co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G09150

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0010583: response to cyclopentenone	1.29E-04
4	GO:0034757: negative regulation of iron ion transport	1.62E-04
5	GO:0048829: root cap development	2.60E-04
6	GO:0045037: protein import into chloroplast stroma	3.48E-04
7	GO:0009786: regulation of asymmetric cell division	3.69E-04
8	GO:0010271: regulation of chlorophyll catabolic process	3.69E-04
9	GO:0001736: establishment of planar polarity	3.69E-04
10	GO:0009926: auxin polar transport	5.41E-04
11	GO:0009744: response to sucrose	5.41E-04
12	GO:0080117: secondary growth	6.04E-04
13	GO:0051604: protein maturation	6.04E-04
14	GO:0051513: regulation of monopolar cell growth	8.63E-04
15	GO:0051639: actin filament network formation	8.63E-04
16	GO:0034059: response to anoxia	8.63E-04
17	GO:0010239: chloroplast mRNA processing	8.63E-04
18	GO:0051764: actin crosslink formation	1.14E-03
19	GO:0009741: response to brassinosteroid	1.19E-03
20	GO:0009958: positive gravitropism	1.19E-03
21	GO:0009696: salicylic acid metabolic process	1.45E-03
22	GO:0048497: maintenance of floral organ identity	1.45E-03
23	GO:0010358: leaf shaping	1.78E-03
24	GO:0016554: cytidine to uridine editing	1.78E-03
25	GO:0009913: epidermal cell differentiation	1.78E-03
26	GO:1902456: regulation of stomatal opening	1.78E-03
27	GO:0048831: regulation of shoot system development	1.78E-03
28	GO:0003006: developmental process involved in reproduction	1.78E-03
29	GO:1901259: chloroplast rRNA processing	2.14E-03
30	GO:0009942: longitudinal axis specification	2.14E-03
31	GO:0048509: regulation of meristem development	2.14E-03
32	GO:0030488: tRNA methylation	2.14E-03
33	GO:1900056: negative regulation of leaf senescence	2.52E-03
34	GO:0000082: G1/S transition of mitotic cell cycle	2.52E-03
35	GO:0010444: guard mother cell differentiation	2.52E-03
36	GO:0000160: phosphorelay signal transduction system	2.87E-03
37	GO:0010311: lateral root formation	2.87E-03
38	GO:0046620: regulation of organ growth	2.91E-03
39	GO:0006353: DNA-templated transcription, termination	2.91E-03
40	GO:0009734: auxin-activated signaling pathway	3.12E-03
41	GO:0007186: G-protein coupled receptor signaling pathway	3.33E-03
42	GO:0010497: plasmodesmata-mediated intercellular transport	3.33E-03
43	GO:0007389: pattern specification process	3.33E-03
44	GO:0009056: catabolic process	3.77E-03
45	GO:0006098: pentose-phosphate shunt	3.77E-03
46	GO:0048507: meristem development	3.77E-03
47	GO:0000373: Group II intron splicing	3.77E-03
48	GO:0005982: starch metabolic process	4.22E-03
49	GO:0006779: porphyrin-containing compound biosynthetic process	4.22E-03
50	GO:1900865: chloroplast RNA modification	4.22E-03
51	GO:0042761: very long-chain fatty acid biosynthetic process	4.22E-03
52	GO:0009641: shade avoidance	4.69E-03
53	GO:0016441: posttranscriptional gene silencing	4.69E-03
54	GO:0006782: protoporphyrinogen IX biosynthetic process	4.69E-03
55	GO:0019538: protein metabolic process	4.69E-03
56	GO:0048765: root hair cell differentiation	5.19E-03
57	GO:0009750: response to fructose	5.19E-03
58	GO:0005983: starch catabolic process	5.69E-03
59	GO:0010582: floral meristem determinacy	5.69E-03
60	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.78E-03
61	GO:0009736: cytokinin-activated signaling pathway	5.99E-03
62	GO:0009725: response to hormone	6.22E-03
63	GO:0006094: gluconeogenesis	6.22E-03
64	GO:0048467: gynoecium development	6.76E-03
65	GO:0010025: wax biosynthetic process	7.90E-03
66	GO:0051017: actin filament bundle assembly	8.48E-03
67	GO:0003333: amino acid transmembrane transport	9.72E-03
68	GO:0035428: hexose transmembrane transport	1.04E-02
69	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.10E-02
70	GO:0071215: cellular response to abscisic acid stimulus	1.10E-02
71	GO:0006284: base-excision repair	1.17E-02
72	GO:0042127: regulation of cell proliferation	1.17E-02
73	GO:0070417: cellular response to cold	1.24E-02
74	GO:0010087: phloem or xylem histogenesis	1.31E-02
75	GO:0010118: stomatal movement	1.31E-02
76	GO:0010501: RNA secondary structure unwinding	1.31E-02
77	GO:0046323: glucose import	1.38E-02
78	GO:0010268: brassinosteroid homeostasis	1.38E-02
79	GO:0040008: regulation of growth	1.41E-02
80	GO:0007018: microtubule-based movement	1.45E-02
81	GO:0048544: recognition of pollen	1.45E-02
82	GO:0048825: cotyledon development	1.52E-02
83	GO:0009749: response to glucose	1.52E-02
84	GO:0009733: response to auxin	1.54E-02
85	GO:0016132: brassinosteroid biosynthetic process	1.60E-02
86	GO:0032502: developmental process	1.67E-02
87	GO:0031047: gene silencing by RNA	1.67E-02
88	GO:0006470: protein dephosphorylation	1.69E-02
89	GO:0016125: sterol metabolic process	1.83E-02
90	GO:0010252: auxin homeostasis	1.83E-02
91	GO:0009828: plant-type cell wall loosening	1.83E-02
92	GO:0051607: defense response to virus	1.99E-02
93	GO:0001666: response to hypoxia	2.07E-02
94	GO:0010027: thylakoid membrane organization	2.07E-02
95	GO:0010029: regulation of seed germination	2.16E-02
96	GO:0009826: unidimensional cell growth	2.21E-02
97	GO:0009627: systemic acquired resistance	2.24E-02
98	GO:0015995: chlorophyll biosynthetic process	2.33E-02
99	GO:0010411: xyloglucan metabolic process	2.33E-02
100	GO:0016311: dephosphorylation	2.42E-02
101	GO:0009817: defense response to fungus, incompatible interaction	2.51E-02
102	GO:0018298: protein-chromophore linkage	2.51E-02
103	GO:0007568: aging	2.78E-02
104	GO:0006865: amino acid transport	2.87E-02
105	GO:0009867: jasmonic acid mediated signaling pathway	2.97E-02
106	GO:0045892: negative regulation of transcription, DNA-templated	3.45E-02
107	GO:0000209: protein polyubiquitination	3.66E-02
108	GO:0042546: cell wall biogenesis	3.66E-02
109	GO:0009636: response to toxic substance	3.86E-02
110	GO:0009737: response to abscisic acid	3.95E-02
111	GO:0031347: regulation of defense response	4.07E-02
112	GO:0016042: lipid catabolic process	4.07E-02
113	GO:0009664: plant-type cell wall organization	4.18E-02
114	GO:0006281: DNA repair	4.18E-02
115	GO:0048364: root development	4.36E-02
116	GO:0009793: embryo development ending in seed dormancy	4.45E-02
117	GO:0071555: cell wall organization	4.52E-02
118	GO:0009909: regulation of flower development	4.72E-02
119	GO:0006096: glycolytic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0010012: steroid 22-alpha hydroxylase activity	1.62E-04
3	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.62E-04
4	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.62E-04
5	GO:0019203: carbohydrate phosphatase activity	1.62E-04
6	GO:0010296: prenylcysteine methylesterase activity	3.69E-04
7	GO:0009884: cytokinin receptor activity	3.69E-04
8	GO:0005034: osmosensor activity	6.04E-04
9	GO:0003913: DNA photolyase activity	6.04E-04
10	GO:0043424: protein histidine kinase binding	6.78E-04
11	GO:0080031: methyl salicylate esterase activity	8.63E-04
12	GO:0001872: (1->3)-beta-D-glucan binding	8.63E-04
13	GO:0010011: auxin binding	1.14E-03
14	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.14E-03
15	GO:0010328: auxin influx transmembrane transporter activity	1.14E-03
16	GO:0019199: transmembrane receptor protein kinase activity	1.14E-03
17	GO:0005471: ATP:ADP antiporter activity	1.45E-03
18	GO:0008725: DNA-3-methyladenine glycosylase activity	1.45E-03
19	GO:0080030: methyl indole-3-acetate esterase activity	1.78E-03
20	GO:0004332: fructose-bisphosphate aldolase activity	1.78E-03
21	GO:0019900: kinase binding	2.14E-03
22	GO:0004017: adenylate kinase activity	2.14E-03
23	GO:0030247: polysaccharide binding	2.47E-03
24	GO:0009881: photoreceptor activity	2.52E-03
25	GO:0008236: serine-type peptidase activity	2.60E-03
26	GO:0005096: GTPase activator activity	2.87E-03
27	GO:0003724: RNA helicase activity	3.33E-03
28	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.77E-03
29	GO:0009672: auxin:proton symporter activity	4.22E-03
30	GO:0004673: protein histidine kinase activity	4.69E-03
31	GO:0043621: protein self-association	4.81E-03
32	GO:0000155: phosphorelay sensor kinase activity	6.22E-03
33	GO:0010329: auxin efflux transmembrane transporter activity	6.22E-03
34	GO:0003712: transcription cofactor activity	7.32E-03
35	GO:0042803: protein homodimerization activity	7.38E-03
36	GO:0004722: protein serine/threonine phosphatase activity	7.82E-03
37	GO:0051536: iron-sulfur cluster binding	8.48E-03
38	GO:0051087: chaperone binding	9.09E-03
39	GO:0008565: protein transporter activity	1.28E-02
40	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.38E-02
41	GO:0005355: glucose transmembrane transporter activity	1.45E-02
42	GO:0004872: receptor activity	1.52E-02
43	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.60E-02
44	GO:0004518: nuclease activity	1.67E-02
45	GO:0051015: actin filament binding	1.75E-02
46	GO:0000156: phosphorelay response regulator activity	1.75E-02
47	GO:0016791: phosphatase activity	1.83E-02
48	GO:0042802: identical protein binding	1.88E-02
49	GO:0005515: protein binding	2.03E-02
50	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.33E-02
51	GO:0004721: phosphoprotein phosphatase activity	2.33E-02
52	GO:0004004: ATP-dependent RNA helicase activity	2.33E-02
53	GO:0016788: hydrolase activity, acting on ester bonds	2.34E-02
54	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.66E-02
55	GO:0003993: acid phosphatase activity	3.06E-02
56	GO:0052689: carboxylic ester hydrolase activity	3.14E-02
57	GO:0004871: signal transducer activity	3.56E-02
58	GO:0015293: symporter activity	3.86E-02
59	GO:0016298: lipase activity	4.50E-02
60	GO:0003690: double-stranded DNA binding	4.50E-02
61	GO:0005524: ATP binding	4.62E-02
62	GO:0003777: microtubule motor activity	4.72E-02
63	GO:0015171: amino acid transmembrane transporter activity	4.72E-02
64	GO:0031625: ubiquitin protein ligase binding	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0009986: cell surface	9.33E-05
2	GO:0030139: endocytic vesicle	6.04E-04
3	GO:0009507: chloroplast	8.00E-04
4	GO:0032585: multivesicular body membrane	8.63E-04
5	GO:0032432: actin filament bundle	8.63E-04
6	GO:0009526: plastid envelope	1.14E-03
7	GO:0055035: plastid thylakoid membrane	1.45E-03
8	GO:0010494: cytoplasmic stress granule	3.77E-03
9	GO:0009570: chloroplast stroma	5.05E-03
10	GO:0005884: actin filament	5.19E-03
11	GO:0005578: proteinaceous extracellular matrix	6.22E-03
12	GO:0030095: chloroplast photosystem II	6.76E-03
13	GO:0009706: chloroplast inner membrane	8.52E-03
14	GO:0009654: photosystem II oxygen evolving complex	9.09E-03
15	GO:0009532: plastid stroma	9.72E-03
16	GO:0005623: cell	1.10E-02
17	GO:0005871: kinesin complex	1.24E-02
18	GO:0019898: extrinsic component of membrane	1.52E-02
19	GO:0031965: nuclear membrane	1.52E-02
20	GO:0009941: chloroplast envelope	1.85E-02
21	GO:0046658: anchored component of plasma membrane	1.96E-02
22	GO:0005886: plasma membrane	2.56E-02
23	GO:0031977: thylakoid lumen	3.35E-02
24	GO:0090406: pollen tube	3.55E-02
25	GO:0009535: chloroplast thylakoid membrane	4.25E-02