co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G08660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
3	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
4	GO:0007186: G-protein coupled receptor signaling pathway	1.78E-04
5	GO:0010070: zygote asymmetric cell division	1.82E-04
6	GO:0045786: negative regulation of cell cycle	1.82E-04
7	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.82E-04
8	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.82E-04
9	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.52E-04
10	GO:0010069: zygote asymmetric cytokinesis in embryo sac	4.10E-04
11	GO:0009887: animal organ morphogenesis	5.21E-04
12	GO:0006518: peptide metabolic process	6.69E-04
13	GO:0042780: tRNA 3'-end processing	6.69E-04
14	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	6.69E-04
15	GO:0034090: maintenance of meiotic sister chromatid cohesion	6.69E-04
16	GO:0033014: tetrapyrrole biosynthetic process	9.55E-04
17	GO:0007276: gamete generation	9.55E-04
18	GO:0009686: gibberellin biosynthetic process	1.02E-03
19	GO:0006021: inositol biosynthetic process	1.27E-03
20	GO:0009956: radial pattern formation	1.27E-03
21	GO:0000271: polysaccharide biosynthetic process	1.29E-03
22	GO:0045489: pectin biosynthetic process	1.39E-03
23	GO:0002229: defense response to oomycetes	1.71E-03
24	GO:0010942: positive regulation of cell death	1.98E-03
25	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.98E-03
26	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.98E-03
27	GO:0010019: chloroplast-nucleus signaling pathway	2.38E-03
28	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.38E-03
29	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.80E-03
30	GO:0007050: cell cycle arrest	2.80E-03
31	GO:0015995: chlorophyll biosynthetic process	2.89E-03
32	GO:0010492: maintenance of shoot apical meristem identity	3.24E-03
33	GO:0031540: regulation of anthocyanin biosynthetic process	3.24E-03
34	GO:0000105: histidine biosynthetic process	3.24E-03
35	GO:0048564: photosystem I assembly	3.24E-03
36	GO:0045292: mRNA cis splicing, via spliceosome	3.24E-03
37	GO:0006811: ion transport	3.53E-03
38	GO:0016051: carbohydrate biosynthetic process	4.05E-03
39	GO:0006783: heme biosynthetic process	4.20E-03
40	GO:0000373: Group II intron splicing	4.20E-03
41	GO:0048589: developmental growth	4.20E-03
42	GO:0009056: catabolic process	4.20E-03
43	GO:0006468: protein phosphorylation	4.22E-03
44	GO:0071555: cell wall organization	4.59E-03
45	GO:1900865: chloroplast RNA modification	4.71E-03
46	GO:0010192: mucilage biosynthetic process	5.24E-03
47	GO:0006782: protoporphyrinogen IX biosynthetic process	5.24E-03
48	GO:0009416: response to light stimulus	5.66E-03
49	GO:0009089: lysine biosynthetic process via diaminopimelate	5.79E-03
50	GO:0016485: protein processing	5.79E-03
51	GO:0010152: pollen maturation	6.35E-03
52	GO:0006790: sulfur compound metabolic process	6.35E-03
53	GO:0010229: inflorescence development	6.94E-03
54	GO:0009718: anthocyanin-containing compound biosynthetic process	6.94E-03
55	GO:0009767: photosynthetic electron transport chain	6.94E-03
56	GO:0010588: cotyledon vascular tissue pattern formation	6.94E-03
57	GO:0010540: basipetal auxin transport	7.55E-03
58	GO:0006302: double-strand break repair	7.55E-03
59	GO:0048768: root hair cell tip growth	7.55E-03
60	GO:0048467: gynoecium development	7.55E-03
61	GO:0009933: meristem structural organization	7.55E-03
62	GO:0046854: phosphatidylinositol phosphorylation	8.18E-03
63	GO:0009825: multidimensional cell growth	8.18E-03
64	GO:0080188: RNA-directed DNA methylation	8.18E-03
65	GO:0042023: DNA endoreduplication	8.82E-03
66	GO:0006863: purine nucleobase transport	8.82E-03
67	GO:0009833: plant-type primary cell wall biogenesis	8.82E-03
68	GO:0009740: gibberellic acid mediated signaling pathway	9.41E-03
69	GO:0080147: root hair cell development	9.48E-03
70	GO:0006874: cellular calcium ion homeostasis	1.02E-02
71	GO:0051321: meiotic cell cycle	1.09E-02
72	GO:0006306: DNA methylation	1.09E-02
73	GO:0016567: protein ubiquitination	1.10E-02
74	GO:0042127: regulation of cell proliferation	1.31E-02
75	GO:0048443: stamen development	1.31E-02
76	GO:0048653: anther development	1.46E-02
77	GO:0009958: positive gravitropism	1.54E-02
78	GO:0010305: leaf vascular tissue pattern formation	1.54E-02
79	GO:0009791: post-embryonic development	1.70E-02
80	GO:0007623: circadian rhythm	1.74E-02
81	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.79E-02
82	GO:0010583: response to cyclopentenone	1.87E-02
83	GO:0031047: gene silencing by RNA	1.87E-02
84	GO:0009739: response to gibberellin	1.94E-02
85	GO:0009639: response to red or far red light	2.05E-02
86	GO:0009567: double fertilization forming a zygote and endosperm	2.05E-02
87	GO:0019760: glucosinolate metabolic process	2.05E-02
88	GO:0010252: auxin homeostasis	2.05E-02
89	GO:0051301: cell division	2.56E-02
90	GO:0010411: xyloglucan metabolic process	2.61E-02
91	GO:0030244: cellulose biosynthetic process	2.81E-02
92	GO:0009832: plant-type cell wall biogenesis	2.91E-02
93	GO:0008283: cell proliferation	3.98E-02
94	GO:0010114: response to red light	3.98E-02
95	GO:0009926: auxin polar transport	3.98E-02
96	GO:0051707: response to other organism	3.98E-02
97	GO:0045892: negative regulation of transcription, DNA-templated	4.04E-02
98	GO:0042546: cell wall biogenesis	4.09E-02
99	GO:0006351: transcription, DNA-templated	4.25E-02
100	GO:0009965: leaf morphogenesis	4.32E-02
101	GO:0009664: plant-type cell wall organization	4.68E-02
102	GO:0006364: rRNA processing	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
3	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
4	GO:0004401: histidinol-phosphatase activity	0.00E+00
5	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.82E-04
6	GO:0008836: diaminopimelate decarboxylase activity	1.82E-04
7	GO:0017022: myosin binding	4.10E-04
8	GO:0010296: prenylcysteine methylesterase activity	4.10E-04
9	GO:0052832: inositol monophosphate 3-phosphatase activity	4.10E-04
10	GO:0004109: coproporphyrinogen oxidase activity	4.10E-04
11	GO:0008805: carbon-monoxide oxygenase activity	4.10E-04
12	GO:0008934: inositol monophosphate 1-phosphatase activity	4.10E-04
13	GO:0052833: inositol monophosphate 4-phosphatase activity	4.10E-04
14	GO:0016707: gibberellin 3-beta-dioxygenase activity	6.69E-04
15	GO:0042781: 3'-tRNA processing endoribonuclease activity	6.69E-04
16	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	9.43E-04
17	GO:0010011: auxin binding	1.27E-03
18	GO:0043495: protein anchor	1.27E-03
19	GO:0004930: G-protein coupled receptor activity	1.27E-03
20	GO:0030332: cyclin binding	1.98E-03
21	GO:0004462: lactoylglutathione lyase activity	1.98E-03
22	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.98E-03
23	GO:0016759: cellulose synthase activity	2.07E-03
24	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.38E-03
25	GO:0004222: metalloendopeptidase activity	3.53E-03
26	GO:0004674: protein serine/threonine kinase activity	3.77E-03
27	GO:0004970: ionotropic glutamate receptor activity	8.18E-03
28	GO:0005217: intracellular ligand-gated ion channel activity	8.18E-03
29	GO:0004871: signal transducer activity	9.04E-03
30	GO:0008134: transcription factor binding	9.48E-03
31	GO:0005345: purine nucleobase transmembrane transporter activity	1.02E-02
32	GO:0008408: 3'-5' exonuclease activity	1.09E-02
33	GO:0016758: transferase activity, transferring hexosyl groups	1.22E-02
34	GO:0016760: cellulose synthase (UDP-forming) activity	1.23E-02
35	GO:0016301: kinase activity	1.29E-02
36	GO:0001085: RNA polymerase II transcription factor binding	1.54E-02
37	GO:0010181: FMN binding	1.62E-02
38	GO:0019901: protein kinase binding	1.70E-02
39	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.79E-02
40	GO:0008237: metallopeptidase activity	2.14E-02
41	GO:0046983: protein dimerization activity	2.53E-02
42	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.61E-02
43	GO:0008236: serine-type peptidase activity	2.71E-02
44	GO:0005096: GTPase activator activity	2.91E-02
45	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.01E-02
46	GO:0030145: manganese ion binding	3.11E-02
47	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.11E-02
48	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.54E-02
49	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.95E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000791: euchromatin	1.82E-04
3	GO:0030870: Mre11 complex	4.10E-04
4	GO:0009531: secondary cell wall	9.55E-04
5	GO:0000795: synaptonemal complex	1.61E-03
6	GO:0009707: chloroplast outer membrane	3.20E-03
7	GO:0042644: chloroplast nucleoid	4.20E-03
8	GO:0005875: microtubule associated complex	8.82E-03
9	GO:0000419: DNA-directed RNA polymerase V complex	8.82E-03
10	GO:0043234: protein complex	8.82E-03
11	GO:0016592: mediator complex	1.87E-02
12	GO:0000785: chromatin	1.87E-02
13	GO:0009570: chloroplast stroma	1.90E-02
14	GO:0071944: cell periphery	1.96E-02
15	GO:0010319: stromule	2.14E-02
16	GO:0009536: plastid	2.23E-02
17	GO:0016021: integral component of membrane	2.34E-02
18	GO:0005667: transcription factor complex	2.51E-02
19	GO:0000139: Golgi membrane	2.58E-02
20	GO:0031977: thylakoid lumen	3.76E-02
21	GO:0090406: pollen tube	3.98E-02