co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G09050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:0010203: response to very low fluence red light stimulus	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0000372: Group I intron splicing	0.00E+00
7	GO:0090042: tubulin deacetylation	0.00E+00
8	GO:0006114: glycerol biosynthetic process	0.00E+00
9	GO:1905177: tracheary element differentiation	0.00E+00
10	GO:0008298: intracellular mRNA localization	0.00E+00
11	GO:2001141: regulation of RNA biosynthetic process	2.11E-05
12	GO:0010207: photosystem II assembly	3.80E-05
13	GO:0045038: protein import into chloroplast thylakoid membrane	6.16E-05
14	GO:0048564: photosystem I assembly	2.09E-04
15	GO:2000021: regulation of ion homeostasis	2.34E-04
16	GO:0000066: mitochondrial ornithine transport	2.34E-04
17	GO:0006419: alanyl-tRNA aminoacylation	2.34E-04
18	GO:0015969: guanosine tetraphosphate metabolic process	2.34E-04
19	GO:0031426: polycistronic mRNA processing	2.34E-04
20	GO:0000012: single strand break repair	2.34E-04
21	GO:0043266: regulation of potassium ion transport	2.34E-04
22	GO:0051775: response to redox state	2.34E-04
23	GO:0072387: flavin adenine dinucleotide metabolic process	2.34E-04
24	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.34E-04
25	GO:0043087: regulation of GTPase activity	2.34E-04
26	GO:0071482: cellular response to light stimulus	2.59E-04
27	GO:0009658: chloroplast organization	3.11E-04
28	GO:0000373: Group II intron splicing	3.13E-04
29	GO:0009638: phototropism	3.73E-04
30	GO:0006352: DNA-templated transcription, initiation	5.04E-04
31	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.20E-04
32	GO:0010343: singlet oxygen-mediated programmed cell death	5.20E-04
33	GO:1901529: positive regulation of anion channel activity	5.20E-04
34	GO:0060359: response to ammonium ion	5.20E-04
35	GO:1900871: chloroplast mRNA modification	5.20E-04
36	GO:0010617: circadian regulation of calcium ion oscillation	5.20E-04
37	GO:0006435: threonyl-tRNA aminoacylation	5.20E-04
38	GO:1901959: positive regulation of cutin biosynthetic process	5.20E-04
39	GO:0099402: plant organ development	5.20E-04
40	GO:0043157: response to cation stress	8.44E-04
41	GO:0005977: glycogen metabolic process	8.44E-04
42	GO:1902448: positive regulation of shade avoidance	8.44E-04
43	GO:1901672: positive regulation of systemic acquired resistance	8.44E-04
44	GO:1904278: positive regulation of wax biosynthetic process	8.44E-04
45	GO:0017006: protein-tetrapyrrole linkage	8.44E-04
46	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.44E-04
47	GO:0010623: programmed cell death involved in cell development	8.44E-04
48	GO:0006696: ergosterol biosynthetic process	8.44E-04
49	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.20E-03
50	GO:0006107: oxaloacetate metabolic process	1.20E-03
51	GO:0010239: chloroplast mRNA processing	1.20E-03
52	GO:0009584: detection of visible light	1.20E-03
53	GO:0033014: tetrapyrrole biosynthetic process	1.20E-03
54	GO:0009226: nucleotide-sugar biosynthetic process	1.20E-03
55	GO:1901332: negative regulation of lateral root development	1.20E-03
56	GO:0009793: embryo development ending in seed dormancy	1.49E-03
57	GO:0048442: sepal development	1.61E-03
58	GO:0051322: anaphase	1.61E-03
59	GO:0006661: phosphatidylinositol biosynthetic process	1.61E-03
60	GO:0045723: positive regulation of fatty acid biosynthetic process	1.61E-03
61	GO:0010508: positive regulation of autophagy	1.61E-03
62	GO:0006734: NADH metabolic process	1.61E-03
63	GO:1902347: response to strigolactone	1.61E-03
64	GO:0010021: amylopectin biosynthetic process	1.61E-03
65	GO:0016117: carotenoid biosynthetic process	1.70E-03
66	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.70E-03
67	GO:1902183: regulation of shoot apical meristem development	2.05E-03
68	GO:0016123: xanthophyll biosynthetic process	2.05E-03
69	GO:0010158: abaxial cell fate specification	2.05E-03
70	GO:0080110: sporopollenin biosynthetic process	2.05E-03
71	GO:0010117: photoprotection	2.05E-03
72	GO:0046283: anthocyanin-containing compound metabolic process	2.05E-03
73	GO:0010236: plastoquinone biosynthetic process	2.05E-03
74	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.52E-03
75	GO:0009959: negative gravitropism	2.52E-03
76	GO:0060918: auxin transport	2.52E-03
77	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.52E-03
78	GO:1901371: regulation of leaf morphogenesis	2.52E-03
79	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.52E-03
80	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.52E-03
81	GO:0009630: gravitropism	2.60E-03
82	GO:0010310: regulation of hydrogen peroxide metabolic process	3.03E-03
83	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.03E-03
84	GO:0010076: maintenance of floral meristem identity	3.03E-03
85	GO:0017148: negative regulation of translation	3.03E-03
86	GO:0010027: thylakoid membrane organization	3.51E-03
87	GO:0010161: red light signaling pathway	3.58E-03
88	GO:0009395: phospholipid catabolic process	3.58E-03
89	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.58E-03
90	GO:0006400: tRNA modification	3.58E-03
91	GO:0051510: regulation of unidimensional cell growth	3.58E-03
92	GO:0042255: ribosome assembly	4.15E-03
93	GO:0006353: DNA-templated transcription, termination	4.15E-03
94	GO:0006605: protein targeting	4.15E-03
95	GO:0070413: trehalose metabolism in response to stress	4.15E-03
96	GO:0018298: protein-chromophore linkage	4.57E-03
97	GO:0009657: plastid organization	4.74E-03
98	GO:0032544: plastid translation	4.74E-03
99	GO:0010218: response to far red light	5.04E-03
100	GO:0046685: response to arsenic-containing substance	5.37E-03
101	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.37E-03
102	GO:0010206: photosystem II repair	5.37E-03
103	GO:2000024: regulation of leaf development	5.37E-03
104	GO:0048507: meristem development	5.37E-03
105	GO:0006783: heme biosynthetic process	5.37E-03
106	GO:0009637: response to blue light	5.79E-03
107	GO:1900426: positive regulation of defense response to bacterium	6.03E-03
108	GO:0006779: porphyrin-containing compound biosynthetic process	6.03E-03
109	GO:0006259: DNA metabolic process	6.71E-03
110	GO:0048441: petal development	6.71E-03
111	GO:0006265: DNA topological change	7.43E-03
112	GO:0006415: translational termination	7.43E-03
113	GO:0010114: response to red light	7.46E-03
114	GO:0009640: photomorphogenesis	7.46E-03
115	GO:0009644: response to high light intensity	8.08E-03
116	GO:0045037: protein import into chloroplast stroma	8.17E-03
117	GO:0010075: regulation of meristem growth	8.93E-03
118	GO:0009767: photosynthetic electron transport chain	8.93E-03
119	GO:0009785: blue light signaling pathway	8.93E-03
120	GO:0006108: malate metabolic process	8.93E-03
121	GO:0042538: hyperosmotic salinity response	9.38E-03
122	GO:0009887: animal organ morphogenesis	9.72E-03
123	GO:0006302: double-strand break repair	9.72E-03
124	GO:0048440: carpel development	9.72E-03
125	GO:0009416: response to light stimulus	9.79E-03
126	GO:0090351: seedling development	1.05E-02
127	GO:0006096: glycolytic process	1.19E-02
128	GO:0005992: trehalose biosynthetic process	1.22E-02
129	GO:0009944: polarity specification of adaxial/abaxial axis	1.22E-02
130	GO:0006289: nucleotide-excision repair	1.22E-02
131	GO:2000377: regulation of reactive oxygen species metabolic process	1.22E-02
132	GO:0008299: isoprenoid biosynthetic process	1.31E-02
133	GO:0016575: histone deacetylation	1.31E-02
134	GO:0007017: microtubule-based process	1.31E-02
135	GO:0015992: proton transport	1.40E-02
136	GO:0010431: seed maturation	1.40E-02
137	GO:0031348: negative regulation of defense response	1.50E-02
138	GO:0006730: one-carbon metabolic process	1.50E-02
139	GO:0010089: xylem development	1.69E-02
140	GO:0010584: pollen exine formation	1.69E-02
141	GO:0048443: stamen development	1.69E-02
142	GO:0019722: calcium-mediated signaling	1.69E-02
143	GO:0009306: protein secretion	1.69E-02
144	GO:0006629: lipid metabolic process	1.76E-02
145	GO:0005975: carbohydrate metabolic process	1.78E-02
146	GO:0046686: response to cadmium ion	1.86E-02
147	GO:0010118: stomatal movement	1.89E-02
148	GO:0008033: tRNA processing	1.89E-02
149	GO:0048868: pollen tube development	1.99E-02
150	GO:0046323: glucose import	1.99E-02
151	GO:0010268: brassinosteroid homeostasis	1.99E-02
152	GO:0045489: pectin biosynthetic process	1.99E-02
153	GO:0010154: fruit development	1.99E-02
154	GO:0007018: microtubule-based movement	2.10E-02
155	GO:0042752: regulation of circadian rhythm	2.10E-02
156	GO:0007059: chromosome segregation	2.10E-02
157	GO:0009646: response to absence of light	2.10E-02
158	GO:0009791: post-embryonic development	2.20E-02
159	GO:0019252: starch biosynthetic process	2.20E-02
160	GO:0008654: phospholipid biosynthetic process	2.20E-02
161	GO:0016132: brassinosteroid biosynthetic process	2.31E-02
162	GO:0006413: translational initiation	2.32E-02
163	GO:0032502: developmental process	2.42E-02
164	GO:0010583: response to cyclopentenone	2.42E-02
165	GO:0016125: sterol metabolic process	2.65E-02
166	GO:0007267: cell-cell signaling	2.77E-02
167	GO:0007166: cell surface receptor signaling pathway	2.85E-02
168	GO:0000910: cytokinesis	2.89E-02
169	GO:0016126: sterol biosynthetic process	3.01E-02
170	GO:0010029: regulation of seed germination	3.13E-02
171	GO:0016311: dephosphorylation	3.50E-02
172	GO:0055114: oxidation-reduction process	4.13E-02
173	GO:0009853: photorespiration	4.30E-02
174	GO:0045087: innate immune response	4.30E-02
175	GO:0006099: tricarboxylic acid cycle	4.43E-02
176	GO:0006839: mitochondrial transport	4.71E-02
177	GO:0080167: response to karrikin	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
6	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
7	GO:0051721: protein phosphatase 2A binding	0.00E+00
8	GO:0050613: delta14-sterol reductase activity	0.00E+00
9	GO:0042903: tubulin deacetylase activity	0.00E+00
10	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
11	GO:0043014: alpha-tubulin binding	0.00E+00
12	GO:0046905: phytoene synthase activity	0.00E+00
13	GO:0001053: plastid sigma factor activity	3.85E-05
14	GO:0016987: sigma factor activity	3.85E-05
15	GO:0043022: ribosome binding	2.09E-04
16	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.34E-04
17	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.34E-04
18	GO:0004813: alanine-tRNA ligase activity	2.34E-04
19	GO:0005290: L-histidine transmembrane transporter activity	2.34E-04
20	GO:0004325: ferrochelatase activity	2.34E-04
21	GO:0051996: squalene synthase activity	2.34E-04
22	GO:0008746: NAD(P)+ transhydrogenase activity	2.34E-04
23	GO:0031516: far-red light photoreceptor activity	2.34E-04
24	GO:0005525: GTP binding	4.52E-04
25	GO:0004672: protein kinase activity	5.01E-04
26	GO:0009883: red or far-red light photoreceptor activity	5.20E-04
27	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.20E-04
28	GO:0000064: L-ornithine transmembrane transporter activity	5.20E-04
29	GO:0004829: threonine-tRNA ligase activity	5.20E-04
30	GO:0019156: isoamylase activity	5.20E-04
31	GO:0004802: transketolase activity	5.20E-04
32	GO:0048531: beta-1,3-galactosyltransferase activity	5.20E-04
33	GO:0008728: GTP diphosphokinase activity	5.20E-04
34	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.20E-04
35	GO:0010291: carotene beta-ring hydroxylase activity	5.20E-04
36	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.36E-04
37	GO:0070402: NADPH binding	8.44E-04
38	GO:0004148: dihydrolipoyl dehydrogenase activity	8.44E-04
39	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.44E-04
40	GO:0008020: G-protein coupled photoreceptor activity	8.44E-04
41	GO:0015189: L-lysine transmembrane transporter activity	1.20E-03
42	GO:0005354: galactose transmembrane transporter activity	1.20E-03
43	GO:0048027: mRNA 5'-UTR binding	1.20E-03
44	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.20E-03
45	GO:0015181: arginine transmembrane transporter activity	1.20E-03
46	GO:0048487: beta-tubulin binding	1.20E-03
47	GO:0016149: translation release factor activity, codon specific	1.20E-03
48	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.20E-03
49	GO:0009882: blue light photoreceptor activity	1.20E-03
50	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.61E-03
51	GO:0070628: proteasome binding	1.61E-03
52	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.61E-03
53	GO:0008374: O-acyltransferase activity	2.05E-03
54	GO:0048038: quinone binding	2.43E-03
55	GO:0031593: polyubiquitin binding	2.52E-03
56	GO:0004556: alpha-amylase activity	2.52E-03
57	GO:0004462: lactoylglutathione lyase activity	2.52E-03
58	GO:0016615: malate dehydrogenase activity	2.52E-03
59	GO:0030060: L-malate dehydrogenase activity	3.03E-03
60	GO:0004427: inorganic diphosphatase activity	3.58E-03
61	GO:0015144: carbohydrate transmembrane transporter activity	3.90E-03
62	GO:0003924: GTPase activity	4.10E-03
63	GO:0008312: 7S RNA binding	4.15E-03
64	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.28E-03
65	GO:0005351: sugar:proton symporter activity	4.54E-03
66	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.74E-03
67	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.74E-03
68	GO:0004222: metalloendopeptidase activity	5.04E-03
69	GO:0003747: translation release factor activity	5.37E-03
70	GO:0071949: FAD binding	5.37E-03
71	GO:0030955: potassium ion binding	6.03E-03
72	GO:0004743: pyruvate kinase activity	6.03E-03
73	GO:0003993: acid phosphatase activity	6.05E-03
74	GO:0042802: identical protein binding	6.34E-03
75	GO:0004673: protein histidine kinase activity	6.71E-03
76	GO:0004805: trehalose-phosphatase activity	6.71E-03
77	GO:0000976: transcription regulatory region sequence-specific DNA binding	8.17E-03
78	GO:0000049: tRNA binding	8.17E-03
79	GO:0000155: phosphorelay sensor kinase activity	8.93E-03
80	GO:0008081: phosphoric diester hydrolase activity	8.93E-03
81	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.01E-02
82	GO:0003690: double-stranded DNA binding	1.04E-02
83	GO:0004407: histone deacetylase activity	1.22E-02
84	GO:0043130: ubiquitin binding	1.22E-02
85	GO:0016491: oxidoreductase activity	1.39E-02
86	GO:0004871: signal transducer activity	1.43E-02
87	GO:0030570: pectate lyase activity	1.59E-02
88	GO:0003727: single-stranded RNA binding	1.69E-02
89	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.85E-02
90	GO:0008536: Ran GTPase binding	1.99E-02
91	GO:0008080: N-acetyltransferase activity	1.99E-02
92	GO:0004527: exonuclease activity	1.99E-02
93	GO:0016853: isomerase activity	2.10E-02
94	GO:0005355: glucose transmembrane transporter activity	2.10E-02
95	GO:0050662: coenzyme binding	2.10E-02
96	GO:0019901: protein kinase binding	2.20E-02
97	GO:0004518: nuclease activity	2.42E-02
98	GO:0008017: microtubule binding	2.61E-02
99	GO:0003684: damaged DNA binding	2.65E-02
100	GO:0016791: phosphatase activity	2.65E-02
101	GO:0005200: structural constituent of cytoskeleton	2.77E-02
102	GO:0016597: amino acid binding	2.89E-02
103	GO:0003743: translation initiation factor activity	2.91E-02
104	GO:0003824: catalytic activity	3.22E-02
105	GO:0004721: phosphoprotein phosphatase activity	3.38E-02
106	GO:0008236: serine-type peptidase activity	3.50E-02
107	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.63E-02
108	GO:0046872: metal ion binding	3.64E-02
109	GO:0005096: GTPase activator activity	3.76E-02
110	GO:0030145: manganese ion binding	4.03E-02
111	GO:0050897: cobalt ion binding	4.03E-02
112	GO:0003697: single-stranded DNA binding	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.14E-22
3	GO:0009570: chloroplast stroma	1.32E-09
4	GO:0080085: signal recognition particle, chloroplast targeting	2.56E-06
5	GO:0009535: chloroplast thylakoid membrane	4.81E-06
6	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.59E-04
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.13E-04
8	GO:0016604: nuclear body	3.73E-04
9	GO:0009574: preprophase band	6.54E-04
10	GO:0016605: PML body	8.44E-04
11	GO:0009941: chloroplast envelope	1.12E-03
12	GO:0015630: microtubule cytoskeleton	1.20E-03
13	GO:0031225: anchored component of membrane	1.51E-03
14	GO:0030663: COPI-coated vesicle membrane	1.61E-03
15	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.61E-03
16	GO:0055035: plastid thylakoid membrane	2.05E-03
17	GO:0031969: chloroplast membrane	2.27E-03
18	GO:0009579: thylakoid	3.45E-03
19	GO:0030529: intracellular ribonucleoprotein complex	3.51E-03
20	GO:0042644: chloroplast nucleoid	5.37E-03
21	GO:0046658: anchored component of plasma membrane	6.68E-03
22	GO:0030125: clathrin vesicle coat	6.71E-03
23	GO:0000311: plastid large ribosomal subunit	8.17E-03
24	GO:0005874: microtubule	1.03E-02
25	GO:0030176: integral component of endoplasmic reticulum membrane	1.05E-02
26	GO:0009536: plastid	1.23E-02
27	GO:0009654: photosystem II oxygen evolving complex	1.31E-02
28	GO:0042651: thylakoid membrane	1.31E-02
29	GO:0009532: plastid stroma	1.40E-02
30	GO:0009706: chloroplast inner membrane	1.44E-02
31	GO:0005886: plasma membrane	1.69E-02
32	GO:0005871: kinesin complex	1.79E-02
33	GO:0009543: chloroplast thylakoid lumen	1.80E-02
34	GO:0005623: cell	1.85E-02
35	GO:0019898: extrinsic component of membrane	2.20E-02
36	GO:0005759: mitochondrial matrix	2.27E-02
37	GO:0005773: vacuole	2.60E-02
38	GO:0009295: nucleoid	2.77E-02
39	GO:0015934: large ribosomal subunit	4.03E-02
40	GO:0031977: thylakoid lumen	4.85E-02