co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G09162

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051924: regulation of calcium ion transport	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:1905157: positive regulation of photosynthesis	0.00E+00
5	GO:0097275: cellular ammonia homeostasis	0.00E+00
6	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
7	GO:0043488: regulation of mRNA stability	0.00E+00
8	GO:0009658: chloroplast organization	3.26E-06
9	GO:0080112: seed growth	2.25E-04
10	GO:0000476: maturation of 4.5S rRNA	2.25E-04
11	GO:0000967: rRNA 5'-end processing	2.25E-04
12	GO:1905039: carboxylic acid transmembrane transport	2.25E-04
13	GO:1905200: gibberellic acid transmembrane transport	2.25E-04
14	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	2.25E-04
15	GO:0043686: co-translational protein modification	2.25E-04
16	GO:0043007: maintenance of rDNA	2.25E-04
17	GO:0032502: developmental process	2.45E-04
18	GO:1901657: glycosyl compound metabolic process	2.67E-04
19	GO:0009773: photosynthetic electron transport in photosystem I	4.76E-04
20	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.00E-04
21	GO:0018026: peptidyl-lysine monomethylation	5.00E-04
22	GO:1900033: negative regulation of trichome patterning	5.00E-04
23	GO:1904143: positive regulation of carotenoid biosynthetic process	5.00E-04
24	GO:0006568: tryptophan metabolic process	5.00E-04
25	GO:0034470: ncRNA processing	5.00E-04
26	GO:0006954: inflammatory response	8.13E-04
27	GO:0034051: negative regulation of plant-type hypersensitive response	8.13E-04
28	GO:0006696: ergosterol biosynthetic process	8.13E-04
29	GO:0005977: glycogen metabolic process	8.13E-04
30	GO:0080147: root hair cell development	9.55E-04
31	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.16E-03
32	GO:0006168: adenine salvage	1.16E-03
33	GO:0006855: drug transmembrane transport	1.16E-03
34	GO:0045338: farnesyl diphosphate metabolic process	1.16E-03
35	GO:0006166: purine ribonucleoside salvage	1.16E-03
36	GO:0009152: purine ribonucleotide biosynthetic process	1.16E-03
37	GO:0010601: positive regulation of auxin biosynthetic process	1.16E-03
38	GO:0046653: tetrahydrofolate metabolic process	1.16E-03
39	GO:0010107: potassium ion import	1.54E-03
40	GO:0010021: amylopectin biosynthetic process	1.54E-03
41	GO:0048629: trichome patterning	1.54E-03
42	GO:0009765: photosynthesis, light harvesting	1.54E-03
43	GO:0005975: carbohydrate metabolic process	1.57E-03
44	GO:0032543: mitochondrial translation	1.97E-03
45	GO:0098719: sodium ion import across plasma membrane	1.97E-03
46	GO:0006564: L-serine biosynthetic process	1.97E-03
47	GO:0031365: N-terminal protein amino acid modification	1.97E-03
48	GO:0044209: AMP salvage	1.97E-03
49	GO:0019252: starch biosynthetic process	2.15E-03
50	GO:0009416: response to light stimulus	2.27E-03
51	GO:0000741: karyogamy	2.43E-03
52	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.43E-03
53	GO:0009643: photosynthetic acclimation	2.43E-03
54	GO:1901259: chloroplast rRNA processing	2.91E-03
55	GO:0048280: vesicle fusion with Golgi apparatus	2.91E-03
56	GO:0009955: adaxial/abaxial pattern specification	2.91E-03
57	GO:0009769: photosynthesis, light harvesting in photosystem II	3.43E-03
58	GO:0009645: response to low light intensity stimulus	3.43E-03
59	GO:1900056: negative regulation of leaf senescence	3.43E-03
60	GO:0048437: floral organ development	3.43E-03
61	GO:0042255: ribosome assembly	3.98E-03
62	GO:0046620: regulation of organ growth	3.98E-03
63	GO:0006353: DNA-templated transcription, termination	3.98E-03
64	GO:0010078: maintenance of root meristem identity	3.98E-03
65	GO:0055075: potassium ion homeostasis	3.98E-03
66	GO:0052543: callose deposition in cell wall	3.98E-03
67	GO:0009657: plastid organization	4.56E-03
68	GO:0043562: cellular response to nitrogen levels	4.56E-03
69	GO:0009821: alkaloid biosynthetic process	5.16E-03
70	GO:0090333: regulation of stomatal closure	5.16E-03
71	GO:0046685: response to arsenic-containing substance	5.16E-03
72	GO:0034599: cellular response to oxidative stress	5.71E-03
73	GO:0010380: regulation of chlorophyll biosynthetic process	5.79E-03
74	GO:0031425: chloroplast RNA processing	5.79E-03
75	GO:0051453: regulation of intracellular pH	5.79E-03
76	GO:0009638: phototropism	5.79E-03
77	GO:0006896: Golgi to vacuole transport	6.45E-03
78	GO:0016441: posttranscriptional gene silencing	6.45E-03
79	GO:0051707: response to other organism	7.04E-03
80	GO:0015770: sucrose transport	7.13E-03
81	GO:0006415: translational termination	7.13E-03
82	GO:0072593: reactive oxygen species metabolic process	7.13E-03
83	GO:0009684: indoleacetic acid biosynthetic process	7.13E-03
84	GO:0010015: root morphogenesis	7.13E-03
85	GO:0009698: phenylpropanoid metabolic process	7.13E-03
86	GO:0010628: positive regulation of gene expression	8.57E-03
87	GO:0010588: cotyledon vascular tissue pattern formation	8.57E-03
88	GO:0048467: gynoecium development	9.33E-03
89	GO:0035556: intracellular signal transduction	9.73E-03
90	GO:0009901: anther dehiscence	1.01E-02
91	GO:0019853: L-ascorbic acid biosynthetic process	1.01E-02
92	GO:0006857: oligopeptide transport	1.02E-02
93	GO:0019762: glucosinolate catabolic process	1.09E-02
94	GO:0048367: shoot system development	1.16E-02
95	GO:0009768: photosynthesis, light harvesting in photosystem I	1.26E-02
96	GO:0006418: tRNA aminoacylation for protein translation	1.26E-02
97	GO:0019915: lipid storage	1.34E-02
98	GO:0009269: response to desiccation	1.34E-02
99	GO:0006730: one-carbon metabolic process	1.43E-02
100	GO:0031348: negative regulation of defense response	1.43E-02
101	GO:0006012: galactose metabolic process	1.53E-02
102	GO:0016042: lipid catabolic process	1.58E-02
103	GO:0009306: protein secretion	1.62E-02
104	GO:0016117: carotenoid biosynthetic process	1.71E-02
105	GO:0042147: retrograde transport, endosome to Golgi	1.71E-02
106	GO:0009058: biosynthetic process	1.79E-02
107	GO:0080022: primary root development	1.81E-02
108	GO:0010087: phloem or xylem histogenesis	1.81E-02
109	GO:0009958: positive gravitropism	1.91E-02
110	GO:0006885: regulation of pH	1.91E-02
111	GO:0006662: glycerol ether metabolic process	1.91E-02
112	GO:0010197: polar nucleus fusion	1.91E-02
113	GO:0009741: response to brassinosteroid	1.91E-02
114	GO:0006814: sodium ion transport	2.01E-02
115	GO:0009646: response to absence of light	2.01E-02
116	GO:0048825: cotyledon development	2.11E-02
117	GO:0009556: microsporogenesis	2.11E-02
118	GO:0009851: auxin biosynthetic process	2.11E-02
119	GO:0006623: protein targeting to vacuole	2.11E-02
120	GO:0006891: intra-Golgi vesicle-mediated transport	2.22E-02
121	GO:0010583: response to cyclopentenone	2.32E-02
122	GO:0010150: leaf senescence	2.35E-02
123	GO:0010228: vegetative to reproductive phase transition of meristem	2.46E-02
124	GO:0010252: auxin homeostasis	2.54E-02
125	GO:0010027: thylakoid membrane organization	2.88E-02
126	GO:0016126: sterol biosynthetic process	2.88E-02
127	GO:0009607: response to biotic stimulus	3.00E-02
128	GO:0006888: ER to Golgi vesicle-mediated transport	3.24E-02
129	GO:0009555: pollen development	3.35E-02
130	GO:0016311: dephosphorylation	3.36E-02
131	GO:0018298: protein-chromophore linkage	3.48E-02
132	GO:0015031: protein transport	3.66E-02
133	GO:0010218: response to far red light	3.73E-02
134	GO:0048527: lateral root development	3.86E-02
135	GO:0009910: negative regulation of flower development	3.86E-02
136	GO:0006865: amino acid transport	3.99E-02
137	GO:0016051: carbohydrate biosynthetic process	4.12E-02
138	GO:0009637: response to blue light	4.12E-02
139	GO:0009853: photorespiration	4.12E-02
140	GO:0009723: response to ethylene	4.19E-02
141	GO:0048366: leaf development	4.27E-02
142	GO:0008283: cell proliferation	4.93E-02
143	GO:0010114: response to red light	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0004823: leucine-tRNA ligase activity	0.00E+00
2	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
3	GO:0090711: FMN hydrolase activity	0.00E+00
4	GO:0042586: peptide deformylase activity	2.25E-04
5	GO:0004856: xylulokinase activity	2.25E-04
6	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.25E-04
7	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.25E-04
8	GO:1905201: gibberellin transmembrane transporter activity	2.25E-04
9	GO:0102483: scopolin beta-glucosidase activity	4.54E-04
10	GO:0015386: potassium:proton antiporter activity	4.76E-04
11	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.00E-04
12	GO:0019156: isoamylase activity	5.00E-04
13	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.00E-04
14	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.00E-04
15	GO:0004617: phosphoglycerate dehydrogenase activity	5.00E-04
16	GO:0015238: drug transmembrane transporter activity	5.51E-04
17	GO:0008422: beta-glucosidase activity	7.81E-04
18	GO:0003913: DNA photolyase activity	8.13E-04
19	GO:0002161: aminoacyl-tRNA editing activity	8.13E-04
20	GO:0004148: dihydrolipoyl dehydrogenase activity	8.13E-04
21	GO:0004751: ribose-5-phosphate isomerase activity	8.13E-04
22	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	8.13E-04
23	GO:0008864: formyltetrahydrofolate deformylase activity	8.13E-04
24	GO:0003999: adenine phosphoribosyltransferase activity	1.16E-03
25	GO:0022890: inorganic cation transmembrane transporter activity	1.16E-03
26	GO:0009011: starch synthase activity	1.54E-03
27	GO:0016279: protein-lysine N-methyltransferase activity	1.54E-03
28	GO:0080032: methyl jasmonate esterase activity	1.54E-03
29	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.97E-03
30	GO:0005275: amine transmembrane transporter activity	1.97E-03
31	GO:0016846: carbon-sulfur lyase activity	1.97E-03
32	GO:0035673: oligopeptide transmembrane transporter activity	2.43E-03
33	GO:0004556: alpha-amylase activity	2.43E-03
34	GO:0015081: sodium ion transmembrane transporter activity	2.43E-03
35	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	2.43E-03
36	GO:0008200: ion channel inhibitor activity	2.43E-03
37	GO:0080030: methyl indole-3-acetate esterase activity	2.43E-03
38	GO:0004629: phospholipase C activity	2.43E-03
39	GO:0003730: mRNA 3'-UTR binding	2.91E-03
40	GO:0004435: phosphatidylinositol phospholipase C activity	2.91E-03
41	GO:0008195: phosphatidate phosphatase activity	2.91E-03
42	GO:0004871: signal transducer activity	2.93E-03
43	GO:0004033: aldo-keto reductase (NADP) activity	3.98E-03
44	GO:0015297: antiporter activity	4.09E-03
45	GO:0071949: FAD binding	5.16E-03
46	GO:0003747: translation release factor activity	5.16E-03
47	GO:0016207: 4-coumarate-CoA ligase activity	5.16E-03
48	GO:0003993: acid phosphatase activity	5.71E-03
49	GO:0016844: strictosidine synthase activity	5.79E-03
50	GO:0030234: enzyme regulator activity	6.45E-03
51	GO:0015020: glucuronosyltransferase activity	6.45E-03
52	GO:0008515: sucrose transmembrane transporter activity	7.13E-03
53	GO:0008559: xenobiotic-transporting ATPase activity	7.13E-03
54	GO:0016788: hydrolase activity, acting on ester bonds	7.75E-03
55	GO:0015198: oligopeptide transporter activity	7.84E-03
56	GO:0003725: double-stranded RNA binding	8.57E-03
57	GO:0004022: alcohol dehydrogenase (NAD) activity	8.57E-03
58	GO:0004089: carbonate dehydratase activity	8.57E-03
59	GO:0005215: transporter activity	9.30E-03
60	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.33E-03
61	GO:0051119: sugar transmembrane transporter activity	1.01E-02
62	GO:0031409: pigment binding	1.09E-02
63	GO:0005528: FK506 binding	1.17E-02
64	GO:0015079: potassium ion transmembrane transporter activity	1.26E-02
65	GO:0003727: single-stranded RNA binding	1.62E-02
66	GO:0008514: organic anion transmembrane transporter activity	1.62E-02
67	GO:0019843: rRNA binding	1.70E-02
68	GO:0047134: protein-disulfide reductase activity	1.71E-02
69	GO:0004812: aminoacyl-tRNA ligase activity	1.71E-02
70	GO:0004252: serine-type endopeptidase activity	1.89E-02
71	GO:0003713: transcription coactivator activity	1.91E-02
72	GO:0015299: solute:proton antiporter activity	2.01E-02
73	GO:0004791: thioredoxin-disulfide reductase activity	2.01E-02
74	GO:0008565: protein transporter activity	2.04E-02
75	GO:0015385: sodium:proton antiporter activity	2.43E-02
76	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.43E-02
77	GO:0016597: amino acid binding	2.77E-02
78	GO:0003824: catalytic activity	2.96E-02
79	GO:0016168: chlorophyll binding	3.00E-02
80	GO:0008375: acetylglucosaminyltransferase activity	3.12E-02
81	GO:0004601: peroxidase activity	3.63E-02
82	GO:0000149: SNARE binding	4.39E-02
83	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.39E-02
84	GO:0004497: monooxygenase activity	4.49E-02
85	GO:0004672: protein kinase activity	4.51E-02
86	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.71E-02
87	GO:0005484: SNAP receptor activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.09E-08
2	GO:0009570: chloroplast stroma	6.29E-06
3	GO:0031969: chloroplast membrane	6.39E-05
4	GO:0009535: chloroplast thylakoid membrane	3.75E-04
5	GO:0033281: TAT protein transport complex	8.13E-04
6	GO:0009517: PSII associated light-harvesting complex II	1.54E-03
7	GO:0009840: chloroplastic endopeptidase Clp complex	2.91E-03
8	GO:0012507: ER to Golgi transport vesicle membrane	3.98E-03
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.16E-03
10	GO:0031902: late endosome membrane	6.49E-03
11	GO:0009508: plastid chromosome	8.57E-03
12	GO:0030076: light-harvesting complex	1.01E-02
13	GO:0009534: chloroplast thylakoid	1.19E-02
14	GO:0009532: plastid stroma	1.34E-02
15	GO:0009543: chloroplast thylakoid lumen	1.70E-02
16	GO:0005770: late endosome	1.91E-02
17	GO:0009522: photosystem I	2.01E-02
18	GO:0009523: photosystem II	2.11E-02
19	GO:0009705: plant-type vacuole membrane	2.35E-02
20	GO:0005887: integral component of plasma membrane	2.40E-02
21	GO:0009295: nucleoid	2.65E-02
22	GO:0009707: chloroplast outer membrane	3.48E-02
23	GO:0000325: plant-type vacuole	3.86E-02
24	GO:0031977: thylakoid lumen	4.66E-02
25	GO:0031201: SNARE complex	4.66E-02
26	GO:0005789: endoplasmic reticulum membrane	4.77E-02