co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G09570

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070070: proton-transporting V-type ATPase complex assembly	0.00E+00
2	GO:0046680: response to DDT	0.00E+00
3	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
4	GO:0010398: xylogalacturonan metabolic process	0.00E+00
5	GO:0016102: diterpenoid biosynthetic process	0.00E+00
6	GO:0072722: response to amitrole	0.00E+00
7	GO:0006102: isocitrate metabolic process	2.73E-05
8	GO:0000032: cell wall mannoprotein biosynthetic process	6.26E-05
9	GO:1901430: positive regulation of syringal lignin biosynthetic process	6.26E-05
10	GO:0006099: tricarboxylic acid cycle	6.87E-05
11	GO:0006807: nitrogen compound metabolic process	1.03E-04
12	GO:0080026: response to indolebutyric acid	1.52E-04
13	GO:0006996: organelle organization	1.52E-04
14	GO:0033591: response to L-ascorbic acid	2.57E-04
15	GO:0006556: S-adenosylmethionine biosynthetic process	2.57E-04
16	GO:0009062: fatty acid catabolic process	2.57E-04
17	GO:0010272: response to silver ion	2.57E-04
18	GO:0015991: ATP hydrolysis coupled proton transport	3.21E-04
19	GO:0080024: indolebutyric acid metabolic process	3.73E-04
20	GO:0009298: GDP-mannose biosynthetic process	3.73E-04
21	GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly	3.73E-04
22	GO:0000304: response to singlet oxygen	6.32E-04
23	GO:0098719: sodium ion import across plasma membrane	6.32E-04
24	GO:0006564: L-serine biosynthetic process	6.32E-04
25	GO:0006555: methionine metabolic process	7.73E-04
26	GO:0007035: vacuolar acidification	7.73E-04
27	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	7.73E-04
28	GO:0019509: L-methionine salvage from methylthioadenosine	9.20E-04
29	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	9.20E-04
30	GO:0080113: regulation of seed growth	9.20E-04
31	GO:0080027: response to herbivore	1.07E-03
32	GO:0009657: plastid organization	1.41E-03
33	GO:0010120: camalexin biosynthetic process	1.41E-03
34	GO:0006754: ATP biosynthetic process	1.58E-03
35	GO:0051453: regulation of intracellular pH	1.77E-03
36	GO:0006032: chitin catabolic process	1.96E-03
37	GO:0009688: abscisic acid biosynthetic process	1.96E-03
38	GO:0009682: induced systemic resistance	2.17E-03
39	GO:0006415: translational termination	2.17E-03
40	GO:0072593: reactive oxygen species metabolic process	2.17E-03
41	GO:0000272: polysaccharide catabolic process	2.17E-03
42	GO:0006790: sulfur compound metabolic process	2.37E-03
43	GO:0009266: response to temperature stimulus	2.80E-03
44	GO:0019853: L-ascorbic acid biosynthetic process	3.03E-03
45	GO:0046854: phosphatidylinositol phosphorylation	3.03E-03
46	GO:0009058: biosynthetic process	3.11E-03
47	GO:0042744: hydrogen peroxide catabolic process	3.36E-03
48	GO:0046686: response to cadmium ion	3.52E-03
49	GO:0006366: transcription from RNA polymerase II promoter	3.98E-03
50	GO:0016998: cell wall macromolecule catabolic process	3.98E-03
51	GO:0010150: leaf senescence	4.06E-03
52	GO:0006730: one-carbon metabolic process	4.24E-03
53	GO:0009693: ethylene biosynthetic process	4.50E-03
54	GO:0009561: megagametogenesis	4.76E-03
55	GO:0010089: xylem development	4.76E-03
56	GO:0009617: response to bacterium	4.84E-03
57	GO:0042147: retrograde transport, endosome to Golgi	5.03E-03
58	GO:0016117: carotenoid biosynthetic process	5.03E-03
59	GO:0045489: pectin biosynthetic process	5.59E-03
60	GO:0015986: ATP synthesis coupled proton transport	5.88E-03
61	GO:0006814: sodium ion transport	5.88E-03
62	GO:0009646: response to absence of light	5.88E-03
63	GO:0009851: auxin biosynthetic process	6.17E-03
64	GO:0006635: fatty acid beta-oxidation	6.46E-03
65	GO:0030163: protein catabolic process	7.07E-03
66	GO:0071281: cellular response to iron ion	7.07E-03
67	GO:0019760: glucosinolate metabolic process	7.38E-03
68	GO:0006464: cellular protein modification process	7.38E-03
69	GO:0006914: autophagy	7.38E-03
70	GO:0071805: potassium ion transmembrane transport	7.70E-03
71	GO:0055114: oxidation-reduction process	8.27E-03
72	GO:0009615: response to virus	8.35E-03
73	GO:0009627: systemic acquired resistance	9.01E-03
74	GO:0006888: ER to Golgi vesicle-mediated transport	9.36E-03
75	GO:0048573: photoperiodism, flowering	9.36E-03
76	GO:0006886: intracellular protein transport	9.61E-03
77	GO:0048767: root hair elongation	1.04E-02
78	GO:0009407: toxin catabolic process	1.08E-02
79	GO:0010043: response to zinc ion	1.11E-02
80	GO:0007568: aging	1.11E-02
81	GO:0045087: innate immune response	1.19E-02
82	GO:0009744: response to sucrose	1.42E-02
83	GO:0009644: response to high light intensity	1.50E-02
84	GO:0009636: response to toxic substance	1.54E-02
85	GO:0009664: plant-type cell wall organization	1.67E-02
86	GO:0009809: lignin biosynthetic process	1.75E-02
87	GO:0006486: protein glycosylation	1.75E-02
88	GO:0006096: glycolytic process	1.98E-02
89	GO:0009416: response to light stimulus	2.05E-02
90	GO:0007165: signal transduction	2.25E-02
91	GO:0006952: defense response	2.39E-02
92	GO:0006511: ubiquitin-dependent protein catabolic process	2.78E-02
93	GO:0040008: regulation of growth	3.22E-02
94	GO:0050832: defense response to fungus	3.50E-02
95	GO:0007166: cell surface receptor signaling pathway	3.66E-02
96	GO:0042742: defense response to bacterium	4.13E-02
97	GO:0006979: response to oxidative stress	4.16E-02
98	GO:0009826: unidimensional cell growth	4.42E-02
99	GO:0009658: chloroplast organization	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
3	GO:0080013: (E,E)-geranyllinalool synthase activity	0.00E+00
4	GO:0016504: peptidase activator activity	0.00E+00
5	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
6	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.09E-06
7	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.04E-05
8	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.04E-05
9	GO:0019786: Atg8-specific protease activity	6.26E-05
10	GO:0048037: cofactor binding	6.26E-05
11	GO:0004476: mannose-6-phosphate isomerase activity	6.26E-05
12	GO:0000287: magnesium ion binding	8.66E-05
13	GO:0004775: succinate-CoA ligase (ADP-forming) activity	1.52E-04
14	GO:0019779: Atg8 activating enzyme activity	1.52E-04
15	GO:0004776: succinate-CoA ligase (GDP-forming) activity	1.52E-04
16	GO:0010297: heteropolysaccharide binding	1.52E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	1.52E-04
18	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	2.57E-04
19	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	2.57E-04
20	GO:0004478: methionine adenosyltransferase activity	2.57E-04
21	GO:0004416: hydroxyacylglutathione hydrolase activity	3.73E-04
22	GO:0016149: translation release factor activity, codon specific	3.73E-04
23	GO:0004165: dodecenoyl-CoA delta-isomerase activity	3.73E-04
24	GO:0070628: proteasome binding	4.99E-04
25	GO:0004031: aldehyde oxidase activity	4.99E-04
26	GO:0050302: indole-3-acetaldehyde oxidase activity	4.99E-04
27	GO:0019776: Atg8 ligase activity	4.99E-04
28	GO:0009916: alternative oxidase activity	4.99E-04
29	GO:0051117: ATPase binding	7.73E-04
30	GO:0035252: UDP-xylosyltransferase activity	7.73E-04
31	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	9.20E-04
32	GO:0003950: NAD+ ADP-ribosyltransferase activity	9.20E-04
33	GO:0051287: NAD binding	1.51E-03
34	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.58E-03
35	GO:0003747: translation release factor activity	1.58E-03
36	GO:0004743: pyruvate kinase activity	1.77E-03
37	GO:0030955: potassium ion binding	1.77E-03
38	GO:0004568: chitinase activity	1.96E-03
39	GO:0015386: potassium:proton antiporter activity	2.17E-03
40	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.17E-03
41	GO:0008061: chitin binding	3.03E-03
42	GO:0016887: ATPase activity	3.06E-03
43	GO:0030170: pyridoxal phosphate binding	3.28E-03
44	GO:0001046: core promoter sequence-specific DNA binding	3.49E-03
45	GO:0010333: terpene synthase activity	3.98E-03
46	GO:0046872: metal ion binding	4.82E-03
47	GO:0005199: structural constituent of cell wall	5.59E-03
48	GO:0004601: peroxidase activity	6.27E-03
49	GO:0015385: sodium:proton antiporter activity	7.07E-03
50	GO:0050660: flavin adenine dinucleotide binding	7.25E-03
51	GO:0008237: metallopeptidase activity	7.70E-03
52	GO:0016597: amino acid binding	8.02E-03
53	GO:0005506: iron ion binding	8.71E-03
54	GO:0008375: acetylglucosaminyltransferase activity	9.01E-03
55	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.11E-02
56	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.11E-02
57	GO:0003746: translation elongation factor activity	1.19E-02
58	GO:0009055: electron carrier activity	1.23E-02
59	GO:0004364: glutathione transferase activity	1.38E-02
60	GO:0051537: 2 iron, 2 sulfur cluster binding	1.50E-02
61	GO:0020037: heme binding	1.59E-02
62	GO:0016298: lipase activity	1.80E-02
63	GO:0004386: helicase activity	2.40E-02
64	GO:0005507: copper ion binding	2.91E-02
65	GO:0008565: protein transporter activity	3.01E-02
66	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.17E-02
67	GO:0003824: catalytic activity	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0046862: chromoplast membrane	0.00E+00
2	GO:0012510: trans-Golgi network transport vesicle membrane	6.26E-05
3	GO:0009530: primary cell wall	2.57E-04
4	GO:0005775: vacuolar lumen	3.73E-04
5	GO:0005776: autophagosome	4.99E-04
6	GO:0016471: vacuolar proton-transporting V-type ATPase complex	4.99E-04
7	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	6.32E-04
8	GO:0030904: retromer complex	7.73E-04
9	GO:0030127: COPII vesicle coat	7.73E-04
10	GO:0005794: Golgi apparatus	7.75E-04
11	GO:0000421: autophagosome membrane	1.24E-03
12	GO:0000502: proteasome complex	1.68E-03
13	GO:0008541: proteasome regulatory particle, lid subcomplex	2.17E-03
14	GO:0070469: respiratory chain	3.74E-03
15	GO:0005618: cell wall	3.91E-03
16	GO:0005839: proteasome core complex	3.98E-03
17	GO:0031410: cytoplasmic vesicle	4.24E-03
18	GO:0032580: Golgi cisterna membrane	7.38E-03
19	GO:0005886: plasma membrane	7.40E-03
20	GO:0005768: endosome	7.77E-03
21	GO:0009707: chloroplast outer membrane	1.01E-02
22	GO:0000325: plant-type vacuole	1.11E-02
23	GO:0009536: plastid	1.15E-02
24	GO:0031902: late endosome membrane	1.34E-02
25	GO:0005739: mitochondrion	1.44E-02
26	GO:0005829: cytosol	1.58E-02
27	GO:0010008: endosome membrane	2.02E-02
28	GO:0005777: peroxisome	2.35E-02
29	GO:0005623: cell	2.70E-02
30	GO:0016021: integral component of membrane	2.74E-02
31	GO:0016020: membrane	2.91E-02
32	GO:0005802: trans-Golgi network	3.28E-02
33	GO:0005783: endoplasmic reticulum	3.35E-02
34	GO:0005622: intracellular	3.63E-02
35	GO:0005774: vacuolar membrane	4.23E-02
36	GO:0048046: apoplast	4.49E-02