co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G10520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009661: chromoplast organization	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
6	GO:0009773: photosynthetic electron transport in photosystem I	1.09E-11
7	GO:0015979: photosynthesis	3.61E-07
8	GO:0090391: granum assembly	6.53E-06
9	GO:0010207: photosystem II assembly	2.45E-05
10	GO:0010114: response to red light	7.37E-05
11	GO:0019544: arginine catabolic process to glutamate	1.93E-04
12	GO:0080093: regulation of photorespiration	1.93E-04
13	GO:0031998: regulation of fatty acid beta-oxidation	1.93E-04
14	GO:0071277: cellular response to calcium ion	1.93E-04
15	GO:0046467: membrane lipid biosynthetic process	1.93E-04
16	GO:0006098: pentose-phosphate shunt	2.36E-04
17	GO:0005982: starch metabolic process	2.82E-04
18	GO:0015995: chlorophyll biosynthetic process	3.43E-04
19	GO:0055114: oxidation-reduction process	3.95E-04
20	GO:1904143: positive regulation of carotenoid biosynthetic process	4.33E-04
21	GO:0080029: cellular response to boron-containing substance levels	4.33E-04
22	GO:0071457: cellular response to ozone	4.33E-04
23	GO:0010541: acropetal auxin transport	4.33E-04
24	GO:0010218: response to far red light	4.45E-04
25	GO:0006094: gluconeogenesis	5.01E-04
26	GO:0009637: response to blue light	5.32E-04
27	GO:0009853: photorespiration	5.32E-04
28	GO:0010143: cutin biosynthetic process	5.65E-04
29	GO:0006636: unsaturated fatty acid biosynthetic process	7.02E-04
30	GO:0010025: wax biosynthetic process	7.02E-04
31	GO:0005977: glycogen metabolic process	7.06E-04
32	GO:0010160: formation of animal organ boundary	7.06E-04
33	GO:0009768: photosynthesis, light harvesting in photosystem I	8.55E-04
34	GO:0006810: transport	9.06E-04
35	GO:0005975: carbohydrate metabolic process	9.73E-04
36	GO:0046713: borate transport	1.01E-03
37	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.01E-03
38	GO:0071484: cellular response to light intensity	1.01E-03
39	GO:0009152: purine ribonucleotide biosynthetic process	1.01E-03
40	GO:0046653: tetrahydrofolate metabolic process	1.01E-03
41	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.01E-03
42	GO:0010731: protein glutathionylation	1.01E-03
43	GO:0019748: secondary metabolic process	1.02E-03
44	GO:0006096: glycolytic process	1.30E-03
45	GO:0010021: amylopectin biosynthetic process	1.34E-03
46	GO:0010037: response to carbon dioxide	1.34E-03
47	GO:0015976: carbon utilization	1.34E-03
48	GO:0071486: cellular response to high light intensity	1.34E-03
49	GO:0015689: molybdate ion transport	1.34E-03
50	GO:0009765: photosynthesis, light harvesting	1.34E-03
51	GO:0045727: positive regulation of translation	1.34E-03
52	GO:0015994: chlorophyll metabolic process	1.34E-03
53	GO:2000122: negative regulation of stomatal complex development	1.34E-03
54	GO:0042631: cellular response to water deprivation	1.40E-03
55	GO:0006564: L-serine biosynthetic process	1.70E-03
56	GO:0006097: glyoxylate cycle	1.70E-03
57	GO:0006465: signal peptide processing	1.70E-03
58	GO:0071493: cellular response to UV-B	1.70E-03
59	GO:0016120: carotene biosynthetic process	1.70E-03
60	GO:0019252: starch biosynthetic process	1.73E-03
61	GO:0042549: photosystem II stabilization	2.10E-03
62	GO:0060918: auxin transport	2.10E-03
63	GO:1902456: regulation of stomatal opening	2.10E-03
64	GO:0010190: cytochrome b6f complex assembly	2.10E-03
65	GO:0010189: vitamin E biosynthetic process	2.52E-03
66	GO:0009854: oxidative photosynthetic carbon pathway	2.52E-03
67	GO:0009772: photosynthetic electron transport in photosystem II	2.96E-03
68	GO:0010196: nonphotochemical quenching	2.96E-03
69	GO:0009769: photosynthesis, light harvesting in photosystem II	2.96E-03
70	GO:1900057: positive regulation of leaf senescence	2.96E-03
71	GO:0009645: response to low light intensity stimulus	2.96E-03
72	GO:0009704: de-etiolation	3.43E-03
73	GO:0050821: protein stabilization	3.43E-03
74	GO:0052543: callose deposition in cell wall	3.43E-03
75	GO:0016559: peroxisome fission	3.43E-03
76	GO:0009642: response to light intensity	3.43E-03
77	GO:0018298: protein-chromophore linkage	3.47E-03
78	GO:0032544: plastid translation	3.93E-03
79	GO:0071482: cellular response to light stimulus	3.93E-03
80	GO:0019430: removal of superoxide radicals	3.93E-03
81	GO:0009657: plastid organization	3.93E-03
82	GO:0006783: heme biosynthetic process	4.44E-03
83	GO:0090333: regulation of stomatal closure	4.44E-03
84	GO:0034599: cellular response to oxidative stress	4.60E-03
85	GO:0006779: porphyrin-containing compound biosynthetic process	4.99E-03
86	GO:0006949: syncytium formation	5.55E-03
87	GO:0006782: protoporphyrinogen IX biosynthetic process	5.55E-03
88	GO:0000272: polysaccharide catabolic process	6.13E-03
89	GO:0018119: peptidyl-cysteine S-nitrosylation	6.13E-03
90	GO:0043085: positive regulation of catalytic activity	6.13E-03
91	GO:0008361: regulation of cell size	6.73E-03
92	GO:0006108: malate metabolic process	7.36E-03
93	GO:0006006: glucose metabolic process	7.36E-03
94	GO:0009767: photosynthetic electron transport chain	7.36E-03
95	GO:0030048: actin filament-based movement	7.36E-03
96	GO:0006364: rRNA processing	7.63E-03
97	GO:0010540: basipetal auxin transport	8.01E-03
98	GO:0009266: response to temperature stimulus	8.01E-03
99	GO:0010020: chloroplast fission	8.01E-03
100	GO:0019253: reductive pentose-phosphate cycle	8.01E-03
101	GO:0009833: plant-type primary cell wall biogenesis	9.35E-03
102	GO:0019762: glucosinolate catabolic process	9.35E-03
103	GO:0042545: cell wall modification	1.06E-02
104	GO:0006869: lipid transport	1.07E-02
105	GO:0016998: cell wall macromolecule catabolic process	1.15E-02
106	GO:0009269: response to desiccation	1.15E-02
107	GO:0030245: cellulose catabolic process	1.23E-02
108	GO:0030433: ubiquitin-dependent ERAD pathway	1.23E-02
109	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.31E-02
110	GO:0048443: stamen development	1.39E-02
111	GO:0010118: stomatal movement	1.55E-02
112	GO:0042335: cuticle development	1.55E-02
113	GO:0006662: glycerol ether metabolic process	1.63E-02
114	GO:0071472: cellular response to salt stress	1.63E-02
115	GO:0009958: positive gravitropism	1.63E-02
116	GO:0006520: cellular amino acid metabolic process	1.63E-02
117	GO:0015986: ATP synthesis coupled proton transport	1.72E-02
118	GO:0006633: fatty acid biosynthetic process	1.72E-02
119	GO:0045490: pectin catabolic process	1.89E-02
120	GO:0007623: circadian rhythm	1.89E-02
121	GO:0010193: response to ozone	1.90E-02
122	GO:0032502: developmental process	1.99E-02
123	GO:1901657: glycosyl compound metabolic process	2.08E-02
124	GO:0009828: plant-type cell wall loosening	2.18E-02
125	GO:0009639: response to red or far red light	2.18E-02
126	GO:0009735: response to cytokinin	2.28E-02
127	GO:0010027: thylakoid membrane organization	2.47E-02
128	GO:0009416: response to light stimulus	2.55E-02
129	GO:0042128: nitrate assimilation	2.67E-02
130	GO:0010411: xyloglucan metabolic process	2.77E-02
131	GO:0016311: dephosphorylation	2.88E-02
132	GO:0009409: response to cold	2.92E-02
133	GO:0030244: cellulose biosynthetic process	2.98E-02
134	GO:0010311: lateral root formation	3.09E-02
135	GO:0048527: lateral root development	3.31E-02
136	GO:0010119: regulation of stomatal movement	3.31E-02
137	GO:0080167: response to karrikin	3.62E-02
138	GO:0006099: tricarboxylic acid cycle	3.64E-02
139	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.74E-02
140	GO:0006631: fatty acid metabolic process	3.99E-02
141	GO:0009926: auxin polar transport	4.23E-02
142	GO:0009640: photomorphogenesis	4.23E-02
143	GO:0042546: cell wall biogenesis	4.35E-02
144	GO:0000209: protein polyubiquitination	4.35E-02
145	GO:0009644: response to high light intensity	4.47E-02
146	GO:0009636: response to toxic substance	4.59E-02
147	GO:0006855: drug transmembrane transport	4.71E-02
148	GO:0009664: plant-type cell wall organization	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0008465: glycerate dehydrogenase activity	0.00E+00
3	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
4	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
5	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
6	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
7	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
8	GO:0045550: geranylgeranyl reductase activity	0.00E+00
9	GO:0009011: starch synthase activity	2.77E-05
10	GO:0004332: fructose-bisphosphate aldolase activity	6.61E-05
11	GO:0015168: glycerol transmembrane transporter activity	1.93E-04
12	GO:0035671: enone reductase activity	1.93E-04
13	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.93E-04
14	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.93E-04
15	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.93E-04
16	GO:0008883: glutamyl-tRNA reductase activity	4.33E-04
17	GO:0047746: chlorophyllase activity	4.33E-04
18	GO:0042389: omega-3 fatty acid desaturase activity	4.33E-04
19	GO:0010297: heteropolysaccharide binding	4.33E-04
20	GO:0004617: phosphoglycerate dehydrogenase activity	4.33E-04
21	GO:0033201: alpha-1,4-glucan synthase activity	4.33E-04
22	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.33E-04
23	GO:0018708: thiol S-methyltransferase activity	4.33E-04
24	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.33E-04
25	GO:0019156: isoamylase activity	4.33E-04
26	GO:0004565: beta-galactosidase activity	5.01E-04
27	GO:0031409: pigment binding	7.02E-04
28	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	7.06E-04
29	GO:0008864: formyltetrahydrofolate deformylase activity	7.06E-04
30	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.06E-04
31	GO:0004373: glycogen (starch) synthase activity	7.06E-04
32	GO:0050734: hydroxycinnamoyltransferase activity	7.06E-04
33	GO:0004185: serine-type carboxypeptidase activity	7.33E-04
34	GO:0042802: identical protein binding	8.02E-04
35	GO:0051287: NAD binding	9.29E-04
36	GO:0046715: borate transmembrane transporter activity	1.01E-03
37	GO:0001872: (1->3)-beta-D-glucan binding	1.01E-03
38	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.01E-03
39	GO:0016851: magnesium chelatase activity	1.01E-03
40	GO:0015204: urea transmembrane transporter activity	1.34E-03
41	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.34E-03
42	GO:0008453: alanine-glyoxylate transaminase activity	1.34E-03
43	GO:0015098: molybdate ion transmembrane transporter activity	1.34E-03
44	GO:0016615: malate dehydrogenase activity	2.10E-03
45	GO:2001070: starch binding	2.10E-03
46	GO:0004784: superoxide dismutase activity	2.10E-03
47	GO:0004556: alpha-amylase activity	2.10E-03
48	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.52E-03
49	GO:0102391: decanoate--CoA ligase activity	2.52E-03
50	GO:0030060: L-malate dehydrogenase activity	2.52E-03
51	GO:0016168: chlorophyll binding	2.82E-03
52	GO:0004467: long-chain fatty acid-CoA ligase activity	2.96E-03
53	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.93E-03
54	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.46E-03
55	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.99E-03
56	GO:0050661: NADP binding	5.01E-03
57	GO:0008047: enzyme activator activity	5.55E-03
58	GO:0051537: 2 iron, 2 sulfur cluster binding	6.12E-03
59	GO:0047372: acylglycerol lipase activity	6.13E-03
60	GO:0004089: carbonate dehydratase activity	7.36E-03
61	GO:0010329: auxin efflux transmembrane transporter activity	7.36E-03
62	GO:0004022: alcohol dehydrogenase (NAD) activity	7.36E-03
63	GO:0003774: motor activity	8.01E-03
64	GO:0008266: poly(U) RNA binding	8.01E-03
65	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.01E-03
66	GO:0045330: aspartyl esterase activity	8.45E-03
67	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	9.32E-03
68	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	9.79E-03
69	GO:0030599: pectinesterase activity	1.02E-02
70	GO:0016760: cellulose synthase (UDP-forming) activity	1.31E-02
71	GO:0008810: cellulase activity	1.31E-02
72	GO:0003727: single-stranded RNA binding	1.39E-02
73	GO:0047134: protein-disulfide reductase activity	1.47E-02
74	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.63E-02
75	GO:0004791: thioredoxin-disulfide reductase activity	1.72E-02
76	GO:0016853: isomerase activity	1.72E-02
77	GO:0050662: coenzyme binding	1.72E-02
78	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.90E-02
79	GO:0048038: quinone binding	1.90E-02
80	GO:0016787: hydrolase activity	1.99E-02
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.08E-02
82	GO:0016759: cellulose synthase activity	2.18E-02
83	GO:0016597: amino acid binding	2.37E-02
84	GO:0015250: water channel activity	2.47E-02
85	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.77E-02
86	GO:0102483: scopolin beta-glucosidase activity	2.77E-02
87	GO:0030247: polysaccharide binding	2.77E-02
88	GO:0016491: oxidoreductase activity	2.80E-02
89	GO:0008168: methyltransferase activity	2.81E-02
90	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	2.88E-02
91	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.88E-02
92	GO:0016788: hydrolase activity, acting on ester bonds	2.98E-02
93	GO:0003993: acid phosphatase activity	3.64E-02
94	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.64E-02
95	GO:0030246: carbohydrate binding	3.69E-02
96	GO:0008422: beta-glucosidase activity	3.76E-02
97	GO:0052689: carboxylic ester hydrolase activity	4.00E-02
98	GO:0004364: glutathione transferase activity	4.11E-02
99	GO:0043621: protein self-association	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009507: chloroplast	2.04E-25
3	GO:0009535: chloroplast thylakoid membrane	8.40E-15
4	GO:0009534: chloroplast thylakoid	9.55E-15
5	GO:0009941: chloroplast envelope	5.88E-11
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.33E-08
7	GO:0009579: thylakoid	1.48E-07
8	GO:0009570: chloroplast stroma	2.89E-07
9	GO:0010287: plastoglobule	1.95E-06
10	GO:0009543: chloroplast thylakoid lumen	2.31E-06
11	GO:0031969: chloroplast membrane	3.65E-05
12	GO:0048046: apoplast	6.01E-05
13	GO:0009522: photosystem I	1.35E-04
14	GO:0009515: granal stacked thylakoid	1.93E-04
15	GO:0005787: signal peptidase complex	1.93E-04
16	GO:0009344: nitrite reductase complex [NAD(P)H]	1.93E-04
17	GO:0010319: stromule	2.36E-04
18	GO:0043036: starch grain	4.33E-04
19	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.33E-04
20	GO:0030095: chloroplast photosystem II	5.65E-04
21	GO:0030076: light-harvesting complex	6.32E-04
22	GO:0031977: thylakoid lumen	6.61E-04
23	GO:0010007: magnesium chelatase complex	7.06E-04
24	GO:0009654: photosystem II oxygen evolving complex	8.55E-04
25	GO:0009517: PSII associated light-harvesting complex II	1.34E-03
26	GO:0009523: photosystem II	1.73E-03
27	GO:0019898: extrinsic component of membrane	1.73E-03
28	GO:0005777: peroxisome	1.97E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.10E-03
30	GO:0009501: amyloplast	3.43E-03
31	GO:0008180: COP9 signalosome	4.44E-03
32	GO:0016459: myosin complex	5.55E-03
33	GO:0043234: protein complex	9.35E-03
34	GO:0042651: thylakoid membrane	1.08E-02
35	GO:0005773: vacuole	1.46E-02
36	GO:0005576: extracellular region	1.56E-02
37	GO:0005618: cell wall	2.14E-02
38	GO:0016021: integral component of membrane	2.34E-02
39	GO:0009505: plant-type cell wall	2.61E-02
40	GO:0019005: SCF ubiquitin ligase complex	2.98E-02
41	GO:0009707: chloroplast outer membrane	2.98E-02