO:0009544: chloroplast ATP synthase complex	3.56E-03
7	GO:0015629: actin cytoskeleton	4.62E-03
8	GO:0019898: extrinsic component of membrane	7.35E-03
9	GO:0009986: cell surface	8.09E-03
10	GO:0009501: amyloplast	9.42E-03
11	GO:0010494: cytoplasmic stress granule	1.23E-02
12	GO:0009707: chloroplast outer membrane	1.50E-02
13	GO:0031225: anchored component of membrane	1.55E-02
14	GO:0005578: proteinaceous extracellular matrix	2.07E-02
15	GO:0030095: chloroplast photosystem II	2.25E-02
16	GO:0005875: microtubule associated complex	2.64E-02
17	GO:0009507: chloroplast	2.86E-02
18	GO:0005871: kinesin complex	4.16E-02