co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G10640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035264: multicellular organism growth	0.00E+00
2	GO:0070212: protein poly-ADP-ribosylation	0.00E+00
3	GO:0032497: detection of lipopolysaccharide	0.00E+00
4	GO:0010200: response to chitin	2.07E-09
5	GO:0006952: defense response	4.27E-07
6	GO:0070588: calcium ion transmembrane transport	9.64E-07
7	GO:0009626: plant-type hypersensitive response	1.54E-06
8	GO:0000187: activation of MAPK activity	1.97E-05
9	GO:0042742: defense response to bacterium	2.94E-05
10	GO:0002237: response to molecule of bacterial origin	3.47E-05
11	GO:0045088: regulation of innate immune response	3.60E-05
12	GO:0009814: defense response, incompatible interaction	9.14E-05
13	GO:2000037: regulation of stomatal complex patterning	1.17E-04
14	GO:0046470: phosphatidylcholine metabolic process	1.54E-04
15	GO:0010365: positive regulation of ethylene biosynthetic process	2.25E-04
16	GO:0051938: L-glutamate import	2.25E-04
17	GO:0051245: negative regulation of cellular defense response	2.25E-04
18	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	2.25E-04
19	GO:0006481: C-terminal protein methylation	2.25E-04
20	GO:0010941: regulation of cell death	2.25E-04
21	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.25E-04
22	GO:0006643: membrane lipid metabolic process	2.25E-04
23	GO:0007229: integrin-mediated signaling pathway	2.25E-04
24	GO:0080157: regulation of plant-type cell wall organization or biogenesis	2.25E-04
25	GO:0050691: regulation of defense response to virus by host	2.25E-04
26	GO:1902065: response to L-glutamate	2.25E-04
27	GO:0015784: GDP-mannose transport	2.25E-04
28	GO:0051865: protein autoubiquitination	2.95E-04
29	GO:0043069: negative regulation of programmed cell death	4.12E-04
30	GO:0007064: mitotic sister chromatid cohesion	4.12E-04
31	GO:0046777: protein autophosphorylation	4.70E-04
32	GO:0002221: pattern recognition receptor signaling pathway	5.00E-04
33	GO:0043091: L-arginine import	5.00E-04
34	GO:0015802: basic amino acid transport	5.00E-04
35	GO:0008219: cell death	5.19E-04
36	GO:0006468: protein phosphorylation	5.68E-04
37	GO:0010229: inflorescence development	6.19E-04
38	GO:0015783: GDP-fucose transport	8.13E-04
39	GO:0048281: inflorescence morphogenesis	8.13E-04
40	GO:0010581: regulation of starch biosynthetic process	8.13E-04
41	GO:0002230: positive regulation of defense response to virus by host	8.13E-04
42	GO:0009062: fatty acid catabolic process	8.13E-04
43	GO:0051176: positive regulation of sulfur metabolic process	8.13E-04
44	GO:0046713: borate transport	1.16E-03
45	GO:0072334: UDP-galactose transmembrane transport	1.16E-03
46	GO:0002679: respiratory burst involved in defense response	1.16E-03
47	GO:0033014: tetrapyrrole biosynthetic process	1.16E-03
48	GO:0010306: rhamnogalacturonan II biosynthetic process	1.16E-03
49	GO:0006612: protein targeting to membrane	1.16E-03
50	GO:0015696: ammonium transport	1.16E-03
51	GO:0000165: MAPK cascade	1.21E-03
52	GO:0010227: floral organ abscission	1.36E-03
53	GO:0046345: abscisic acid catabolic process	1.54E-03
54	GO:0072488: ammonium transmembrane transport	1.54E-03
55	GO:0010363: regulation of plant-type hypersensitive response	1.54E-03
56	GO:0022622: root system development	1.54E-03
57	GO:2000038: regulation of stomatal complex development	1.54E-03
58	GO:0080142: regulation of salicylic acid biosynthetic process	1.54E-03
59	GO:0010225: response to UV-C	1.97E-03
60	GO:0032957: inositol trisphosphate metabolic process	1.97E-03
61	GO:0045487: gibberellin catabolic process	1.97E-03
62	GO:0009697: salicylic acid biosynthetic process	1.97E-03
63	GO:0010117: photoprotection	1.97E-03
64	GO:0080167: response to karrikin	2.07E-03
65	GO:0006979: response to oxidative stress	2.29E-03
66	GO:0002229: defense response to oomycetes	2.30E-03
67	GO:0009611: response to wounding	2.36E-03
68	GO:0046855: inositol phosphate dephosphorylation	2.43E-03
69	GO:1900425: negative regulation of defense response to bacterium	2.43E-03
70	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.91E-03
71	GO:0042372: phylloquinone biosynthetic process	2.91E-03
72	GO:0051607: defense response to virus	3.13E-03
73	GO:0010044: response to aluminum ion	3.43E-03
74	GO:0010161: red light signaling pathway	3.43E-03
75	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.43E-03
76	GO:0009816: defense response to bacterium, incompatible interaction	3.50E-03
77	GO:0009409: response to cold	4.10E-03
78	GO:0043562: cellular response to nitrogen levels	4.56E-03
79	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	5.01E-03
80	GO:0007166: cell surface receptor signaling pathway	5.15E-03
81	GO:0009051: pentose-phosphate shunt, oxidative branch	5.16E-03
82	GO:0090333: regulation of stomatal closure	5.16E-03
83	GO:0006783: heme biosynthetic process	5.16E-03
84	GO:0009617: response to bacterium	5.44E-03
85	GO:0045087: innate immune response	5.46E-03
86	GO:0010449: root meristem growth	5.79E-03
87	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.45E-03
88	GO:0006032: chitin catabolic process	6.45E-03
89	GO:0050832: defense response to fungus	6.78E-03
90	GO:0030148: sphingolipid biosynthetic process	7.13E-03
91	GO:0046856: phosphatidylinositol dephosphorylation	7.13E-03
92	GO:0000272: polysaccharide catabolic process	7.13E-03
93	GO:0000209: protein polyubiquitination	7.32E-03
94	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	7.84E-03
95	GO:0012501: programmed cell death	7.84E-03
96	GO:0009738: abscisic acid-activated signaling pathway	8.52E-03
97	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	8.53E-03
98	GO:0055046: microgametogenesis	8.57E-03
99	GO:0009785: blue light signaling pathway	8.57E-03
100	GO:0006006: glucose metabolic process	8.57E-03
101	GO:0007165: signal transduction	9.50E-03
102	GO:0009737: response to abscisic acid	9.93E-03
103	GO:0009969: xyloglucan biosynthetic process	1.01E-02
104	GO:0042343: indole glucosinolate metabolic process	1.01E-02
105	GO:0090351: seedling development	1.01E-02
106	GO:0009909: regulation of flower development	1.05E-02
107	GO:0048367: shoot system development	1.16E-02
108	GO:0009863: salicylic acid mediated signaling pathway	1.17E-02
109	GO:0045892: negative regulation of transcription, DNA-templated	1.28E-02
110	GO:0051260: protein homooligomerization	1.34E-02
111	GO:0098542: defense response to other organism	1.34E-02
112	GO:0048278: vesicle docking	1.34E-02
113	GO:0031408: oxylipin biosynthetic process	1.34E-02
114	GO:0003333: amino acid transmembrane transport	1.34E-02
115	GO:0016998: cell wall macromolecule catabolic process	1.34E-02
116	GO:0031348: negative regulation of defense response	1.43E-02
117	GO:0071456: cellular response to hypoxia	1.43E-02
118	GO:0010017: red or far-red light signaling pathway	1.43E-02
119	GO:0016226: iron-sulfur cluster assembly	1.43E-02
120	GO:0001944: vasculature development	1.53E-02
121	GO:0009686: gibberellin biosynthetic process	1.53E-02
122	GO:0016042: lipid catabolic process	1.58E-02
123	GO:0010584: pollen exine formation	1.62E-02
124	GO:0042147: retrograde transport, endosome to Golgi	1.71E-02
125	GO:0010118: stomatal movement	1.81E-02
126	GO:0042391: regulation of membrane potential	1.81E-02
127	GO:0000271: polysaccharide biosynthetic process	1.81E-02
128	GO:0045489: pectin biosynthetic process	1.91E-02
129	GO:0016567: protein ubiquitination	1.97E-02
130	GO:0061025: membrane fusion	2.01E-02
131	GO:0048544: recognition of pollen	2.01E-02
132	GO:0010193: response to ozone	2.22E-02
133	GO:0006891: intra-Golgi vesicle-mediated transport	2.22E-02
134	GO:0006635: fatty acid beta-oxidation	2.22E-02
135	GO:0016032: viral process	2.32E-02
136	GO:0009639: response to red or far red light	2.54E-02
137	GO:0010468: regulation of gene expression	2.80E-02
138	GO:0009615: response to virus	2.88E-02
139	GO:0009911: positive regulation of flower development	2.88E-02
140	GO:0001666: response to hypoxia	2.88E-02
141	GO:0009607: response to biotic stimulus	3.00E-02
142	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.00E-02
143	GO:0009627: systemic acquired resistance	3.12E-02
144	GO:0006906: vesicle fusion	3.12E-02
145	GO:0015995: chlorophyll biosynthetic process	3.24E-02
146	GO:0048573: photoperiodism, flowering	3.24E-02
147	GO:0016049: cell growth	3.36E-02
148	GO:0009817: defense response to fungus, incompatible interaction	3.48E-02
149	GO:0009832: plant-type cell wall biogenesis	3.61E-02
150	GO:0006499: N-terminal protein myristoylation	3.73E-02
151	GO:0009631: cold acclimation	3.86E-02
152	GO:0006970: response to osmotic stress	3.91E-02
153	GO:0009867: jasmonic acid mediated signaling pathway	4.12E-02
154	GO:0016051: carbohydrate biosynthetic process	4.12E-02
155	GO:0006887: exocytosis	4.66E-02
156	GO:0042542: response to hydrogen peroxide	4.79E-02
157	GO:0044550: secondary metabolite biosynthetic process	4.87E-02
158	GO:0051707: response to other organism	4.93E-02
159	GO:0009640: photomorphogenesis	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0005458: GDP-mannose transmembrane transporter activity	0.00E+00
2	GO:0005388: calcium-transporting ATPase activity	5.47E-07
3	GO:0016301: kinase activity	2.13E-05
4	GO:0004708: MAP kinase kinase activity	1.97E-04
5	GO:0031127: alpha-(1,2)-fucosyltransferase activity	2.25E-04
6	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	2.25E-04
7	GO:0008809: carnitine racemase activity	2.25E-04
8	GO:0015085: calcium ion transmembrane transporter activity	2.25E-04
9	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.25E-04
10	GO:0004325: ferrochelatase activity	2.25E-04
11	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.25E-04
12	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	2.25E-04
13	GO:0008909: isochorismate synthase activity	2.25E-04
14	GO:0004630: phospholipase D activity	2.44E-04
15	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.44E-04
16	GO:0005524: ATP binding	2.55E-04
17	GO:0005516: calmodulin binding	3.21E-04
18	GO:0043531: ADP binding	3.32E-04
19	GO:0004674: protein serine/threonine kinase activity	3.81E-04
20	GO:0080041: ADP-ribose pyrophosphohydrolase activity	5.00E-04
21	GO:0017110: nucleoside-diphosphatase activity	5.00E-04
22	GO:0045140: inositol phosphoceramide synthase activity	5.00E-04
23	GO:0005457: GDP-fucose transmembrane transporter activity	8.13E-04
24	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	8.13E-04
25	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.16E-03
26	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	1.16E-03
27	GO:0015189: L-lysine transmembrane transporter activity	1.16E-03
28	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.16E-03
29	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.16E-03
30	GO:0015181: arginine transmembrane transporter activity	1.16E-03
31	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.54E-03
32	GO:0005313: L-glutamate transmembrane transporter activity	1.54E-03
33	GO:0008234: cysteine-type peptidase activity	1.58E-03
34	GO:0005249: voltage-gated potassium channel activity	1.73E-03
35	GO:0005509: calcium ion binding	1.92E-03
36	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.97E-03
37	GO:0010294: abscisic acid glucosyltransferase activity	1.97E-03
38	GO:0005459: UDP-galactose transmembrane transporter activity	1.97E-03
39	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.97E-03
40	GO:0047631: ADP-ribose diphosphatase activity	1.97E-03
41	GO:0008519: ammonium transmembrane transporter activity	2.43E-03
42	GO:0004709: MAP kinase kinase kinase activity	2.43E-03
43	GO:0000210: NAD+ diphosphatase activity	2.43E-03
44	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.43E-03
45	GO:0035252: UDP-xylosyltransferase activity	2.43E-03
46	GO:0019900: kinase binding	2.91E-03
47	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.95E-03
48	GO:0004143: diacylglycerol kinase activity	3.43E-03
49	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	3.43E-03
50	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.43E-03
51	GO:0004620: phospholipase activity	3.43E-03
52	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.97E-03
53	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.98E-03
54	GO:0003951: NAD+ kinase activity	4.56E-03
55	GO:0008417: fucosyltransferase activity	5.16E-03
56	GO:0015174: basic amino acid transmembrane transporter activity	5.79E-03
57	GO:0004568: chitinase activity	6.45E-03
58	GO:0008047: enzyme activator activity	6.45E-03
59	GO:0008559: xenobiotic-transporting ATPase activity	7.13E-03
60	GO:0047372: acylglycerol lipase activity	7.13E-03
61	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	7.84E-03
62	GO:0015095: magnesium ion transmembrane transporter activity	8.57E-03
63	GO:0005262: calcium channel activity	8.57E-03
64	GO:0030552: cAMP binding	1.01E-02
65	GO:0030553: cGMP binding	1.01E-02
66	GO:0008061: chitin binding	1.01E-02
67	GO:0061630: ubiquitin protein ligase activity	1.06E-02
68	GO:0005216: ion channel activity	1.26E-02
69	GO:0033612: receptor serine/threonine kinase binding	1.34E-02
70	GO:0004842: ubiquitin-protein transferase activity	1.37E-02
71	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.43E-02
72	GO:0004672: protein kinase activity	1.52E-02
73	GO:0030551: cyclic nucleotide binding	1.81E-02
74	GO:0003713: transcription coactivator activity	1.91E-02
75	GO:0010181: FMN binding	2.01E-02
76	GO:0008270: zinc ion binding	2.07E-02
77	GO:0004197: cysteine-type endopeptidase activity	2.32E-02
78	GO:0016757: transferase activity, transferring glycosyl groups	2.42E-02
79	GO:0008375: acetylglucosaminyltransferase activity	3.12E-02
80	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.12E-02
81	GO:0004683: calmodulin-dependent protein kinase activity	3.24E-02
82	GO:0004721: phosphoprotein phosphatase activity	3.24E-02
83	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.36E-02
84	GO:0003682: chromatin binding	3.84E-02
85	GO:0000149: SNARE binding	4.39E-02
86	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.39E-02
87	GO:0050661: NADP binding	4.52E-02
88	GO:0030246: carbohydrate binding	4.82E-02
89	GO:0005484: SNAP receptor activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	6.38E-07
2	GO:0008076: voltage-gated potassium channel complex	1.16E-03
3	GO:0005887: integral component of plasma membrane	1.41E-03
4	GO:0016021: integral component of membrane	2.02E-03
5	GO:0030173: integral component of Golgi membrane	2.91E-03
6	GO:0030176: integral component of endoplasmic reticulum membrane	1.01E-02
7	GO:0043234: protein complex	1.09E-02
8	GO:0005769: early endosome	1.09E-02
9	GO:0012505: endomembrane system	1.32E-02
10	GO:0043231: intracellular membrane-bounded organelle	1.85E-02
11	GO:0032580: Golgi cisterna membrane	2.54E-02
12	GO:0000325: plant-type vacuole	3.86E-02
13	GO:0000139: Golgi membrane	4.01E-02
14	GO:0031201: SNARE complex	4.66E-02