co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G08600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0071000: response to magnetism	0.00E+00
5	GO:0000372: Group I intron splicing	0.00E+00
6	GO:0080127: fruit septum development	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:0019685: photosynthesis, dark reaction	0.00E+00
9	GO:0009734: auxin-activated signaling pathway	6.74E-05
10	GO:0009926: auxin polar transport	3.27E-04
11	GO:0009733: response to auxin	3.42E-04
12	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.50E-04
13	GO:0072387: flavin adenine dinucleotide metabolic process	3.50E-04
14	GO:0043087: regulation of GTPase activity	3.50E-04
15	GO:0043609: regulation of carbon utilization	3.50E-04
16	GO:0034757: negative regulation of iron ion transport	3.50E-04
17	GO:0000373: Group II intron splicing	5.58E-04
18	GO:1901529: positive regulation of anion channel activity	7.62E-04
19	GO:0080005: photosystem stoichiometry adjustment	7.62E-04
20	GO:0010617: circadian regulation of calcium ion oscillation	7.62E-04
21	GO:0010271: regulation of chlorophyll catabolic process	7.62E-04
22	GO:0099402: plant organ development	7.62E-04
23	GO:0001736: establishment of planar polarity	7.62E-04
24	GO:0010343: singlet oxygen-mediated programmed cell death	7.62E-04
25	GO:0010582: floral meristem determinacy	1.01E-03
26	GO:1902448: positive regulation of shade avoidance	1.23E-03
27	GO:0006000: fructose metabolic process	1.23E-03
28	GO:1901672: positive regulation of systemic acquired resistance	1.23E-03
29	GO:0080117: secondary growth	1.23E-03
30	GO:0042780: tRNA 3'-end processing	1.23E-03
31	GO:0045493: xylan catabolic process	1.23E-03
32	GO:0030029: actin filament-based process	1.23E-03
33	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.23E-03
34	GO:0010540: basipetal auxin transport	1.29E-03
35	GO:0034059: response to anoxia	1.78E-03
36	GO:0044211: CTP salvage	1.78E-03
37	GO:0009800: cinnamic acid biosynthetic process	1.78E-03
38	GO:1901332: negative regulation of lateral root development	1.78E-03
39	GO:2000904: regulation of starch metabolic process	1.78E-03
40	GO:2001141: regulation of RNA biosynthetic process	1.78E-03
41	GO:0051513: regulation of monopolar cell growth	1.78E-03
42	GO:0051639: actin filament network formation	1.78E-03
43	GO:0044206: UMP salvage	2.38E-03
44	GO:0006021: inositol biosynthetic process	2.38E-03
45	GO:1902347: response to strigolactone	2.38E-03
46	GO:0009956: radial pattern formation	2.38E-03
47	GO:0051764: actin crosslink formation	2.38E-03
48	GO:0010158: abaxial cell fate specification	3.05E-03
49	GO:0010117: photoprotection	3.05E-03
50	GO:0046283: anthocyanin-containing compound metabolic process	3.05E-03
51	GO:0016554: cytidine to uridine editing	3.76E-03
52	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.76E-03
53	GO:1901371: regulation of leaf morphogenesis	3.76E-03
54	GO:0006559: L-phenylalanine catabolic process	3.76E-03
55	GO:0006206: pyrimidine nucleobase metabolic process	3.76E-03
56	GO:0060918: auxin transport	3.76E-03
57	GO:0048831: regulation of shoot system development	3.76E-03
58	GO:0003006: developmental process involved in reproduction	3.76E-03
59	GO:0048827: phyllome development	3.76E-03
60	GO:0009658: chloroplast organization	4.01E-03
61	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.54E-03
62	GO:0009942: longitudinal axis specification	4.54E-03
63	GO:0048509: regulation of meristem development	4.54E-03
64	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.54E-03
65	GO:0010310: regulation of hydrogen peroxide metabolic process	4.54E-03
66	GO:0010583: response to cyclopentenone	4.65E-03
67	GO:0010050: vegetative phase change	5.36E-03
68	GO:0051510: regulation of unidimensional cell growth	5.36E-03
69	GO:0006401: RNA catabolic process	5.36E-03
70	GO:0009610: response to symbiotic fungus	5.36E-03
71	GO:0046620: regulation of organ growth	6.22E-03
72	GO:0006353: DNA-templated transcription, termination	6.22E-03
73	GO:0009850: auxin metabolic process	6.22E-03
74	GO:0000105: histidine biosynthetic process	6.22E-03
75	GO:0009416: response to light stimulus	7.10E-03
76	GO:0071482: cellular response to light stimulus	7.14E-03
77	GO:0009827: plant-type cell wall modification	7.14E-03
78	GO:0007186: G-protein coupled receptor signaling pathway	7.14E-03
79	GO:0009657: plastid organization	7.14E-03
80	GO:0010052: guard cell differentiation	7.14E-03
81	GO:0032544: plastid translation	7.14E-03
82	GO:0007389: pattern specification process	7.14E-03
83	GO:0009932: cell tip growth	7.14E-03
84	GO:0006002: fructose 6-phosphate metabolic process	7.14E-03
85	GO:0010411: xyloglucan metabolic process	7.43E-03
86	GO:0048507: meristem development	8.10E-03
87	GO:0046916: cellular transition metal ion homeostasis	8.10E-03
88	GO:0048589: developmental growth	8.10E-03
89	GO:0030244: cellulose biosynthetic process	8.23E-03
90	GO:0018298: protein-chromophore linkage	8.23E-03
91	GO:0010311: lateral root formation	8.66E-03
92	GO:0000160: phosphorelay signal transduction system	8.66E-03
93	GO:0009638: phototropism	9.10E-03
94	GO:0010018: far-red light signaling pathway	9.10E-03
95	GO:1900865: chloroplast RNA modification	9.10E-03
96	GO:0016571: histone methylation	9.10E-03
97	GO:0008202: steroid metabolic process	9.10E-03
98	GO:0016573: histone acetylation	9.10E-03
99	GO:1900426: positive regulation of defense response to bacterium	9.10E-03
100	GO:0006535: cysteine biosynthetic process from serine	1.01E-02
101	GO:0048829: root cap development	1.01E-02
102	GO:0010192: mucilage biosynthetic process	1.01E-02
103	GO:0009451: RNA modification	1.02E-02
104	GO:0006352: DNA-templated transcription, initiation	1.12E-02
105	GO:0009750: response to fructose	1.12E-02
106	GO:0048765: root hair cell differentiation	1.12E-02
107	GO:0006790: sulfur compound metabolic process	1.24E-02
108	GO:0045037: protein import into chloroplast stroma	1.24E-02
109	GO:0010152: pollen maturation	1.24E-02
110	GO:0009785: blue light signaling pathway	1.35E-02
111	GO:0010229: inflorescence development	1.35E-02
112	GO:0009718: anthocyanin-containing compound biosynthetic process	1.35E-02
113	GO:0010075: regulation of meristem growth	1.35E-02
114	GO:0048467: gynoecium development	1.48E-02
115	GO:0010020: chloroplast fission	1.48E-02
116	GO:0009933: meristem structural organization	1.48E-02
117	GO:0009266: response to temperature stimulus	1.48E-02
118	GO:0009636: response to toxic substance	1.52E-02
119	GO:0009825: multidimensional cell growth	1.60E-02
120	GO:0046854: phosphatidylinositol phosphorylation	1.60E-02
121	GO:0010053: root epidermal cell differentiation	1.60E-02
122	GO:0042753: positive regulation of circadian rhythm	1.73E-02
123	GO:0006863: purine nucleobase transport	1.73E-02
124	GO:0009833: plant-type primary cell wall biogenesis	1.73E-02
125	GO:0006364: rRNA processing	1.83E-02
126	GO:0009736: cytokinin-activated signaling pathway	1.83E-02
127	GO:0006338: chromatin remodeling	1.86E-02
128	GO:0080147: root hair cell development	1.86E-02
129	GO:0051017: actin filament bundle assembly	1.86E-02
130	GO:0006289: nucleotide-excision repair	1.86E-02
131	GO:2000377: regulation of reactive oxygen species metabolic process	1.86E-02
132	GO:0005992: trehalose biosynthetic process	1.86E-02
133	GO:0019344: cysteine biosynthetic process	1.86E-02
134	GO:0010073: meristem maintenance	2.00E-02
135	GO:0003333: amino acid transmembrane transport	2.13E-02
136	GO:0080167: response to karrikin	2.27E-02
137	GO:0016226: iron-sulfur cluster assembly	2.28E-02
138	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.37E-02
139	GO:0071215: cellular response to abscisic acid stimulus	2.42E-02
140	GO:0046777: protein autophosphorylation	2.47E-02
141	GO:0048443: stamen development	2.57E-02
142	GO:0006284: base-excision repair	2.57E-02
143	GO:0009624: response to nematode	2.60E-02
144	GO:0070417: cellular response to cold	2.72E-02
145	GO:0010087: phloem or xylem histogenesis	2.88E-02
146	GO:0010118: stomatal movement	2.88E-02
147	GO:0048653: anther development	2.88E-02
148	GO:0045489: pectin biosynthetic process	3.04E-02
149	GO:0009958: positive gravitropism	3.04E-02
150	GO:0010305: leaf vascular tissue pattern formation	3.04E-02
151	GO:0048868: pollen tube development	3.04E-02
152	GO:0042752: regulation of circadian rhythm	3.20E-02
153	GO:0009646: response to absence of light	3.20E-02
154	GO:0048825: cotyledon development	3.36E-02
155	GO:0009749: response to glucose	3.36E-02
156	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.53E-02
157	GO:0010252: auxin homeostasis	4.04E-02
158	GO:0009639: response to red or far red light	4.04E-02
159	GO:0040008: regulation of growth	4.28E-02
160	GO:0045490: pectin catabolic process	4.48E-02
161	GO:0009911: positive regulation of flower development	4.58E-02
162	GO:0010029: regulation of seed germination	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0008859: exoribonuclease II activity	0.00E+00
2	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
3	GO:0004401: histidinol-phosphatase activity	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
6	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
7	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
8	GO:0010011: auxin binding	7.62E-05
9	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	3.50E-04
10	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	3.50E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.50E-04
12	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.50E-04
13	GO:0005227: calcium activated cation channel activity	3.50E-04
14	GO:0008805: carbon-monoxide oxygenase activity	7.62E-04
15	GO:0008934: inositol monophosphate 1-phosphatase activity	7.62E-04
16	GO:0052833: inositol monophosphate 4-phosphatase activity	7.62E-04
17	GO:0050736: O-malonyltransferase activity	7.62E-04
18	GO:0009884: cytokinin receptor activity	7.62E-04
19	GO:0050017: L-3-cyanoalanine synthase activity	7.62E-04
20	GO:0005094: Rho GDP-dissociation inhibitor activity	7.62E-04
21	GO:0004047: aminomethyltransferase activity	7.62E-04
22	GO:0052832: inositol monophosphate 3-phosphatase activity	7.62E-04
23	GO:0045548: phenylalanine ammonia-lyase activity	1.23E-03
24	GO:0003913: DNA photolyase activity	1.23E-03
25	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.23E-03
26	GO:0016805: dipeptidase activity	1.23E-03
27	GO:0005096: GTPase activator activity	1.23E-03
28	GO:0005034: osmosensor activity	1.23E-03
29	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.78E-03
30	GO:0009882: blue light photoreceptor activity	1.78E-03
31	GO:0016987: sigma factor activity	2.38E-03
32	GO:0010328: auxin influx transmembrane transporter activity	2.38E-03
33	GO:0070628: proteasome binding	2.38E-03
34	GO:0009044: xylan 1,4-beta-xylosidase activity	2.38E-03
35	GO:0046556: alpha-L-arabinofuranosidase activity	2.38E-03
36	GO:0001053: plastid sigma factor activity	2.38E-03
37	GO:0004845: uracil phosphoribosyltransferase activity	2.38E-03
38	GO:0030570: pectate lyase activity	2.57E-03
39	GO:0005471: ATP:ADP antiporter activity	3.05E-03
40	GO:0008725: DNA-3-methyladenine glycosylase activity	3.05E-03
41	GO:0000293: ferric-chelate reductase activity	3.76E-03
42	GO:0031593: polyubiquitin binding	3.76E-03
43	GO:2001070: starch binding	3.76E-03
44	GO:0019901: protein kinase binding	4.07E-03
45	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.54E-03
46	GO:0004849: uridine kinase activity	4.54E-03
47	GO:0019900: kinase binding	4.54E-03
48	GO:0004124: cysteine synthase activity	4.54E-03
49	GO:0009881: photoreceptor activity	5.36E-03
50	GO:0046914: transition metal ion binding	7.14E-03
51	GO:0008142: oxysterol binding	7.14E-03
52	GO:0004871: signal transducer activity	7.86E-03
53	GO:0071949: FAD binding	8.10E-03
54	GO:0009672: auxin:proton symporter activity	9.10E-03
55	GO:0015020: glucuronosyltransferase activity	1.01E-02
56	GO:0004673: protein histidine kinase activity	1.01E-02
57	GO:0004805: trehalose-phosphatase activity	1.01E-02
58	GO:0004519: endonuclease activity	1.14E-02
59	GO:0042802: identical protein binding	1.35E-02
60	GO:0000175: 3'-5'-exoribonuclease activity	1.35E-02
61	GO:0010329: auxin efflux transmembrane transporter activity	1.35E-02
62	GO:0000155: phosphorelay sensor kinase activity	1.35E-02
63	GO:0043621: protein self-association	1.46E-02
64	GO:0035091: phosphatidylinositol binding	1.46E-02
65	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.73E-02
66	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.73E-02
67	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.73E-02
68	GO:0043130: ubiquitin binding	1.86E-02
69	GO:0043424: protein histidine kinase binding	2.00E-02
70	GO:0005345: purine nucleobase transmembrane transporter activity	2.00E-02
71	GO:0004540: ribonuclease activity	2.13E-02
72	GO:0003723: RNA binding	2.19E-02
73	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.38E-02
74	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.38E-02
75	GO:0016760: cellulose synthase (UDP-forming) activity	2.42E-02
76	GO:0008536: Ran GTPase binding	3.04E-02
77	GO:0010181: FMN binding	3.20E-02
78	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.22E-02
79	GO:0019843: rRNA binding	3.26E-02
80	GO:0016829: lyase activity	3.52E-02
81	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.53E-02
82	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.58E-02
83	GO:0000156: phosphorelay response regulator activity	3.87E-02
84	GO:0046983: protein dimerization activity	3.87E-02
85	GO:0051015: actin filament binding	3.87E-02
86	GO:0003684: damaged DNA binding	4.04E-02
87	GO:0016759: cellulose synthase activity	4.04E-02
88	GO:0008237: metallopeptidase activity	4.22E-02
89	GO:0005200: structural constituent of cytoskeleton	4.22E-02
90	GO:0016413: O-acetyltransferase activity	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0045254: pyruvate dehydrogenase complex	7.62E-04
4	GO:0016605: PML body	1.23E-03
5	GO:0032432: actin filament bundle	1.78E-03
6	GO:0000178: exosome (RNase complex)	3.05E-03
7	GO:0009986: cell surface	5.36E-03
8	GO:0009507: chloroplast	7.88E-03
9	GO:0009707: chloroplast outer membrane	8.23E-03
10	GO:0016604: nuclear body	9.10E-03
11	GO:0005884: actin filament	1.12E-02
12	GO:0016602: CCAAT-binding factor complex	1.35E-02
13	GO:0009574: preprophase band	1.35E-02
14	GO:0005578: proteinaceous extracellular matrix	1.35E-02
15	GO:0009532: plastid stroma	2.13E-02
16	GO:0005770: late endosome	3.04E-02
17	GO:0009505: plant-type cell wall	3.49E-02
18	GO:0005886: plasma membrane	4.40E-02
19	GO:0030529: intracellular ribonucleoprotein complex	4.58E-02
20	GO:0000932: P-body	4.58E-02