co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G10060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0015995: chlorophyll biosynthetic process	2.73E-11
3	GO:0015979: photosynthesis	7.11E-10
4	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.45E-07
5	GO:0010206: photosystem II repair	1.44E-06
6	GO:0006000: fructose metabolic process	2.44E-06
7	GO:0005983: starch catabolic process	4.46E-06
8	GO:0009735: response to cytokinin	4.63E-06
9	GO:0030091: protein repair	6.75E-05
10	GO:0032544: plastid translation	8.55E-05
11	GO:0006002: fructose 6-phosphate metabolic process	8.55E-05
12	GO:0005980: glycogen catabolic process	1.12E-04
13	GO:0071588: hydrogen peroxide mediated signaling pathway	1.12E-04
14	GO:0000023: maltose metabolic process	1.12E-04
15	GO:0000025: maltose catabolic process	1.12E-04
16	GO:0009631: cold acclimation	1.73E-04
17	GO:0009773: photosynthetic electron transport in photosystem I	1.78E-04
18	GO:0006094: gluconeogenesis	2.36E-04
19	GO:0005986: sucrose biosynthetic process	2.36E-04
20	GO:0005976: polysaccharide metabolic process	2.61E-04
21	GO:0010353: response to trehalose	2.61E-04
22	GO:0055114: oxidation-reduction process	2.69E-04
23	GO:0006636: unsaturated fatty acid biosynthetic process	3.37E-04
24	GO:0042254: ribosome biogenesis	3.48E-04
25	GO:0090391: granum assembly	4.32E-04
26	GO:0006518: peptide metabolic process	4.32E-04
27	GO:0061077: chaperone-mediated protein folding	4.53E-04
28	GO:0071484: cellular response to light intensity	6.19E-04
29	GO:0010021: amylopectin biosynthetic process	8.23E-04
30	GO:0045727: positive regulation of translation	8.23E-04
31	GO:0006412: translation	8.37E-04
32	GO:0000302: response to reactive oxygen species	8.98E-04
33	GO:0006461: protein complex assembly	1.04E-03
34	GO:0009854: oxidative photosynthetic carbon pathway	1.52E-03
35	GO:0010019: chloroplast-nucleus signaling pathway	1.52E-03
36	GO:0016311: dephosphorylation	1.57E-03
37	GO:0010196: nonphotochemical quenching	1.78E-03
38	GO:0009610: response to symbiotic fungus	1.78E-03
39	GO:0009772: photosynthetic electron transport in photosystem II	1.78E-03
40	GO:0034599: cellular response to oxidative stress	2.18E-03
41	GO:0009657: plastid organization	2.35E-03
42	GO:0006783: heme biosynthetic process	2.66E-03
43	GO:0006754: ATP biosynthetic process	2.66E-03
44	GO:0010205: photoinhibition	2.97E-03
45	GO:0006782: protoporphyrinogen IX biosynthetic process	3.30E-03
46	GO:0009089: lysine biosynthetic process via diaminopimelate	3.65E-03
47	GO:0000272: polysaccharide catabolic process	3.65E-03
48	GO:0009750: response to fructose	3.65E-03
49	GO:0018119: peptidyl-cysteine S-nitrosylation	3.65E-03
50	GO:0018107: peptidyl-threonine phosphorylation	4.36E-03
51	GO:0006629: lipid metabolic process	4.71E-03
52	GO:0019253: reductive pentose-phosphate cycle	4.74E-03
53	GO:0010207: photosystem II assembly	4.74E-03
54	GO:0009266: response to temperature stimulus	4.74E-03
55	GO:0005985: sucrose metabolic process	5.13E-03
56	GO:0071732: cellular response to nitric oxide	5.13E-03
57	GO:0000027: ribosomal large subunit assembly	5.93E-03
58	GO:0051017: actin filament bundle assembly	5.93E-03
59	GO:0006979: response to oxidative stress	5.97E-03
60	GO:0009768: photosynthesis, light harvesting in photosystem I	6.35E-03
61	GO:0035428: hexose transmembrane transport	7.22E-03
62	GO:0042744: hydrogen peroxide catabolic process	7.26E-03
63	GO:0071369: cellular response to ethylene stimulus	7.67E-03
64	GO:0006633: fatty acid biosynthetic process	8.01E-03
65	GO:0070417: cellular response to cold	8.60E-03
66	GO:0007623: circadian rhythm	8.80E-03
67	GO:0042631: cellular response to water deprivation	9.08E-03
68	GO:0046323: glucose import	9.57E-03
69	GO:0015986: ATP synthesis coupled proton transport	1.01E-02
70	GO:0019252: starch biosynthetic process	1.06E-02
71	GO:0071281: cellular response to iron ion	1.22E-02
72	GO:0009658: chloroplast organization	1.37E-02
73	GO:0010027: thylakoid membrane organization	1.44E-02
74	GO:0009817: defense response to fungus, incompatible interaction	1.74E-02
75	GO:0018298: protein-chromophore linkage	1.74E-02
76	GO:0010218: response to far red light	1.86E-02
77	GO:0007568: aging	1.93E-02
78	GO:0009637: response to blue light	2.06E-02
79	GO:0009853: photorespiration	2.06E-02
80	GO:0009793: embryo development ending in seed dormancy	2.09E-02
81	GO:0032259: methylation	2.40E-02
82	GO:0010114: response to red light	2.46E-02
83	GO:0006364: rRNA processing	3.04E-02
84	GO:0009409: response to cold	3.47E-02
85	GO:0006810: transport	3.84E-02
86	GO:0018105: peptidyl-serine phosphorylation	3.99E-02
87	GO:0046686: response to cadmium ion	4.13E-02

Rank	GO Term	Adjusted P value
1	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
2	GO:0008887: glycerate kinase activity	0.00E+00
3	GO:0046408: chlorophyll synthetase activity	0.00E+00
4	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0019843: rRNA binding	7.03E-09
7	GO:0010297: heteropolysaccharide binding	6.45E-07
8	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.45E-07
9	GO:0016851: magnesium chelatase activity	5.76E-06
10	GO:0004130: cytochrome-c peroxidase activity	2.72E-05
11	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.84E-05
12	GO:0003735: structural constituent of ribosome	6.32E-05
13	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.12E-04
14	GO:0004853: uroporphyrinogen decarboxylase activity	1.12E-04
15	GO:0045485: omega-6 fatty acid desaturase activity	1.12E-04
16	GO:0004134: 4-alpha-glucanotransferase activity	1.12E-04
17	GO:0004645: phosphorylase activity	1.12E-04
18	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.12E-04
19	GO:0050521: alpha-glucan, water dikinase activity	1.12E-04
20	GO:0008184: glycogen phosphorylase activity	1.12E-04
21	GO:0008967: phosphoglycolate phosphatase activity	2.61E-04
22	GO:0018708: thiol S-methyltransferase activity	2.61E-04
23	GO:0016630: protochlorophyllide reductase activity	2.61E-04
24	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.61E-04
25	GO:0042389: omega-3 fatty acid desaturase activity	2.61E-04
26	GO:0033201: alpha-1,4-glucan synthase activity	2.61E-04
27	GO:0005528: FK506 binding	3.73E-04
28	GO:0070402: NADPH binding	4.32E-04
29	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	4.32E-04
30	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	4.32E-04
31	GO:0004324: ferredoxin-NADP+ reductase activity	4.32E-04
32	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.32E-04
33	GO:0004373: glycogen (starch) synthase activity	4.32E-04
34	GO:0019201: nucleotide kinase activity	6.19E-04
35	GO:0009011: starch synthase activity	8.23E-04
36	GO:0003959: NADPH dehydrogenase activity	1.04E-03
37	GO:0016688: L-ascorbate peroxidase activity	1.27E-03
38	GO:0008200: ion channel inhibitor activity	1.27E-03
39	GO:2001070: starch binding	1.27E-03
40	GO:0004017: adenylate kinase activity	1.52E-03
41	GO:0004602: glutathione peroxidase activity	1.52E-03
42	GO:0004033: aldo-keto reductase (NADP) activity	2.06E-03
43	GO:0016491: oxidoreductase activity	2.26E-03
44	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.35E-03
45	GO:0047617: acyl-CoA hydrolase activity	2.97E-03
46	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.11E-03
47	GO:0030234: enzyme regulator activity	3.30E-03
48	GO:0015386: potassium:proton antiporter activity	3.65E-03
49	GO:0044183: protein binding involved in protein folding	3.65E-03
50	GO:0047372: acylglycerol lipase activity	3.65E-03
51	GO:0031072: heat shock protein binding	4.36E-03
52	GO:0008266: poly(U) RNA binding	4.74E-03
53	GO:0031409: pigment binding	5.52E-03
54	GO:0015079: potassium ion transmembrane transporter activity	6.35E-03
55	GO:0003756: protein disulfide isomerase activity	8.13E-03
56	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.57E-03
57	GO:0005355: glucose transmembrane transporter activity	1.01E-02
58	GO:0050662: coenzyme binding	1.01E-02
59	GO:0048038: quinone binding	1.11E-02
60	GO:0051015: actin filament binding	1.22E-02
61	GO:0008168: methyltransferase activity	1.31E-02
62	GO:0016168: chlorophyll binding	1.50E-02
63	GO:0004222: metalloendopeptidase activity	1.86E-02
64	GO:0016787: hydrolase activity	1.86E-02
65	GO:0003746: translation elongation factor activity	2.06E-02
66	GO:0003993: acid phosphatase activity	2.12E-02
67	GO:0051537: 2 iron, 2 sulfur cluster binding	2.60E-02
68	GO:0051082: unfolded protein binding	3.91E-02
69	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.68E-02
70	GO:0030170: pyridoxal phosphate binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	2.65E-45
3	GO:0009534: chloroplast thylakoid	9.95E-34
4	GO:0009535: chloroplast thylakoid membrane	1.85E-29
5	GO:0009941: chloroplast envelope	5.60E-28
6	GO:0009570: chloroplast stroma	4.60E-22
7	GO:0009579: thylakoid	5.94E-16
8	GO:0009543: chloroplast thylakoid lumen	1.87E-10
9	GO:0031977: thylakoid lumen	1.96E-10
10	GO:0010007: magnesium chelatase complex	2.44E-06
11	GO:0010287: plastoglobule	4.95E-06
12	GO:0005840: ribosome	7.58E-06
13	GO:0031969: chloroplast membrane	5.78E-05
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.05E-04
15	GO:0009515: granal stacked thylakoid	1.12E-04
16	GO:0031357: integral component of chloroplast inner membrane	2.61E-04
17	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.61E-04
18	GO:0030095: chloroplast photosystem II	2.68E-04
19	GO:0009706: chloroplast inner membrane	6.44E-04
20	GO:0009544: chloroplast ATP synthase complex	8.23E-04
21	GO:0009523: photosystem II	8.42E-04
22	GO:0010319: stromule	1.14E-03
23	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.27E-03
24	GO:0009533: chloroplast stromal thylakoid	1.78E-03
25	GO:0016020: membrane	1.91E-03
26	GO:0009538: photosystem I reaction center	2.06E-03
27	GO:0009501: amyloplast	2.06E-03
28	GO:0042644: chloroplast nucleoid	2.66E-03
29	GO:0009508: plastid chromosome	4.36E-03
30	GO:0030076: light-harvesting complex	5.13E-03
31	GO:0042651: thylakoid membrane	6.35E-03
32	GO:0015935: small ribosomal subunit	6.78E-03
33	GO:0015629: actin cytoskeleton	7.67E-03
34	GO:0009522: photosystem I	1.01E-02
35	GO:0009295: nucleoid	1.33E-02
36	GO:0009707: chloroplast outer membrane	1.74E-02
37	GO:0022625: cytosolic large ribosomal subunit	1.78E-02
38	GO:0015934: large ribosomal subunit	1.93E-02
39	GO:0005856: cytoskeleton	2.67E-02
40	GO:0022626: cytosolic ribosome	4.24E-02