co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G10350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
2	GO:0042352: GDP-L-fucose salvage	0.00E+00
3	GO:0006849: plasma membrane pyruvate transport	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
6	GO:0006353: DNA-templated transcription, termination	2.21E-05
7	GO:0031425: chloroplast RNA processing	4.36E-05
8	GO:0043686: co-translational protein modification	5.48E-05
9	GO:0043007: maintenance of rDNA	5.48E-05
10	GO:0005980: glycogen catabolic process	5.48E-05
11	GO:0009658: chloroplast organization	6.50E-05
12	GO:0009662: etioplast organization	1.34E-04
13	GO:0090342: regulation of cell aging	1.34E-04
14	GO:0042325: regulation of phosphorylation	1.34E-04
15	GO:0071452: cellular response to singlet oxygen	1.34E-04
16	GO:0016050: vesicle organization	2.28E-04
17	GO:0009793: embryo development ending in seed dormancy	2.35E-04
18	GO:0046739: transport of virus in multicellular host	3.33E-04
19	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	3.33E-04
20	GO:0010601: positive regulation of auxin biosynthetic process	3.33E-04
21	GO:0010027: thylakoid membrane organization	5.19E-04
22	GO:0032543: mitochondrial translation	5.66E-04
23	GO:0031365: N-terminal protein amino acid modification	5.66E-04
24	GO:0042793: transcription from plastid promoter	6.92E-04
25	GO:0048831: regulation of shoot system development	6.92E-04
26	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.92E-04
27	GO:0010310: regulation of hydrogen peroxide metabolic process	8.25E-04
28	GO:2000033: regulation of seed dormancy process	8.25E-04
29	GO:1901259: chloroplast rRNA processing	8.25E-04
30	GO:0010098: suspensor development	9.62E-04
31	GO:0048437: floral organ development	9.62E-04
32	GO:0048564: photosystem I assembly	1.11E-03
33	GO:0042255: ribosome assembly	1.11E-03
34	GO:0010497: plasmodesmata-mediated intercellular transport	1.26E-03
35	GO:0016042: lipid catabolic process	1.37E-03
36	GO:0010206: photosystem II repair	1.41E-03
37	GO:0006857: oligopeptide transport	1.52E-03
38	GO:0010205: photoinhibition	1.58E-03
39	GO:1900865: chloroplast RNA modification	1.58E-03
40	GO:0010629: negative regulation of gene expression	1.75E-03
41	GO:0000272: polysaccharide catabolic process	1.93E-03
42	GO:0009266: response to temperature stimulus	2.49E-03
43	GO:0080188: RNA-directed DNA methylation	2.70E-03
44	GO:0006418: tRNA aminoacylation for protein translation	3.32E-03
45	GO:0009451: RNA modification	3.50E-03
46	GO:0006730: one-carbon metabolic process	3.77E-03
47	GO:0008380: RNA splicing	4.08E-03
48	GO:0048544: recognition of pollen	5.22E-03
49	GO:0006814: sodium ion transport	5.22E-03
50	GO:0009556: microsporogenesis	5.48E-03
51	GO:1901657: glycosyl compound metabolic process	6.27E-03
52	GO:0030163: protein catabolic process	6.27E-03
53	GO:0009607: response to biotic stimulus	7.69E-03
54	GO:0006281: DNA repair	9.65E-03
55	GO:0006397: mRNA processing	1.01E-02
56	GO:0006364: rRNA processing	1.55E-02
57	GO:0035556: intracellular signal transduction	1.81E-02
58	GO:0009553: embryo sac development	1.95E-02
59	GO:0006396: RNA processing	2.04E-02
60	GO:0009742: brassinosteroid mediated signaling pathway	2.08E-02
61	GO:0006457: protein folding	2.23E-02
62	GO:0009790: embryo development	2.61E-02
63	GO:0006633: fatty acid biosynthetic process	2.75E-02
64	GO:0006508: proteolysis	2.94E-02
65	GO:0015031: protein transport	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity	0.00E+00
2	GO:0004823: leucine-tRNA ligase activity	0.00E+00
3	GO:0097100: supercoiled DNA binding	0.00E+00
4	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
5	GO:0050201: fucokinase activity	0.00E+00
6	GO:0004856: xylulokinase activity	5.48E-05
7	GO:0004645: phosphorylase activity	5.48E-05
8	GO:0008184: glycogen phosphorylase activity	5.48E-05
9	GO:0042586: peptide deformylase activity	5.48E-05
10	GO:0004176: ATP-dependent peptidase activity	1.74E-04
11	GO:0003913: DNA photolyase activity	2.28E-04
12	GO:0002161: aminoacyl-tRNA editing activity	2.28E-04
13	GO:0050833: pyruvate transmembrane transporter activity	2.28E-04
14	GO:0008508: bile acid:sodium symporter activity	3.33E-04
15	GO:0004335: galactokinase activity	4.45E-04
16	GO:0008237: metallopeptidase activity	4.63E-04
17	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.66E-04
18	GO:0004629: phospholipase C activity	6.92E-04
19	GO:0035673: oligopeptide transmembrane transporter activity	6.92E-04
20	GO:0102229: amylopectin maltohydrolase activity	6.92E-04
21	GO:0004222: metalloendopeptidase activity	7.35E-04
22	GO:0004435: phosphatidylinositol phospholipase C activity	8.25E-04
23	GO:0016161: beta-amylase activity	8.25E-04
24	GO:0071949: FAD binding	1.41E-03
25	GO:0004519: endonuclease activity	1.57E-03
26	GO:0008327: methyl-CpG binding	1.93E-03
27	GO:0015198: oligopeptide transporter activity	2.11E-03
28	GO:0004089: carbonate dehydratase activity	2.30E-03
29	GO:0031072: heat shock protein binding	2.30E-03
30	GO:0019888: protein phosphatase regulator activity	2.30E-03
31	GO:0008408: 3'-5' exonuclease activity	3.54E-03
32	GO:0003727: single-stranded RNA binding	4.23E-03
33	GO:0004812: aminoacyl-tRNA ligase activity	4.47E-03
34	GO:0004527: exonuclease activity	4.96E-03
35	GO:0102483: scopolin beta-glucosidase activity	8.29E-03
36	GO:0003723: RNA binding	9.36E-03
37	GO:0008422: beta-glucosidase activity	1.12E-02
38	GO:0016887: ATPase activity	1.50E-02
39	GO:0003690: double-stranded DNA binding	1.59E-02
40	GO:0016298: lipase activity	1.59E-02
41	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.79E-02
42	GO:0051082: unfolded protein binding	1.99E-02
43	GO:0019843: rRNA binding	2.34E-02
44	GO:0030170: pyridoxal phosphate binding	2.52E-02
45	GO:0004252: serine-type endopeptidase activity	2.52E-02
46	GO:0005525: GTP binding	2.83E-02
47	GO:0005215: transporter activity	3.85E-02
48	GO:0008168: methyltransferase activity	3.91E-02
49	GO:0000287: magnesium ion binding	3.96E-02
50	GO:0016788: hydrolase activity, acting on ester bonds	4.07E-02
51	GO:0004497: monooxygenase activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.60E-09
2	GO:0009570: chloroplast stroma	2.56E-08
3	GO:0009295: nucleoid	4.63E-04
4	GO:0009534: chloroplast thylakoid	6.37E-04
5	GO:0009840: chloroplastic endopeptidase Clp complex	8.25E-04
6	GO:0005655: nucleolar ribonuclease P complex	8.25E-04
7	GO:0009941: chloroplast envelope	1.00E-03
8	GO:0042644: chloroplast nucleoid	1.41E-03
9	GO:0000159: protein phosphatase type 2A complex	1.93E-03
10	GO:0009706: chloroplast inner membrane	2.00E-03
11	GO:0009508: plastid chromosome	2.30E-03
12	GO:0009532: plastid stroma	3.54E-03
13	GO:0030529: intracellular ribonucleoprotein complex	7.40E-03
14	GO:0009536: plastid	9.23E-03
15	GO:0009535: chloroplast thylakoid membrane	1.98E-02
16	GO:0009579: thylakoid	2.06E-02