co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G09190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006907: pinocytosis	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0042352: GDP-L-fucose salvage	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0000819: sister chromatid segregation	0.00E+00
6	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
7	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
8	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
9	GO:0080127: fruit septum development	0.00E+00
10	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
11	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
12	GO:0043039: tRNA aminoacylation	2.21E-05
13	GO:0009733: response to auxin	3.02E-05
14	GO:0046620: regulation of organ growth	6.69E-05
15	GO:0009734: auxin-activated signaling pathway	1.06E-04
16	GO:0016556: mRNA modification	1.49E-04
17	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.17E-04
18	GO:0010583: response to cyclopentenone	3.37E-04
19	GO:0048497: maintenance of floral organ identity	3.76E-04
20	GO:0009658: chloroplast organization	4.70E-04
21	GO:0051641: cellular localization	7.22E-04
22	GO:0015904: tetracycline transport	7.22E-04
23	GO:0006434: seryl-tRNA aminoacylation	7.22E-04
24	GO:0010726: positive regulation of hydrogen peroxide metabolic process	7.22E-04
25	GO:0006438: valyl-tRNA aminoacylation	7.22E-04
26	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	7.22E-04
27	GO:0046520: sphingoid biosynthetic process	7.22E-04
28	GO:0046506: sulfolipid biosynthetic process	7.22E-04
29	GO:0032958: inositol phosphate biosynthetic process	7.22E-04
30	GO:0010480: microsporocyte differentiation	7.22E-04
31	GO:0006426: glycyl-tRNA aminoacylation	7.22E-04
32	GO:0009686: gibberellin biosynthetic process	1.04E-03
33	GO:0080009: mRNA methylation	1.56E-03
34	GO:0009786: regulation of asymmetric cell division	1.56E-03
35	GO:0031648: protein destabilization	1.56E-03
36	GO:2000123: positive regulation of stomatal complex development	1.56E-03
37	GO:1901529: positive regulation of anion channel activity	1.56E-03
38	GO:0080005: photosystem stoichiometry adjustment	1.56E-03
39	GO:0061062: regulation of nematode larval development	1.56E-03
40	GO:0006423: cysteinyl-tRNA aminoacylation	1.56E-03
41	GO:0018026: peptidyl-lysine monomethylation	1.56E-03
42	GO:1900865: chloroplast RNA modification	1.90E-03
43	GO:0048829: root cap development	2.22E-03
44	GO:0006949: syncytium formation	2.22E-03
45	GO:0006782: protoporphyrinogen IX biosynthetic process	2.22E-03
46	GO:0006351: transcription, DNA-templated	2.48E-03
47	GO:0048575: short-day photoperiodism, flowering	2.57E-03
48	GO:0045910: negative regulation of DNA recombination	2.57E-03
49	GO:0090506: axillary shoot meristem initiation	2.57E-03
50	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	2.57E-03
51	GO:0005983: starch catabolic process	2.95E-03
52	GO:0010588: cotyledon vascular tissue pattern formation	3.36E-03
53	GO:0009793: embryo development ending in seed dormancy	3.39E-03
54	GO:0010321: regulation of vegetative phase change	3.75E-03
55	GO:0006020: inositol metabolic process	3.75E-03
56	GO:0007276: gamete generation	3.75E-03
57	GO:0006424: glutamyl-tRNA aminoacylation	3.75E-03
58	GO:0009887: animal organ morphogenesis	3.80E-03
59	GO:0010020: chloroplast fission	3.80E-03
60	GO:0009755: hormone-mediated signaling pathway	5.06E-03
61	GO:0048629: trichome patterning	5.06E-03
62	GO:0000914: phragmoplast assembly	5.06E-03
63	GO:0031122: cytoplasmic microtubule organization	5.06E-03
64	GO:2000038: regulation of stomatal complex development	5.06E-03
65	GO:0042991: transcription factor import into nucleus	5.06E-03
66	GO:0007020: microtubule nucleation	5.06E-03
67	GO:0019953: sexual reproduction	5.84E-03
68	GO:0006418: tRNA aminoacylation for protein translation	5.84E-03
69	GO:0009107: lipoate biosynthetic process	6.51E-03
70	GO:0007094: mitotic spindle assembly checkpoint	6.51E-03
71	GO:0010438: cellular response to sulfur starvation	6.51E-03
72	GO:0010375: stomatal complex patterning	6.51E-03
73	GO:0009247: glycolipid biosynthetic process	6.51E-03
74	GO:0046785: microtubule polymerization	6.51E-03
75	GO:0045487: gibberellin catabolic process	6.51E-03
76	GO:0007005: mitochondrion organization	7.05E-03
77	GO:0006355: regulation of transcription, DNA-templated	7.13E-03
78	GO:0010942: positive regulation of cell death	8.08E-03
79	GO:0010405: arabinogalactan protein metabolic process	8.08E-03
80	GO:0009913: epidermal cell differentiation	8.08E-03
81	GO:0016554: cytidine to uridine editing	8.08E-03
82	GO:1902456: regulation of stomatal opening	8.08E-03
83	GO:0042793: transcription from plastid promoter	8.08E-03
84	GO:0003006: developmental process involved in reproduction	8.08E-03
85	GO:0018258: protein O-linked glycosylation via hydroxyproline	8.08E-03
86	GO:0042127: regulation of cell proliferation	8.39E-03
87	GO:0009926: auxin polar transport	8.74E-03
88	GO:0006468: protein phosphorylation	9.70E-03
89	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	9.78E-03
90	GO:0009082: branched-chain amino acid biosynthetic process	9.78E-03
91	GO:0031930: mitochondria-nucleus signaling pathway	9.78E-03
92	GO:0009099: valine biosynthetic process	9.78E-03
93	GO:0030488: tRNA methylation	9.78E-03
94	GO:0040008: regulation of growth	1.03E-02
95	GO:0007018: microtubule-based movement	1.14E-02
96	GO:0010103: stomatal complex morphogenesis	1.16E-02
97	GO:0071555: cell wall organization	1.16E-02
98	GO:0000712: resolution of meiotic recombination intermediates	1.16E-02
99	GO:0045995: regulation of embryonic development	1.16E-02
100	GO:1900056: negative regulation of leaf senescence	1.16E-02
101	GO:0030497: fatty acid elongation	1.16E-02
102	GO:0048437: floral organ development	1.16E-02
103	GO:0010098: suspensor development	1.16E-02
104	GO:0010444: guard mother cell differentiation	1.16E-02
105	GO:0000082: G1/S transition of mitotic cell cycle	1.16E-02
106	GO:0009664: plant-type cell wall organization	1.17E-02
107	GO:0048825: cotyledon development	1.23E-02
108	GO:0009736: cytokinin-activated signaling pathway	1.28E-02
109	GO:0071554: cell wall organization or biogenesis	1.32E-02
110	GO:0010492: maintenance of shoot apical meristem identity	1.35E-02
111	GO:0000105: histidine biosynthetic process	1.35E-02
112	GO:0006402: mRNA catabolic process	1.35E-02
113	GO:0010439: regulation of glucosinolate biosynthetic process	1.35E-02
114	GO:0001522: pseudouridine synthesis	1.35E-02
115	GO:0009819: drought recovery	1.35E-02
116	GO:0042255: ribosome assembly	1.35E-02
117	GO:0006353: DNA-templated transcription, termination	1.35E-02
118	GO:0009704: de-etiolation	1.35E-02
119	GO:2000070: regulation of response to water deprivation	1.35E-02
120	GO:0009657: plastid organization	1.56E-02
121	GO:0009097: isoleucine biosynthetic process	1.56E-02
122	GO:0009828: plant-type cell wall loosening	1.60E-02
123	GO:0048367: shoot system development	1.65E-02
124	GO:0016042: lipid catabolic process	1.70E-02
125	GO:0009056: catabolic process	1.77E-02
126	GO:0051865: protein autoubiquitination	1.77E-02
127	GO:0010332: response to gamma radiation	1.77E-02
128	GO:0048507: meristem development	1.77E-02
129	GO:0048589: developmental growth	1.77E-02
130	GO:0000910: cytokinesis	1.81E-02
131	GO:0048364: root development	1.92E-02
132	GO:0010027: thylakoid membrane organization	1.92E-02
133	GO:0005982: starch metabolic process	1.99E-02
134	GO:0006779: porphyrin-containing compound biosynthetic process	1.99E-02
135	GO:0009098: leucine biosynthetic process	1.99E-02
136	GO:0007346: regulation of mitotic cell cycle	1.99E-02
137	GO:0031425: chloroplast RNA processing	1.99E-02
138	GO:0009624: response to nematode	2.01E-02
139	GO:0009641: shade avoidance	2.23E-02
140	GO:0006298: mismatch repair	2.23E-02
141	GO:0006259: DNA metabolic process	2.23E-02
142	GO:0015995: chlorophyll biosynthetic process	2.26E-02
143	GO:0016311: dephosphorylation	2.38E-02
144	GO:0006265: DNA topological change	2.47E-02
145	GO:0009682: induced systemic resistance	2.47E-02
146	GO:0008285: negative regulation of cell proliferation	2.47E-02
147	GO:0009750: response to fructose	2.47E-02
148	GO:0048229: gametophyte development	2.47E-02
149	GO:0048481: plant ovule development	2.50E-02
150	GO:0000160: phosphorelay signal transduction system	2.63E-02
151	GO:0010311: lateral root formation	2.63E-02
152	GO:0006312: mitotic recombination	2.72E-02
153	GO:0012501: programmed cell death	2.72E-02
154	GO:0048366: leaf development	2.72E-02
155	GO:0010152: pollen maturation	2.72E-02
156	GO:0045037: protein import into chloroplast stroma	2.72E-02
157	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.72E-02
158	GO:0010582: floral meristem determinacy	2.72E-02
159	GO:0010075: regulation of meristem growth	2.98E-02
160	GO:0009767: photosynthetic electron transport chain	2.98E-02
161	GO:0030048: actin filament-based movement	2.98E-02
162	GO:0010102: lateral root morphogenesis	2.98E-02
163	GO:0010628: positive regulation of gene expression	2.98E-02
164	GO:0009691: cytokinin biosynthetic process	2.98E-02
165	GO:2000028: regulation of photoperiodism, flowering	2.98E-02
166	GO:0006865: amino acid transport	3.04E-02
167	GO:0009790: embryo development	3.24E-02
168	GO:0009934: regulation of meristem structural organization	3.25E-02
169	GO:0006302: double-strand break repair	3.25E-02
170	GO:0048768: root hair cell tip growth	3.25E-02
171	GO:0048467: gynoecium development	3.25E-02
172	GO:0007034: vacuolar transport	3.25E-02
173	GO:0010223: secondary shoot formation	3.25E-02
174	GO:0090351: seedling development	3.53E-02
175	GO:0006863: purine nucleobase transport	3.81E-02
176	GO:0000162: tryptophan biosynthetic process	3.81E-02
177	GO:0006636: unsaturated fatty acid biosynthetic process	3.81E-02
178	GO:0045892: negative regulation of transcription, DNA-templated	3.90E-02
179	GO:0009744: response to sucrose	4.09E-02
180	GO:0005992: trehalose biosynthetic process	4.10E-02
181	GO:0051017: actin filament bundle assembly	4.10E-02
182	GO:0042546: cell wall biogenesis	4.25E-02
183	GO:0009739: response to gibberellin	4.57E-02
184	GO:0009416: response to light stimulus	4.64E-02
185	GO:0006470: protein dephosphorylation	4.69E-02
186	GO:0051321: meiotic cell cycle	4.70E-02
187	GO:0016114: terpenoid biosynthetic process	4.70E-02
188	GO:0003333: amino acid transmembrane transport	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
4	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
5	GO:0071633: dihydroceramidase activity	0.00E+00
6	GO:0051752: phosphoglucan, water dikinase activity	0.00E+00
7	GO:0050201: fucokinase activity	0.00E+00
8	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
9	GO:0046510: UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity	0.00E+00
10	GO:0047661: amino-acid racemase activity	0.00E+00
11	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
12	GO:0001872: (1->3)-beta-D-glucan binding	1.49E-04
13	GO:0004519: endonuclease activity	6.73E-04
14	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	7.22E-04
15	GO:0000170: sphingosine hydroxylase activity	7.22E-04
16	GO:0000829: inositol heptakisphosphate kinase activity	7.22E-04
17	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	7.22E-04
18	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	7.22E-04
19	GO:0004828: serine-tRNA ligase activity	7.22E-04
20	GO:0004818: glutamate-tRNA ligase activity	7.22E-04
21	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	7.22E-04
22	GO:0000828: inositol hexakisphosphate kinase activity	7.22E-04
23	GO:0052381: tRNA dimethylallyltransferase activity	7.22E-04
24	GO:0004160: dihydroxy-acid dehydratase activity	7.22E-04
25	GO:0004832: valine-tRNA ligase activity	7.22E-04
26	GO:0004820: glycine-tRNA ligase activity	7.22E-04
27	GO:0004176: ATP-dependent peptidase activity	8.34E-04
28	GO:0005524: ATP binding	1.09E-03
29	GO:0017118: lipoyltransferase activity	1.56E-03
30	GO:0003852: 2-isopropylmalate synthase activity	1.56E-03
31	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.56E-03
32	GO:0010296: prenylcysteine methylesterase activity	1.56E-03
33	GO:0016415: octanoyltransferase activity	1.56E-03
34	GO:0004817: cysteine-tRNA ligase activity	1.56E-03
35	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.56E-03
36	GO:0004109: coproporphyrinogen oxidase activity	1.56E-03
37	GO:0042284: sphingolipid delta-4 desaturase activity	1.56E-03
38	GO:0008493: tetracycline transporter activity	1.56E-03
39	GO:0019156: isoamylase activity	1.56E-03
40	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.56E-03
41	GO:0019200: carbohydrate kinase activity	1.56E-03
42	GO:0043621: protein self-association	1.98E-03
43	GO:0008237: metallopeptidase activity	2.84E-03
44	GO:0003777: microtubule motor activity	3.25E-03
45	GO:0045544: gibberellin 20-oxidase activity	3.75E-03
46	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.75E-03
47	GO:0003916: DNA topoisomerase activity	3.75E-03
48	GO:0004674: protein serine/threonine kinase activity	3.94E-03
49	GO:0004722: protein serine/threonine phosphatase activity	4.59E-03
50	GO:0016887: ATPase activity	4.71E-03
51	GO:0004335: galactokinase activity	5.06E-03
52	GO:0016279: protein-lysine N-methyltransferase activity	5.06E-03
53	GO:0010011: auxin binding	5.06E-03
54	GO:0016836: hydro-lyase activity	5.06E-03
55	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	5.06E-03
56	GO:0019199: transmembrane receptor protein kinase activity	5.06E-03
57	GO:0008408: 3'-5' exonuclease activity	6.43E-03
58	GO:0033612: receptor serine/threonine kinase binding	6.43E-03
59	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	6.51E-03
60	GO:2001070: starch binding	8.08E-03
61	GO:0030983: mismatched DNA binding	8.08E-03
62	GO:1990714: hydroxyproline O-galactosyltransferase activity	8.08E-03
63	GO:0004709: MAP kinase kinase kinase activity	8.08E-03
64	GO:0004556: alpha-amylase activity	8.08E-03
65	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.91E-03
66	GO:0004812: aminoacyl-tRNA ligase activity	9.10E-03
67	GO:0043565: sequence-specific DNA binding	9.12E-03
68	GO:0016832: aldehyde-lyase activity	9.78E-03
69	GO:0003723: RNA binding	1.00E-02
70	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.06E-02
71	GO:0001085: RNA polymerase II transcription factor binding	1.06E-02
72	GO:0052689: carboxylic ester hydrolase activity	1.08E-02
73	GO:0016853: isomerase activity	1.14E-02
74	GO:0004518: nuclease activity	1.41E-02
75	GO:0051015: actin filament binding	1.50E-02
76	GO:0000156: phosphorelay response regulator activity	1.50E-02
77	GO:0008173: RNA methyltransferase activity	1.56E-02
78	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.56E-02
79	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.56E-02
80	GO:0016791: phosphatase activity	1.60E-02
81	GO:0016413: O-acetyltransferase activity	1.81E-02
82	GO:0003779: actin binding	1.94E-02
83	GO:0009055: electron carrier activity	2.01E-02
84	GO:0016788: hydrolase activity, acting on ester bonds	2.19E-02
85	GO:0004805: trehalose-phosphatase activity	2.23E-02
86	GO:0030247: polysaccharide binding	2.26E-02
87	GO:0005515: protein binding	2.36E-02
88	GO:0000049: tRNA binding	2.72E-02
89	GO:0016301: kinase activity	2.73E-02
90	GO:0004672: protein kinase activity	2.75E-02
91	GO:0004222: metalloendopeptidase activity	2.76E-02
92	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.90E-02
93	GO:0009982: pseudouridine synthase activity	2.98E-02
94	GO:0003725: double-stranded RNA binding	2.98E-02
95	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.98E-02
96	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.14E-02
97	GO:0003774: motor activity	3.25E-02
98	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.25E-02
99	GO:0004190: aspartic-type endopeptidase activity	3.53E-02
100	GO:0008061: chitin binding	3.53E-02
101	GO:0003712: transcription cofactor activity	3.53E-02
102	GO:0042803: protein homodimerization activity	4.08E-02
103	GO:0008017: microtubule binding	4.21E-02
104	GO:0005345: purine nucleobase transmembrane transporter activity	4.40E-02
105	GO:0005198: structural molecule activity	4.59E-02
106	GO:0010333: terpene synthase activity	4.70E-02
107	GO:0008094: DNA-dependent ATPase activity	4.70E-02
108	GO:0004707: MAP kinase activity	4.70E-02
109	GO:0003964: RNA-directed DNA polymerase activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0000791: euchromatin	7.22E-04
4	GO:0009507: chloroplast	1.36E-03
5	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.56E-03
6	GO:0009569: chloroplast starch grain	1.56E-03
7	GO:0031357: integral component of chloroplast inner membrane	1.56E-03
8	GO:0030870: Mre11 complex	1.56E-03
9	GO:0009941: chloroplast envelope	1.58E-03
10	GO:0008287: protein serine/threonine phosphatase complex	2.57E-03
11	GO:0030139: endocytic vesicle	2.57E-03
12	GO:0009536: plastid	3.09E-03
13	GO:0005886: plasma membrane	3.33E-03
14	GO:0009531: secondary cell wall	3.75E-03
15	GO:0032585: multivesicular body membrane	3.75E-03
16	GO:0046658: anchored component of plasma membrane	4.73E-03
17	GO:0000930: gamma-tubulin complex	5.06E-03
18	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	5.06E-03
19	GO:0005828: kinetochore microtubule	5.06E-03
20	GO:0009570: chloroplast stroma	5.39E-03
21	GO:0000795: synaptonemal complex	6.51E-03
22	GO:0000776: kinetochore	6.51E-03
23	GO:0015629: actin cytoskeleton	7.70E-03
24	GO:0005874: microtubule	8.55E-03
25	GO:0005871: kinesin complex	9.10E-03
26	GO:0000815: ESCRT III complex	9.78E-03
27	GO:0010369: chromocenter	9.78E-03
28	GO:0000777: condensed chromosome kinetochore	9.78E-03
29	GO:0009986: cell surface	1.16E-02
30	GO:0005876: spindle microtubule	1.99E-02
31	GO:0005667: transcription factor complex	2.14E-02
32	GO:0016459: myosin complex	2.23E-02
33	GO:0005884: actin filament	2.47E-02
34	GO:0009534: chloroplast thylakoid	2.52E-02
35	GO:0009508: plastid chromosome	2.98E-02
36	GO:0005938: cell cortex	2.98E-02
37	GO:0030095: chloroplast photosystem II	3.25E-02
38	GO:0005875: microtubule associated complex	3.81E-02
39	GO:0031225: anchored component of membrane	4.04E-02
40	GO:0009654: photosystem II oxygen evolving complex	4.40E-02
41	GO:0005856: cytoskeleton	4.59E-02