Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G09780

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
2GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
3GO:0080127: fruit septum development0.00E+00
4GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
5GO:0044774: mitotic DNA integrity checkpoint0.00E+00
6GO:0046486: glycerolipid metabolic process0.00E+00
7GO:0006907: pinocytosis0.00E+00
8GO:0070125: mitochondrial translational elongation0.00E+00
9GO:0045014: negative regulation of transcription by glucose0.00E+00
10GO:0000819: sister chromatid segregation0.00E+00
11GO:0043039: tRNA aminoacylation2.65E-05
12GO:0009658: chloroplast organization3.08E-05
13GO:0046620: regulation of organ growth8.32E-05
14GO:0051513: regulation of monopolar cell growth1.74E-04
15GO:0010583: response to cyclopentenone4.24E-04
16GO:0048497: maintenance of floral organ identity4.34E-04
17GO:0009926: auxin polar transport4.39E-04
18GO:0009733: response to auxin5.60E-04
19GO:0009734: auxin-activated signaling pathway5.89E-04
20GO:0009736: cytokinin-activated signaling pathway7.55E-04
21GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process7.94E-04
22GO:0006438: valyl-tRNA aminoacylation7.94E-04
23GO:0046520: sphingoid biosynthetic process7.94E-04
24GO:0032958: inositol phosphate biosynthetic process7.94E-04
25GO:0006426: glycyl-tRNA aminoacylation7.94E-04
26GO:0015904: tetracycline transport7.94E-04
27GO:0034757: negative regulation of iron ion transport7.94E-04
28GO:0006434: seryl-tRNA aminoacylation7.94E-04
29GO:0010726: positive regulation of hydrogen peroxide metabolic process7.94E-04
30GO:0009793: embryo development ending in seed dormancy1.03E-03
31GO:0000160: phosphorelay signal transduction system1.11E-03
32GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.13E-03
33GO:0000105: histidine biosynthetic process1.26E-03
34GO:0061062: regulation of nematode larval development1.72E-03
35GO:0010271: regulation of chlorophyll catabolic process1.72E-03
36GO:0018026: peptidyl-lysine monomethylation1.72E-03
37GO:0006650: glycerophospholipid metabolic process1.72E-03
38GO:0001736: establishment of planar polarity1.72E-03
39GO:0080009: mRNA methylation1.72E-03
40GO:0009786: regulation of asymmetric cell division1.72E-03
41GO:0031648: protein destabilization1.72E-03
42GO:2000123: positive regulation of stomatal complex development1.72E-03
43GO:1901529: positive regulation of anion channel activity1.72E-03
44GO:0000373: Group II intron splicing1.85E-03
45GO:0009958: positive gravitropism1.88E-03
46GO:0006782: protoporphyrinogen IX biosynthetic process2.57E-03
47GO:0048829: root cap development2.57E-03
48GO:0046168: glycerol-3-phosphate catabolic process2.84E-03
49GO:0006518: peptide metabolic process2.84E-03
50GO:0030029: actin filament-based process2.84E-03
51GO:0045910: negative regulation of DNA recombination2.84E-03
52GO:0090506: axillary shoot meristem initiation2.84E-03
53GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.84E-03
54GO:0080117: secondary growth2.84E-03
55GO:0006351: transcription, DNA-templated3.80E-03
56GO:0006072: glycerol-3-phosphate metabolic process4.14E-03
57GO:0006424: glutamyl-tRNA aminoacylation4.14E-03
58GO:2000904: regulation of starch metabolic process4.14E-03
59GO:0016556: mRNA modification4.14E-03
60GO:0010321: regulation of vegetative phase change4.14E-03
61GO:0045017: glycerolipid biosynthetic process4.14E-03
62GO:0010371: regulation of gibberellin biosynthetic process4.14E-03
63GO:0006020: inositol metabolic process4.14E-03
64GO:0051639: actin filament network formation4.14E-03
65GO:0034059: response to anoxia4.14E-03
66GO:0010239: chloroplast mRNA processing4.14E-03
67GO:0044211: CTP salvage4.14E-03
68GO:0007276: gamete generation4.14E-03
69GO:0009887: animal organ morphogenesis4.39E-03
70GO:0006863: purine nucleobase transport5.51E-03
71GO:2000038: regulation of stomatal complex development5.60E-03
72GO:0042991: transcription factor import into nucleus5.60E-03
73GO:0006021: inositol biosynthetic process5.60E-03
74GO:0044206: UMP salvage5.60E-03
75GO:0009956: radial pattern formation5.60E-03
76GO:0009755: hormone-mediated signaling pathway5.60E-03
77GO:0048629: trichome patterning5.60E-03
78GO:0051764: actin crosslink formation5.60E-03
79GO:0010311: lateral root formation5.98E-03
80GO:0051017: actin filament bundle assembly6.12E-03
81GO:0009696: salicylic acid metabolic process7.21E-03
82GO:0045487: gibberellin catabolic process7.21E-03
83GO:0010438: cellular response to sulfur starvation7.21E-03
84GO:0010375: stomatal complex patterning7.21E-03
85GO:0080110: sporopollenin biosynthetic process7.21E-03
86GO:0007005: mitochondrion organization8.17E-03
87GO:0071215: cellular response to abscisic acid stimulus8.93E-03
88GO:0009686: gibberellin biosynthetic process8.93E-03
89GO:0042793: transcription from plastid promoter8.96E-03
90GO:0048831: regulation of shoot system development8.96E-03
91GO:0003006: developmental process involved in reproduction8.96E-03
92GO:0006206: pyrimidine nucleobase metabolic process8.96E-03
93GO:0010942: positive regulation of cell death8.96E-03
94GO:0009913: epidermal cell differentiation8.96E-03
95GO:0010358: leaf shaping8.96E-03
96GO:1902456: regulation of stomatal opening8.96E-03
97GO:0016554: cytidine to uridine editing8.96E-03
98GO:0030001: metal ion transport8.99E-03
99GO:0042127: regulation of cell proliferation9.72E-03
100GO:0009082: branched-chain amino acid biosynthetic process1.09E-02
101GO:0048509: regulation of meristem development1.09E-02
102GO:0009099: valine biosynthetic process1.09E-02
103GO:0031930: mitochondria-nucleus signaling pathway1.09E-02
104GO:0009861: jasmonic acid and ethylene-dependent systemic resistance1.09E-02
105GO:0010087: phloem or xylem histogenesis1.14E-02
106GO:0006355: regulation of transcription, DNA-templated1.16E-02
107GO:0010305: leaf vascular tissue pattern formation1.23E-02
108GO:0009741: response to brassinosteroid1.23E-02
109GO:0040008: regulation of growth1.28E-02
110GO:0010444: guard mother cell differentiation1.29E-02
111GO:0000082: G1/S transition of mitotic cell cycle1.29E-02
112GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.29E-02
113GO:0000712: resolution of meiotic recombination intermediates1.29E-02
114GO:0045995: regulation of embryonic development1.29E-02
115GO:1900056: negative regulation of leaf senescence1.29E-02
116GO:0030497: fatty acid elongation1.29E-02
117GO:0010098: suspensor development1.29E-02
118GO:0007018: microtubule-based movement1.33E-02
119GO:0048825: cotyledon development1.43E-02
120GO:0009819: drought recovery1.50E-02
121GO:0009690: cytokinin metabolic process1.50E-02
122GO:0009704: de-etiolation1.50E-02
123GO:0042255: ribosome assembly1.50E-02
124GO:0006353: DNA-templated transcription, termination1.50E-02
125GO:2000070: regulation of response to water deprivation1.50E-02
126GO:0010492: maintenance of shoot apical meristem identity1.50E-02
127GO:0006402: mRNA catabolic process1.50E-02
128GO:0010439: regulation of glucosinolate biosynthetic process1.50E-02
129GO:0001522: pseudouridine synthesis1.50E-02
130GO:0071554: cell wall organization or biogenesis1.53E-02
131GO:0071555: cell wall organization1.62E-02
132GO:0032502: developmental process1.63E-02
133GO:0045892: negative regulation of transcription, DNA-templated1.64E-02
134GO:0007186: G-protein coupled receptor signaling pathway1.73E-02
135GO:0009097: isoleucine biosynthetic process1.73E-02
136GO:0010497: plasmodesmata-mediated intercellular transport1.73E-02
137GO:0032544: plastid translation1.73E-02
138GO:0071482: cellular response to light stimulus1.73E-02
139GO:0046916: cellular transition metal ion homeostasis1.97E-02
140GO:0048507: meristem development1.97E-02
141GO:0048589: developmental growth1.97E-02
142GO:0009056: catabolic process1.97E-02
143GO:0051865: protein autoubiquitination1.97E-02
144GO:0048367: shoot system development1.99E-02
145GO:0016042: lipid catabolic process2.18E-02
146GO:0016571: histone methylation2.22E-02
147GO:1900865: chloroplast RNA modification2.22E-02
148GO:0010027: thylakoid membrane organization2.22E-02
149GO:0016573: histone acetylation2.22E-02
150GO:0006779: porphyrin-containing compound biosynthetic process2.22E-02
151GO:0009098: leucine biosynthetic process2.22E-02
152GO:0009416: response to light stimulus2.33E-02
153GO:0048364: root development2.46E-02
154GO:0009641: shade avoidance2.48E-02
155GO:0006298: mismatch repair2.48E-02
156GO:0016441: posttranscriptional gene silencing2.48E-02
157GO:0006949: syncytium formation2.48E-02
158GO:0009627: systemic acquired resistance2.48E-02
159GO:0006259: DNA metabolic process2.48E-02
160GO:0010192: mucilage biosynthetic process2.48E-02
161GO:0031627: telomeric loop formation2.48E-02
162GO:0015995: chlorophyll biosynthetic process2.62E-02
163GO:0048573: photoperiodism, flowering2.62E-02
164GO:0009682: induced systemic resistance2.75E-02
165GO:0008285: negative regulation of cell proliferation2.75E-02
166GO:0009750: response to fructose2.75E-02
167GO:0048765: root hair cell differentiation2.75E-02
168GO:0006265: DNA topological change2.75E-02
169GO:0009817: defense response to fungus, incompatible interaction2.90E-02
170GO:0048481: plant ovule development2.90E-02
171GO:0010152: pollen maturation3.02E-02
172GO:0005983: starch catabolic process3.02E-02
173GO:0010105: negative regulation of ethylene-activated signaling pathway3.02E-02
174GO:0045037: protein import into chloroplast stroma3.02E-02
175GO:0010582: floral meristem determinacy3.02E-02
176GO:0006790: sulfur compound metabolic process3.02E-02
177GO:0006312: mitotic recombination3.02E-02
178GO:0012501: programmed cell death3.02E-02
179GO:0010102: lateral root morphogenesis3.31E-02
180GO:0009691: cytokinin biosynthetic process3.31E-02
181GO:2000028: regulation of photoperiodism, flowering3.31E-02
182GO:0010588: cotyledon vascular tissue pattern formation3.31E-02
183GO:0030048: actin filament-based movement3.31E-02
184GO:0009058: biosynthetic process3.42E-02
185GO:0006865: amino acid transport3.52E-02
186GO:0007034: vacuolar transport3.61E-02
187GO:0010020: chloroplast fission3.61E-02
188GO:0009933: meristem structural organization3.61E-02
189GO:0010223: secondary shoot formation3.61E-02
190GO:0010540: basipetal auxin transport3.61E-02
191GO:0009266: response to temperature stimulus3.61E-02
192GO:0006302: double-strand break repair3.61E-02
193GO:0048467: gynoecium development3.61E-02
194GO:0010207: photosystem II assembly3.61E-02
195GO:0009867: jasmonic acid mediated signaling pathway3.68E-02
196GO:0009825: multidimensional cell growth3.92E-02
197GO:0090351: seedling development3.92E-02
198GO:0046854: phosphatidylinositol phosphorylation3.92E-02
199GO:0006636: unsaturated fatty acid biosynthetic process4.23E-02
200GO:0009833: plant-type primary cell wall biogenesis4.23E-02
201GO:0000162: tryptophan biosynthetic process4.23E-02
202GO:0006631: fatty acid metabolic process4.36E-02
203GO:0006338: chromatin remodeling4.55E-02
204GO:0005992: trehalose biosynthetic process4.55E-02
205GO:0009744: response to sucrose4.73E-02
206GO:0006874: cellular calcium ion homeostasis4.88E-02
207GO:0019953: sexual reproduction4.88E-02
208GO:0006418: tRNA aminoacylation for protein translation4.88E-02
209GO:0009451: RNA modification4.90E-02
210GO:0042546: cell wall biogenesis4.91E-02
RankGO TermAdjusted P value
1GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
2GO:0004401: histidinol-phosphatase activity0.00E+00
3GO:0047661: amino-acid racemase activity0.00E+00
4GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
5GO:0009899: ent-kaurene synthase activity0.00E+00
6GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
7GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
8GO:0052834: inositol monophosphate phosphatase activity0.00E+00
9GO:0071633: dihydroceramidase activity0.00E+00
10GO:0008805: carbon-monoxide oxygenase activity2.65E-05
11GO:0001872: (1->3)-beta-D-glucan binding1.74E-04
12GO:0010011: auxin binding2.92E-04
13GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity7.94E-04
14GO:0000828: inositol hexakisphosphate kinase activity7.94E-04
15GO:0004832: valine-tRNA ligase activity7.94E-04
16GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity7.94E-04
17GO:0052381: tRNA dimethylallyltransferase activity7.94E-04
18GO:0004160: dihydroxy-acid dehydratase activity7.94E-04
19GO:0004820: glycine-tRNA ligase activity7.94E-04
20GO:0033857: diphosphoinositol-pentakisphosphate kinase activity7.94E-04
21GO:0010347: L-galactose-1-phosphate phosphatase activity7.94E-04
22GO:0010012: steroid 22-alpha hydroxylase activity7.94E-04
23GO:0000170: sphingosine hydroxylase activity7.94E-04
24GO:0000829: inositol heptakisphosphate kinase activity7.94E-04
25GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity7.94E-04
26GO:0004828: serine-tRNA ligase activity7.94E-04
27GO:0004818: glutamate-tRNA ligase activity7.94E-04
28GO:0004176: ATP-dependent peptidase activity9.98E-04
29GO:0042284: sphingolipid delta-4 desaturase activity1.72E-03
30GO:0019156: isoamylase activity1.72E-03
31GO:0008934: inositol monophosphate 1-phosphatase activity1.72E-03
32GO:0008493: tetracycline transporter activity1.72E-03
33GO:0052833: inositol monophosphate 4-phosphatase activity1.72E-03
34GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.72E-03
35GO:0050736: O-malonyltransferase activity1.72E-03
36GO:0009884: cytokinin receptor activity1.72E-03
37GO:0003852: 2-isopropylmalate synthase activity1.72E-03
38GO:0045543: gibberellin 2-beta-dioxygenase activity1.72E-03
39GO:0010296: prenylcysteine methylesterase activity1.72E-03
40GO:0052832: inositol monophosphate 3-phosphatase activity1.72E-03
41GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.72E-03
42GO:0004109: coproporphyrinogen oxidase activity1.72E-03
43GO:0005034: osmosensor activity2.84E-03
44GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.84E-03
45GO:0000156: phosphorelay response regulator activity2.92E-03
46GO:0051015: actin filament binding2.92E-03
47GO:0004519: endonuclease activity2.99E-03
48GO:0008237: metallopeptidase activity3.43E-03
49GO:0003777: microtubule motor activity4.06E-03
50GO:0003916: DNA topoisomerase activity4.14E-03
51GO:0080031: methyl salicylate esterase activity4.14E-03
52GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity4.14E-03
53GO:0052689: carboxylic ester hydrolase activity4.36E-03
54GO:0003723: RNA binding4.77E-03
55GO:0019199: transmembrane receptor protein kinase activity5.60E-03
56GO:0004930: G-protein coupled receptor activity5.60E-03
57GO:0016279: protein-lysine N-methyltransferase activity5.60E-03
58GO:0004845: uracil phosphoribosyltransferase activity5.60E-03
59GO:0016836: hydro-lyase activity5.60E-03
60GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed5.60E-03
61GO:0010328: auxin influx transmembrane transporter activity5.60E-03
62GO:0003779: actin binding5.71E-03
63GO:0004222: metalloendopeptidase activity6.36E-03
64GO:0016887: ATPase activity6.48E-03
65GO:0005345: purine nucleobase transmembrane transporter activity6.77E-03
66GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.21E-03
67GO:0008725: DNA-3-methyladenine glycosylase activity7.21E-03
68GO:0008408: 3'-5' exonuclease activity7.45E-03
69GO:0016788: hydrolase activity, acting on ester bonds8.32E-03
70GO:0004556: alpha-amylase activity8.96E-03
71GO:0030983: mismatched DNA binding8.96E-03
72GO:0080030: methyl indole-3-acetate esterase activity8.96E-03
73GO:0004709: MAP kinase kinase kinase activity8.96E-03
74GO:0003727: single-stranded RNA binding9.72E-03
75GO:0004849: uridine kinase activity1.09E-02
76GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.09E-02
77GO:0016832: aldehyde-lyase activity1.09E-02
78GO:0019900: kinase binding1.09E-02
79GO:0043621: protein self-association1.17E-02
80GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity1.23E-02
81GO:0004674: protein serine/threonine kinase activity1.30E-02
82GO:0016298: lipase activity1.61E-02
83GO:0004518: nuclease activity1.63E-02
84GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.73E-02
85GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.73E-02
86GO:0003724: RNA helicase activity1.73E-02
87GO:0046914: transition metal ion binding1.73E-02
88GO:0016759: cellulose synthase activity1.86E-02
89GO:0004722: protein serine/threonine phosphatase activity1.88E-02
90GO:0005200: structural constituent of cytoskeleton1.97E-02
91GO:0016413: O-acetyltransferase activity2.10E-02
92GO:0005524: ATP binding2.39E-02
93GO:0004673: protein histidine kinase activity2.48E-02
94GO:0004805: trehalose-phosphatase activity2.48E-02
95GO:0009055: electron carrier activity2.58E-02
96GO:0030247: polysaccharide binding2.62E-02
97GO:0003691: double-stranded telomeric DNA binding2.75E-02
98GO:0003700: transcription factor activity, sequence-specific DNA binding2.94E-02
99GO:0000049: tRNA binding3.02E-02
100GO:0005096: GTPase activator activity3.05E-02
101GO:0000155: phosphorelay sensor kinase activity3.31E-02
102GO:0009982: pseudouridine synthase activity3.31E-02
103GO:0003725: double-stranded RNA binding3.31E-02
104GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.61E-02
105GO:0003774: motor activity3.61E-02
106GO:0003697: single-stranded DNA binding3.68E-02
107GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.76E-02
108GO:0005515: protein binding3.78E-02
109GO:0003712: transcription cofactor activity3.92E-02
110GO:0004970: ionotropic glutamate receptor activity3.92E-02
111GO:0005217: intracellular ligand-gated ion channel activity3.92E-02
112GO:0004190: aspartic-type endopeptidase activity3.92E-02
113GO:0016301: kinase activity4.62E-02
114GO:0043424: protein histidine kinase binding4.88E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0009537: proplastid0.00E+00
3GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
4GO:0000791: euchromatin7.94E-04
5GO:0009986: cell surface1.01E-03
6GO:0031357: integral component of chloroplast inner membrane1.72E-03
7GO:0009569: chloroplast starch grain1.72E-03
8GO:0030870: Mre11 complex1.72E-03
9GO:0000427: plastid-encoded plastid RNA polymerase complex1.72E-03
10GO:0009513: etioplast1.72E-03
11GO:0009509: chromoplast2.84E-03
12GO:0030139: endocytic vesicle2.84E-03
13GO:0005884: actin filament2.97E-03
14GO:0032432: actin filament bundle4.14E-03
15GO:0009331: glycerol-3-phosphate dehydrogenase complex4.14E-03
16GO:0032585: multivesicular body membrane4.14E-03
17GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)5.60E-03
18GO:0005886: plasma membrane5.82E-03
19GO:0046658: anchored component of plasma membrane6.12E-03
20GO:0000795: synaptonemal complex7.21E-03
21GO:0015629: actin cytoskeleton8.93E-03
22GO:0005871: kinesin complex1.06E-02
23GO:0009507: chloroplast1.06E-02
24GO:0000815: ESCRT III complex1.09E-02
25GO:0009536: plastid1.11E-02
26GO:0009501: amyloplast1.50E-02
27GO:0000783: nuclear telomere cap complex1.73E-02
28GO:0010494: cytoplasmic stress granule1.97E-02
29GO:0009941: chloroplast envelope2.18E-02
30GO:0031225: anchored component of membrane2.22E-02
31GO:0000418: DNA-directed RNA polymerase IV complex2.48E-02
32GO:0016459: myosin complex2.48E-02
33GO:0009508: plastid chromosome3.31E-02
34GO:0030095: chloroplast photosystem II3.61E-02
35GO:0005875: microtubule associated complex4.23E-02
36GO:0009654: photosystem II oxygen evolving complex4.88E-02
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Gene type



Gene DE type