Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G10840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046471: phosphatidylglycerol metabolic process0.00E+00
2GO:0009661: chromoplast organization0.00E+00
3GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
4GO:0071474: cellular hyperosmotic response0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:0090279: regulation of calcium ion import0.00E+00
7GO:0033494: ferulate metabolic process0.00E+00
8GO:0009715: chalcone biosynthetic process0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0042821: pyridoxal biosynthetic process0.00E+00
11GO:0009773: photosynthetic electron transport in photosystem I1.01E-08
12GO:0015979: photosynthesis4.58E-06
13GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.40E-05
14GO:0015995: chlorophyll biosynthetic process8.33E-05
15GO:0006810: transport1.13E-04
16GO:0010218: response to far red light1.20E-04
17GO:0009768: photosynthesis, light harvesting in photosystem I1.33E-04
18GO:0009637: response to blue light1.54E-04
19GO:0009854: oxidative photosynthetic carbon pathway1.90E-04
20GO:0010114: response to red light2.38E-04
21GO:0043953: protein transport by the Tat complex3.07E-04
22GO:0000481: maturation of 5S rRNA3.07E-04
23GO:0071277: cellular response to calcium ion3.07E-04
24GO:0042371: vitamin K biosynthetic process3.07E-04
25GO:0065002: intracellular protein transmembrane transport3.07E-04
26GO:0071461: cellular response to redox state3.07E-04
27GO:0080093: regulation of photorespiration3.07E-04
28GO:0031998: regulation of fatty acid beta-oxidation3.07E-04
29GO:0034337: RNA folding3.07E-04
30GO:0000476: maturation of 4.5S rRNA3.07E-04
31GO:0009443: pyridoxal 5'-phosphate salvage3.07E-04
32GO:0000967: rRNA 5'-end processing3.07E-04
33GO:0046467: membrane lipid biosynthetic process3.07E-04
34GO:0015671: oxygen transport3.07E-04
35GO:0019252: starch biosynthetic process3.71E-04
36GO:0009657: plastid organization3.84E-04
37GO:0071482: cellular response to light stimulus3.84E-04
38GO:0006098: pentose-phosphate shunt4.63E-04
39GO:0090333: regulation of stomatal closure4.63E-04
40GO:0005982: starch metabolic process5.47E-04
41GO:0034755: iron ion transmembrane transport6.71E-04
42GO:0071457: cellular response to ozone6.71E-04
43GO:1904143: positive regulation of carotenoid biosynthetic process6.71E-04
44GO:0051262: protein tetramerization6.71E-04
45GO:0034470: ncRNA processing6.71E-04
46GO:0009629: response to gravity6.71E-04
47GO:0080005: photosystem stoichiometry adjustment6.71E-04
48GO:0080029: cellular response to boron-containing substance levels6.71E-04
49GO:0010541: acropetal auxin transport6.71E-04
50GO:0019684: photosynthesis, light reaction7.36E-04
51GO:0043085: positive regulation of catalytic activity7.36E-04
52GO:0018298: protein-chromophore linkage9.09E-04
53GO:0006094: gluconeogenesis9.50E-04
54GO:0009767: photosynthetic electron transport chain9.50E-04
55GO:0010207: photosystem II assembly1.07E-03
56GO:0010143: cutin biosynthetic process1.07E-03
57GO:0010160: formation of animal organ boundary1.09E-03
58GO:0005977: glycogen metabolic process1.09E-03
59GO:0006954: inflammatory response1.09E-03
60GO:0090391: granum assembly1.09E-03
61GO:0006636: unsaturated fatty acid biosynthetic process1.33E-03
62GO:0055114: oxidation-reduction process1.52E-03
63GO:0071786: endoplasmic reticulum tubular network organization1.56E-03
64GO:2001141: regulation of RNA biosynthetic process1.56E-03
65GO:0046713: borate transport1.56E-03
66GO:0071484: cellular response to light intensity1.56E-03
67GO:0009152: purine ribonucleotide biosynthetic process1.56E-03
68GO:0046653: tetrahydrofolate metabolic process1.56E-03
69GO:0009052: pentose-phosphate shunt, non-oxidative branch1.56E-03
70GO:0010731: protein glutathionylation1.56E-03
71GO:0043481: anthocyanin accumulation in tissues in response to UV light1.56E-03
72GO:0010021: amylopectin biosynthetic process2.09E-03
73GO:0010037: response to carbon dioxide2.09E-03
74GO:0015976: carbon utilization2.09E-03
75GO:0071486: cellular response to high light intensity2.09E-03
76GO:0015689: molybdate ion transport2.09E-03
77GO:0010107: potassium ion import2.09E-03
78GO:2000122: negative regulation of stomatal complex development2.09E-03
79GO:0009765: photosynthesis, light harvesting2.09E-03
80GO:0015994: chlorophyll metabolic process2.09E-03
81GO:0006546: glycine catabolic process2.09E-03
82GO:0016120: carotene biosynthetic process2.67E-03
83GO:0006564: L-serine biosynthetic process2.67E-03
84GO:0010236: plastoquinone biosynthetic process2.67E-03
85GO:0000278: mitotic cell cycle2.67E-03
86GO:0006097: glyoxylate cycle2.67E-03
87GO:0006465: signal peptide processing2.67E-03
88GO:0071493: cellular response to UV-B2.67E-03
89GO:0098719: sodium ion import across plasma membrane2.67E-03
90GO:0009958: positive gravitropism2.91E-03
91GO:0009658: chloroplast organization2.98E-03
92GO:0009228: thiamine biosynthetic process3.30E-03
93GO:0050665: hydrogen peroxide biosynthetic process3.30E-03
94GO:0042549: photosystem II stabilization3.30E-03
95GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.30E-03
96GO:0060918: auxin transport3.30E-03
97GO:0010190: cytochrome b6f complex assembly3.30E-03
98GO:0032502: developmental process3.83E-03
99GO:1901259: chloroplast rRNA processing3.97E-03
100GO:0010189: vitamin E biosynthetic process3.97E-03
101GO:0010019: chloroplast-nucleus signaling pathway3.97E-03
102GO:0009955: adaxial/abaxial pattern specification3.97E-03
103GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity3.97E-03
104GO:0005975: carbohydrate metabolic process4.28E-03
105GO:0009769: photosynthesis, light harvesting in photosystem II4.68E-03
106GO:0009395: phospholipid catabolic process4.68E-03
107GO:0009772: photosynthetic electron transport in photosystem II4.68E-03
108GO:1900056: negative regulation of leaf senescence4.68E-03
109GO:0009645: response to low light intensity stimulus4.68E-03
110GO:0010078: maintenance of root meristem identity5.44E-03
111GO:0009704: de-etiolation5.44E-03
112GO:0032508: DNA duplex unwinding5.44E-03
113GO:0042255: ribosome assembly5.44E-03
114GO:0006353: DNA-templated transcription, termination5.44E-03
115GO:0050821: protein stabilization5.44E-03
116GO:0031540: regulation of anthocyanin biosynthetic process5.44E-03
117GO:0055075: potassium ion homeostasis5.44E-03
118GO:0052543: callose deposition in cell wall5.44E-03
119GO:0016559: peroxisome fission5.44E-03
120GO:0009642: response to light intensity5.44E-03
121GO:0010204: defense response signaling pathway, resistance gene-independent6.23E-03
122GO:0032544: plastid translation6.23E-03
123GO:0043562: cellular response to nitrogen levels6.23E-03
124GO:0017004: cytochrome complex assembly6.23E-03
125GO:0019430: removal of superoxide radicals6.23E-03
126GO:0019432: triglyceride biosynthetic process7.07E-03
127GO:0006783: heme biosynthetic process7.07E-03
128GO:0009821: alkaloid biosynthetic process7.07E-03
129GO:0048527: lateral root development7.83E-03
130GO:0051453: regulation of intracellular pH7.94E-03
131GO:0006779: porphyrin-containing compound biosynthetic process7.94E-03
132GO:0007346: regulation of mitotic cell cycle7.94E-03
133GO:0010380: regulation of chlorophyll biosynthetic process7.94E-03
134GO:0009853: photorespiration8.59E-03
135GO:0006949: syncytium formation8.84E-03
136GO:0006782: protoporphyrinogen IX biosynthetic process8.84E-03
137GO:0034599: cellular response to oxidative stress8.98E-03
138GO:0006879: cellular iron ion homeostasis9.79E-03
139GO:0006352: DNA-templated transcription, initiation9.79E-03
140GO:0009684: indoleacetic acid biosynthetic process9.79E-03
141GO:0009089: lysine biosynthetic process via diaminopimelate9.79E-03
142GO:0016024: CDP-diacylglycerol biosynthetic process1.08E-02
143GO:0008361: regulation of cell size1.08E-02
144GO:0009926: auxin polar transport1.11E-02
145GO:0006108: malate metabolic process1.18E-02
146GO:0030048: actin filament-based movement1.18E-02
147GO:0010588: cotyledon vascular tissue pattern formation1.18E-02
148GO:0010540: basipetal auxin transport1.28E-02
149GO:0048467: gynoecium development1.28E-02
150GO:0010020: chloroplast fission1.28E-02
151GO:0042023: DNA endoreduplication1.50E-02
152GO:0009833: plant-type primary cell wall biogenesis1.50E-02
153GO:0010224: response to UV-B1.55E-02
154GO:0051603: proteolysis involved in cellular protein catabolic process1.55E-02
155GO:0009735: response to cytokinin1.56E-02
156GO:0007017: microtubule-based process1.74E-02
157GO:0006096: glycolytic process1.78E-02
158GO:0019915: lipid storage1.86E-02
159GO:0009269: response to desiccation1.86E-02
160GO:0016114: terpenoid biosynthetic process1.86E-02
161GO:0019748: secondary metabolic process1.98E-02
162GO:0030245: cellulose catabolic process1.98E-02
163GO:0030433: ubiquitin-dependent ERAD pathway1.98E-02
164GO:0009686: gibberellin biosynthetic process2.11E-02
165GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.11E-02
166GO:0009306: protein secretion2.24E-02
167GO:0048443: stamen development2.24E-02
168GO:0080022: primary root development2.50E-02
169GO:0042335: cuticle development2.50E-02
170GO:0010087: phloem or xylem histogenesis2.50E-02
171GO:0010118: stomatal movement2.50E-02
172GO:0042631: cellular response to water deprivation2.50E-02
173GO:0006662: glycerol ether metabolic process2.64E-02
174GO:0010268: brassinosteroid homeostasis2.64E-02
175GO:0006885: regulation of pH2.64E-02
176GO:0006520: cellular amino acid metabolic process2.64E-02
177GO:0071472: cellular response to salt stress2.64E-02
178GO:0015986: ATP synthesis coupled proton transport2.78E-02
179GO:0006814: sodium ion transport2.78E-02
180GO:0009058: biosynthetic process2.83E-02
181GO:0009851: auxin biosynthetic process2.92E-02
182GO:0048825: cotyledon development2.92E-02
183GO:0009791: post-embryonic development2.92E-02
184GO:0010193: response to ozone3.07E-02
185GO:0016132: brassinosteroid biosynthetic process3.07E-02
186GO:0071554: cell wall organization or biogenesis3.07E-02
187GO:1901657: glycosyl compound metabolic process3.36E-02
188GO:0009828: plant-type cell wall loosening3.52E-02
189GO:0009567: double fertilization forming a zygote and endosperm3.52E-02
190GO:0016125: sterol metabolic process3.52E-02
191GO:0009639: response to red or far red light3.52E-02
192GO:0045490: pectin catabolic process3.69E-02
193GO:0010027: thylakoid membrane organization3.98E-02
194GO:0009627: systemic acquired resistance4.31E-02
195GO:0042128: nitrate assimilation4.31E-02
196GO:0008380: RNA splicing4.40E-02
197GO:0016311: dephosphorylation4.64E-02
198GO:0030244: cellulose biosynthetic process4.81E-02
199GO:0009817: defense response to fungus, incompatible interaction4.81E-02
200GO:0009813: flavonoid biosynthetic process4.98E-02
RankGO TermAdjusted P value
1GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
2GO:0008465: glycerate dehydrogenase activity0.00E+00
3GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
4GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
5GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
6GO:0016210: naringenin-chalcone synthase activity0.00E+00
7GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
8GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
9GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
10GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
11GO:0009011: starch synthase activity4.51E-07
12GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.10E-05
13GO:0031409: pigment binding9.85E-05
14GO:0004332: fructose-bisphosphate aldolase activity1.39E-04
15GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.90E-04
16GO:0015168: glycerol transmembrane transporter activity3.07E-04
17GO:0004328: formamidase activity3.07E-04
18GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.07E-04
19GO:0005344: oxygen transporter activity3.07E-04
20GO:0046906: tetrapyrrole binding3.07E-04
21GO:0005227: calcium activated cation channel activity3.07E-04
22GO:0051777: ent-kaurenoate oxidase activity3.07E-04
23GO:0008883: glutamyl-tRNA reductase activity6.71E-04
24GO:0047746: chlorophyllase activity6.71E-04
25GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity6.71E-04
26GO:0009977: proton motive force dependent protein transmembrane transporter activity6.71E-04
27GO:0004617: phosphoglycerate dehydrogenase activity6.71E-04
28GO:0004047: aminomethyltransferase activity6.71E-04
29GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity6.71E-04
30GO:0033201: alpha-1,4-glucan synthase activity6.71E-04
31GO:0004312: fatty acid synthase activity6.71E-04
32GO:0080097: L-tryptophan:pyruvate aminotransferase activity6.71E-04
33GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity6.71E-04
34GO:0019172: glyoxalase III activity6.71E-04
35GO:0019156: isoamylase activity6.71E-04
36GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.71E-04
37GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.71E-04
38GO:0016168: chlorophyll binding6.99E-04
39GO:0004751: ribose-5-phosphate isomerase activity1.09E-03
40GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.09E-03
41GO:0070402: NADPH binding1.09E-03
42GO:0008864: formyltetrahydrofolate deformylase activity1.09E-03
43GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.09E-03
44GO:0004373: glycogen (starch) synthase activity1.09E-03
45GO:0050734: hydroxycinnamoyltransferase activity1.09E-03
46GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.56E-03
47GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.56E-03
48GO:0016851: magnesium chelatase activity1.56E-03
49GO:0046715: borate transmembrane transporter activity1.56E-03
50GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.56E-03
51GO:0001872: (1->3)-beta-D-glucan binding1.56E-03
52GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.56E-03
53GO:0004185: serine-type carboxypeptidase activity1.68E-03
54GO:0015098: molybdate ion transmembrane transporter activity2.09E-03
55GO:0008891: glycolate oxidase activity2.09E-03
56GO:0015204: urea transmembrane transporter activity2.09E-03
57GO:0001053: plastid sigma factor activity2.09E-03
58GO:0004045: aminoacyl-tRNA hydrolase activity2.09E-03
59GO:0016987: sigma factor activity2.09E-03
60GO:0003727: single-stranded RNA binding2.31E-03
61GO:0016846: carbon-sulfur lyase activity2.67E-03
62GO:0016788: hydrolase activity, acting on ester bonds3.06E-03
63GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.30E-03
64GO:0004784: superoxide dismutase activity3.30E-03
65GO:0015081: sodium ion transmembrane transporter activity3.30E-03
66GO:0016615: malate dehydrogenase activity3.30E-03
67GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.30E-03
68GO:2001070: starch binding3.30E-03
69GO:0004556: alpha-amylase activity3.30E-03
70GO:0004462: lactoylglutathione lyase activity3.30E-03
71GO:0048038: quinone binding3.59E-03
72GO:0030060: L-malate dehydrogenase activity3.97E-03
73GO:0005261: cation channel activity3.97E-03
74GO:0019899: enzyme binding4.68E-03
75GO:0004033: aldo-keto reductase (NADP) activity5.44E-03
76GO:0008135: translation factor activity, RNA binding6.23E-03
77GO:0016844: strictosidine synthase activity7.94E-03
78GO:0005381: iron ion transmembrane transporter activity7.94E-03
79GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds8.19E-03
80GO:0008047: enzyme activator activity8.84E-03
81GO:0003993: acid phosphatase activity8.98E-03
82GO:0016491: oxidoreductase activity9.47E-03
83GO:0047372: acylglycerol lipase activity9.79E-03
84GO:0015386: potassium:proton antiporter activity9.79E-03
85GO:0008378: galactosyltransferase activity1.08E-02
86GO:0010329: auxin efflux transmembrane transporter activity1.18E-02
87GO:0004089: carbonate dehydratase activity1.18E-02
88GO:0004565: beta-galactosidase activity1.18E-02
89GO:0004022: alcohol dehydrogenase (NAD) activity1.18E-02
90GO:0051537: 2 iron, 2 sulfur cluster binding1.20E-02
91GO:0008266: poly(U) RNA binding1.28E-02
92GO:0003774: motor activity1.28E-02
93GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.28E-02
94GO:0051287: NAD binding1.35E-02
95GO:0043130: ubiquitin binding1.62E-02
96GO:0005528: FK506 binding1.62E-02
97GO:0030599: pectinesterase activity2.01E-02
98GO:0016760: cellulose synthase (UDP-forming) activity2.11E-02
99GO:0030570: pectate lyase activity2.11E-02
100GO:0008810: cellulase activity2.11E-02
101GO:0047134: protein-disulfide reductase activity2.37E-02
102GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.64E-02
103GO:0019843: rRNA binding2.68E-02
104GO:0010181: FMN binding2.78E-02
105GO:0004791: thioredoxin-disulfide reductase activity2.78E-02
106GO:0016853: isomerase activity2.78E-02
107GO:0003924: GTPase activity2.89E-02
108GO:0019901: protein kinase binding2.92E-02
109GO:0009055: electron carrier activity3.15E-02
110GO:0015385: sodium:proton antiporter activity3.36E-02
111GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.36E-02
112GO:0016791: phosphatase activity3.52E-02
113GO:0016759: cellulose synthase activity3.52E-02
114GO:0005200: structural constituent of cytoskeleton3.67E-02
115GO:0008483: transaminase activity3.67E-02
116GO:0016722: oxidoreductase activity, oxidizing metal ions3.67E-02
117GO:0016597: amino acid binding3.83E-02
118GO:0016413: O-acetyltransferase activity3.83E-02
119GO:0015250: water channel activity3.98E-02
120GO:0008289: lipid binding4.34E-02
121GO:0030247: polysaccharide binding4.48E-02
122GO:0102483: scopolin beta-glucosidase activity4.48E-02
123GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.64E-02
124GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.64E-02
125GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.68E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0009507: chloroplast5.03E-34
5GO:0009535: chloroplast thylakoid membrane3.47E-16
6GO:0009570: chloroplast stroma1.66E-10
7GO:0009534: chloroplast thylakoid3.02E-10
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.23E-09
9GO:0009941: chloroplast envelope1.63E-08
10GO:0009543: chloroplast thylakoid lumen6.27E-08
11GO:0009579: thylakoid3.19E-06
12GO:0009654: photosystem II oxygen evolving complex5.32E-06
13GO:0010287: plastoglobule1.37E-05
14GO:0033281: TAT protein transport complex1.52E-05
15GO:0009522: photosystem I2.23E-05
16GO:0030095: chloroplast photosystem II6.96E-05
17GO:0030076: light-harvesting complex8.31E-05
18GO:0031977: thylakoid lumen2.08E-04
19GO:0005787: signal peptidase complex3.07E-04
20GO:0031361: integral component of thylakoid membrane3.07E-04
21GO:0009523: photosystem II3.71E-04
22GO:0019898: extrinsic component of membrane3.71E-04
23GO:0043036: starch grain6.71E-04
24GO:0031969: chloroplast membrane9.30E-04
25GO:0010007: magnesium chelatase complex1.09E-03
26GO:0071782: endoplasmic reticulum tubular network1.56E-03
27GO:0048046: apoplast1.66E-03
28GO:0005777: peroxisome1.80E-03
29GO:0009517: PSII associated light-harvesting complex II2.09E-03
30GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.30E-03
31GO:0005618: cell wall5.43E-03
32GO:0009501: amyloplast5.44E-03
33GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.44E-03
34GO:0000307: cyclin-dependent protein kinase holoenzyme complex6.23E-03
35GO:0009539: photosystem II reaction center6.23E-03
36GO:0045298: tubulin complex7.07E-03
37GO:0005763: mitochondrial small ribosomal subunit7.07E-03
38GO:0016021: integral component of membrane8.16E-03
39GO:0016459: myosin complex8.84E-03
40GO:0032040: small-subunit processome1.08E-02
41GO:0005773: vacuole1.13E-02
42GO:0009508: plastid chromosome1.18E-02
43GO:0043234: protein complex1.50E-02
44GO:0042651: thylakoid membrane1.74E-02
45GO:0010319: stromule3.67E-02
46GO:0009295: nucleoid3.67E-02
47GO:0030529: intracellular ribonucleoprotein complex3.98E-02
48GO:0019005: SCF ubiquitin ligase complex4.81E-02
49GO:0009707: chloroplast outer membrane4.81E-02
50GO:0046658: anchored component of plasma membrane4.87E-02
<
Gene type



Gene DE type