co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G08510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905157: positive regulation of photosynthesis	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:0006849: plasma membrane pyruvate transport	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
8	GO:0016118: carotenoid catabolic process	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:0015717: triose phosphate transport	0.00E+00
11	GO:1904277: negative regulation of wax biosynthetic process	0.00E+00
12	GO:1901259: chloroplast rRNA processing	2.76E-08
13	GO:0006418: tRNA aminoacylation for protein translation	1.40E-04
14	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.45E-04
15	GO:0009643: photosynthetic acclimation	1.45E-04
16	GO:0009955: adaxial/abaxial pattern specification	1.97E-04
17	GO:0043007: maintenance of rDNA	3.14E-04
18	GO:0010028: xanthophyll cycle	3.14E-04
19	GO:0034337: RNA folding	3.14E-04
20	GO:0005991: trehalose metabolic process	3.14E-04
21	GO:0000023: maltose metabolic process	3.14E-04
22	GO:0080112: seed growth	3.14E-04
23	GO:0000476: maturation of 4.5S rRNA	3.14E-04
24	GO:0005980: glycogen catabolic process	3.14E-04
25	GO:0030198: extracellular matrix organization	3.14E-04
26	GO:0000967: rRNA 5'-end processing	3.14E-04
27	GO:1905039: carboxylic acid transmembrane transport	3.14E-04
28	GO:1905200: gibberellic acid transmembrane transport	3.14E-04
29	GO:0007093: mitotic cell cycle checkpoint	3.14E-04
30	GO:0042371: vitamin K biosynthetic process	3.14E-04
31	GO:0043686: co-translational protein modification	3.14E-04
32	GO:0032544: plastid translation	3.98E-04
33	GO:0010206: photosystem II repair	4.78E-04
34	GO:0009658: chloroplast organization	6.78E-04
35	GO:0010027: thylakoid membrane organization	6.81E-04
36	GO:0016122: xanthophyll metabolic process	6.87E-04
37	GO:0016121: carotene catabolic process	6.87E-04
38	GO:0034470: ncRNA processing	6.87E-04
39	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.87E-04
40	GO:0009629: response to gravity	6.87E-04
41	GO:0016124: xanthophyll catabolic process	6.87E-04
42	GO:0007154: cell communication	6.87E-04
43	GO:0018026: peptidyl-lysine monomethylation	6.87E-04
44	GO:0071497: cellular response to freezing	6.87E-04
45	GO:0090342: regulation of cell aging	6.87E-04
46	GO:0042325: regulation of phosphorylation	6.87E-04
47	GO:0051304: chromosome separation	6.87E-04
48	GO:1904143: positive regulation of carotenoid biosynthetic process	6.87E-04
49	GO:0009773: photosynthetic electron transport in photosystem I	7.62E-04
50	GO:0015995: chlorophyll biosynthetic process	8.37E-04
51	GO:0005983: starch catabolic process	8.70E-04
52	GO:0016050: vesicle organization	1.11E-03
53	GO:0009405: pathogenesis	1.11E-03
54	GO:0035436: triose phosphate transmembrane transport	1.11E-03
55	GO:0006696: ergosterol biosynthetic process	1.11E-03
56	GO:0045338: farnesyl diphosphate metabolic process	1.60E-03
57	GO:0006020: inositol metabolic process	1.60E-03
58	GO:0009152: purine ribonucleotide biosynthetic process	1.60E-03
59	GO:0046653: tetrahydrofolate metabolic process	1.60E-03
60	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.60E-03
61	GO:0010731: protein glutathionylation	1.60E-03
62	GO:0046739: transport of virus in multicellular host	1.60E-03
63	GO:0043572: plastid fission	1.60E-03
64	GO:1901141: regulation of lignin biosynthetic process	2.14E-03
65	GO:0015994: chlorophyll metabolic process	2.14E-03
66	GO:0022622: root system development	2.14E-03
67	GO:0015713: phosphoglycerate transport	2.14E-03
68	GO:0006021: inositol biosynthetic process	2.14E-03
69	GO:0031365: N-terminal protein amino acid modification	2.74E-03
70	GO:0032543: mitochondrial translation	2.74E-03
71	GO:0006564: L-serine biosynthetic process	2.74E-03
72	GO:0010236: plastoquinone biosynthetic process	2.74E-03
73	GO:0009958: positive gravitropism	3.01E-03
74	GO:0000470: maturation of LSU-rRNA	3.38E-03
75	GO:1902456: regulation of stomatal opening	3.38E-03
76	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.38E-03
77	GO:0000741: karyogamy	3.38E-03
78	GO:0046855: inositol phosphate dephosphorylation	3.38E-03
79	GO:0019252: starch biosynthetic process	3.47E-03
80	GO:0055114: oxidation-reduction process	3.52E-03
81	GO:0032502: developmental process	3.97E-03
82	GO:0010310: regulation of hydrogen peroxide metabolic process	4.06E-03
83	GO:0042372: phylloquinone biosynthetic process	4.06E-03
84	GO:2000033: regulation of seed dormancy process	4.06E-03
85	GO:0048280: vesicle fusion with Golgi apparatus	4.06E-03
86	GO:1901657: glycosyl compound metabolic process	4.23E-03
87	GO:0032880: regulation of protein localization	4.80E-03
88	GO:0009772: photosynthetic electron transport in photosystem II	4.80E-03
89	GO:0015979: photosynthesis	5.34E-03
90	GO:0052543: callose deposition in cell wall	5.57E-03
91	GO:0048564: photosystem I assembly	5.57E-03
92	GO:0005978: glycogen biosynthetic process	5.57E-03
93	GO:0006353: DNA-templated transcription, termination	5.57E-03
94	GO:0070413: trehalose metabolism in response to stress	5.57E-03
95	GO:0010078: maintenance of root meristem identity	5.57E-03
96	GO:0009607: response to biotic stimulus	5.68E-03
97	GO:0043562: cellular response to nitrogen levels	6.39E-03
98	GO:0015996: chlorophyll catabolic process	6.39E-03
99	GO:0010497: plasmodesmata-mediated intercellular transport	6.39E-03
100	GO:0009657: plastid organization	6.39E-03
101	GO:0046685: response to arsenic-containing substance	7.24E-03
102	GO:0009821: alkaloid biosynthetic process	7.24E-03
103	GO:0046916: cellular transition metal ion homeostasis	7.24E-03
104	GO:0006783: heme biosynthetic process	7.24E-03
105	GO:0016042: lipid catabolic process	7.56E-03
106	GO:0048527: lateral root development	8.12E-03
107	GO:0071577: zinc II ion transmembrane transport	8.14E-03
108	GO:0010205: photoinhibition	8.14E-03
109	GO:0009638: phototropism	8.14E-03
110	GO:0031425: chloroplast RNA processing	8.14E-03
111	GO:0045036: protein targeting to chloroplast	9.07E-03
112	GO:0009641: shade avoidance	9.07E-03
113	GO:0010629: negative regulation of gene expression	9.07E-03
114	GO:0006896: Golgi to vacuole transport	9.07E-03
115	GO:0006782: protoporphyrinogen IX biosynthetic process	9.07E-03
116	GO:0034599: cellular response to oxidative stress	9.31E-03
117	GO:0009684: indoleacetic acid biosynthetic process	1.00E-02
118	GO:0072593: reactive oxygen species metabolic process	1.00E-02
119	GO:0015770: sucrose transport	1.00E-02
120	GO:0006415: translational termination	1.00E-02
121	GO:0006790: sulfur compound metabolic process	1.11E-02
122	GO:0006820: anion transport	1.11E-02
123	GO:0016024: CDP-diacylglycerol biosynthetic process	1.11E-02
124	GO:0010588: cotyledon vascular tissue pattern formation	1.21E-02
125	GO:2000012: regulation of auxin polar transport	1.21E-02
126	GO:0010102: lateral root morphogenesis	1.21E-02
127	GO:0010628: positive regulation of gene expression	1.21E-02
128	GO:0009266: response to temperature stimulus	1.32E-02
129	GO:0048467: gynoecium development	1.32E-02
130	GO:0010143: cutin biosynthetic process	1.32E-02
131	GO:0010020: chloroplast fission	1.32E-02
132	GO:0010223: secondary shoot formation	1.32E-02
133	GO:0005975: carbohydrate metabolic process	1.34E-02
134	GO:0006855: drug transmembrane transport	1.34E-02
135	GO:0046854: phosphatidylinositol phosphorylation	1.43E-02
136	GO:0009901: anther dehiscence	1.43E-02
137	GO:0019853: L-ascorbic acid biosynthetic process	1.43E-02
138	GO:0005992: trehalose biosynthetic process	1.66E-02
139	GO:0006857: oligopeptide transport	1.67E-02
140	GO:0009768: photosynthesis, light harvesting in photosystem I	1.78E-02
141	GO:0009416: response to light stimulus	1.88E-02
142	GO:0048367: shoot system development	1.90E-02
143	GO:0061077: chaperone-mediated protein folding	1.91E-02
144	GO:0016226: iron-sulfur cluster assembly	2.03E-02
145	GO:0006730: one-carbon metabolic process	2.03E-02
146	GO:0006508: proteolysis	2.07E-02
147	GO:0006012: galactose metabolic process	2.16E-02
148	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.16E-02
149	GO:0009686: gibberellin biosynthetic process	2.16E-02
150	GO:0009742: brassinosteroid mediated signaling pathway	2.35E-02
151	GO:0016117: carotenoid biosynthetic process	2.43E-02
152	GO:0042147: retrograde transport, endosome to Golgi	2.43E-02
153	GO:0008284: positive regulation of cell proliferation	2.43E-02
154	GO:0010087: phloem or xylem histogenesis	2.57E-02
155	GO:0080022: primary root development	2.57E-02
156	GO:0010182: sugar mediated signaling pathway	2.71E-02
157	GO:0009741: response to brassinosteroid	2.71E-02
158	GO:0010268: brassinosteroid homeostasis	2.71E-02
159	GO:0006662: glycerol ether metabolic process	2.71E-02
160	GO:0010197: polar nucleus fusion	2.71E-02
161	GO:0015031: protein transport	2.73E-02
162	GO:0006814: sodium ion transport	2.85E-02
163	GO:0009646: response to absence of light	2.85E-02
164	GO:0009058: biosynthetic process	2.93E-02
165	GO:0009793: embryo development ending in seed dormancy	2.96E-02
166	GO:0009851: auxin biosynthetic process	3.00E-02
167	GO:0006623: protein targeting to vacuole	3.00E-02
168	GO:0048825: cotyledon development	3.00E-02
169	GO:0016132: brassinosteroid biosynthetic process	3.15E-02
170	GO:0006891: intra-Golgi vesicle-mediated transport	3.15E-02
171	GO:0009790: embryo development	3.24E-02
172	GO:0030163: protein catabolic process	3.45E-02
173	GO:0016125: sterol metabolic process	3.61E-02
174	GO:0019760: glucosinolate metabolic process	3.61E-02
175	GO:0009828: plant-type cell wall loosening	3.61E-02
176	GO:0016126: sterol biosynthetic process	4.09E-02
177	GO:0006906: vesicle fusion	4.42E-02
178	GO:0006888: ER to Golgi vesicle-mediated transport	4.59E-02
179	GO:0048481: plant ovule development	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0097100: supercoiled DNA binding	0.00E+00
2	GO:0005201: extracellular matrix structural constituent	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0005363: maltose transmembrane transporter activity	0.00E+00
5	GO:0010303: limit dextrinase activity	0.00E+00
6	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0051060: pullulanase activity	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0004823: leucine-tRNA ligase activity	0.00E+00
11	GO:0002161: aminoacyl-tRNA editing activity	1.59E-05
12	GO:0004812: aminoacyl-tRNA ligase activity	2.61E-04
13	GO:1905201: gibberellin transmembrane transporter activity	3.14E-04
14	GO:0008184: glycogen phosphorylase activity	3.14E-04
15	GO:0051777: ent-kaurenoate oxidase activity	3.14E-04
16	GO:0004856: xylulokinase activity	3.14E-04
17	GO:0004645: phosphorylase activity	3.14E-04
18	GO:0004853: uroporphyrinogen decarboxylase activity	3.14E-04
19	GO:0042586: peptide deformylase activity	3.14E-04
20	GO:0034256: chlorophyll(ide) b reductase activity	3.14E-04
21	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.14E-04
22	GO:0071949: FAD binding	4.78E-04
23	GO:0008237: metallopeptidase activity	5.88E-04
24	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	6.87E-04
25	GO:0004617: phosphoglycerate dehydrogenase activity	6.87E-04
26	GO:0052832: inositol monophosphate 3-phosphatase activity	6.87E-04
27	GO:0008934: inositol monophosphate 1-phosphatase activity	6.87E-04
28	GO:0052833: inositol monophosphate 4-phosphatase activity	6.87E-04
29	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	6.87E-04
30	GO:0016630: protochlorophyllide reductase activity	6.87E-04
31	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.87E-04
32	GO:0019843: rRNA binding	9.93E-04
33	GO:0004222: metalloendopeptidase activity	1.07E-03
34	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.11E-03
35	GO:0071917: triose-phosphate transmembrane transporter activity	1.11E-03
36	GO:0008864: formyltetrahydrofolate deformylase activity	1.11E-03
37	GO:0003913: DNA photolyase activity	1.11E-03
38	GO:0004148: dihydrolipoyl dehydrogenase activity	1.11E-03
39	GO:0090729: toxin activity	1.11E-03
40	GO:0050833: pyruvate transmembrane transporter activity	1.11E-03
41	GO:0004751: ribose-5-phosphate isomerase activity	1.11E-03
42	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.11E-03
43	GO:0008508: bile acid:sodium symporter activity	1.60E-03
44	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.60E-03
45	GO:0016149: translation release factor activity, codon specific	1.60E-03
46	GO:0016851: magnesium chelatase activity	1.60E-03
47	GO:0022890: inorganic cation transmembrane transporter activity	1.60E-03
48	GO:0004176: ATP-dependent peptidase activity	1.84E-03
49	GO:0004659: prenyltransferase activity	2.14E-03
50	GO:0016279: protein-lysine N-methyltransferase activity	2.14E-03
51	GO:0045430: chalcone isomerase activity	2.14E-03
52	GO:0008878: glucose-1-phosphate adenylyltransferase activity	2.14E-03
53	GO:0015120: phosphoglycerate transmembrane transporter activity	2.14E-03
54	GO:0016846: carbon-sulfur lyase activity	2.74E-03
55	GO:0003959: NADPH dehydrogenase activity	2.74E-03
56	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.74E-03
57	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	2.74E-03
58	GO:0016788: hydrolase activity, acting on ester bonds	3.24E-03
59	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.38E-03
60	GO:0035673: oligopeptide transmembrane transporter activity	3.38E-03
61	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.38E-03
62	GO:0004556: alpha-amylase activity	3.38E-03
63	GO:0005525: GTP binding	3.95E-03
64	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.06E-03
65	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.06E-03
66	GO:0016791: phosphatase activity	4.50E-03
67	GO:0004033: aldo-keto reductase (NADP) activity	5.57E-03
68	GO:0004252: serine-type endopeptidase activity	6.13E-03
69	GO:0102483: scopolin beta-glucosidase activity	6.33E-03
70	GO:0046914: transition metal ion binding	6.39E-03
71	GO:0003747: translation release factor activity	7.24E-03
72	GO:0015238: drug transmembrane transporter activity	7.37E-03
73	GO:0015297: antiporter activity	7.62E-03
74	GO:0016844: strictosidine synthase activity	8.14E-03
75	GO:0008422: beta-glucosidase activity	9.73E-03
76	GO:0000149: SNARE binding	9.73E-03
77	GO:0008559: xenobiotic-transporting ATPase activity	1.00E-02
78	GO:0015386: potassium:proton antiporter activity	1.00E-02
79	GO:0008515: sucrose transmembrane transporter activity	1.00E-02
80	GO:0008327: methyl-CpG binding	1.00E-02
81	GO:0016491: oxidoreductase activity	1.02E-02
82	GO:0015198: oligopeptide transporter activity	1.11E-02
83	GO:0000049: tRNA binding	1.11E-02
84	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.11E-02
85	GO:0005484: SNAP receptor activity	1.15E-02
86	GO:0004089: carbonate dehydratase activity	1.21E-02
87	GO:0031072: heat shock protein binding	1.21E-02
88	GO:0019888: protein phosphatase regulator activity	1.21E-02
89	GO:0003725: double-stranded RNA binding	1.21E-02
90	GO:0004022: alcohol dehydrogenase (NAD) activity	1.21E-02
91	GO:0008083: growth factor activity	1.32E-02
92	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.34E-02
93	GO:0051119: sugar transmembrane transporter activity	1.43E-02
94	GO:0031409: pigment binding	1.54E-02
95	GO:0051536: iron-sulfur cluster binding	1.66E-02
96	GO:0005385: zinc ion transmembrane transporter activity	1.66E-02
97	GO:0005528: FK506 binding	1.66E-02
98	GO:0015079: potassium ion transmembrane transporter activity	1.78E-02
99	GO:0008324: cation transmembrane transporter activity	1.78E-02
100	GO:0004497: monooxygenase activity	1.85E-02
101	GO:0052689: carboxylic ester hydrolase activity	2.10E-02
102	GO:0047134: protein-disulfide reductase activity	2.43E-02
103	GO:0003713: transcription coactivator activity	2.71E-02
104	GO:0004791: thioredoxin-disulfide reductase activity	2.85E-02
105	GO:0015299: solute:proton antiporter activity	2.85E-02
106	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.45E-02
107	GO:0020037: heme binding	3.91E-02
108	GO:0016597: amino acid binding	3.92E-02
109	GO:0016168: chlorophyll binding	4.25E-02
110	GO:0008236: serine-type peptidase activity	4.76E-02
111	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0010170: glucose-1-phosphate adenylyltransferase complex	0.00E+00
2	GO:0009507: chloroplast	1.25E-24
3	GO:0009570: chloroplast stroma	1.57E-16
4	GO:0009535: chloroplast thylakoid membrane	6.17E-12
5	GO:0009534: chloroplast thylakoid	3.03E-11
6	GO:0009941: chloroplast envelope	2.17E-08
7	GO:0031969: chloroplast membrane	2.66E-07
8	GO:0009543: chloroplast thylakoid lumen	1.76E-05
9	GO:0009579: thylakoid	2.61E-05
10	GO:0009706: chloroplast inner membrane	1.02E-04
11	GO:0031977: thylakoid lumen	2.21E-04
12	GO:0010007: magnesium chelatase complex	1.11E-03
13	GO:0009840: chloroplastic endopeptidase Clp complex	4.06E-03
14	GO:0016020: membrane	4.96E-03
15	GO:0012507: ER to Golgi transport vesicle membrane	5.57E-03
16	GO:0005763: mitochondrial small ribosomal subunit	7.24E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.24E-03
18	GO:0031901: early endosome membrane	7.24E-03
19	GO:0000159: protein phosphatase type 2A complex	1.00E-02
20	GO:0031201: SNARE complex	1.06E-02
21	GO:0032040: small-subunit processome	1.11E-02
22	GO:0009508: plastid chromosome	1.21E-02
23	GO:0030095: chloroplast photosystem II	1.32E-02
24	GO:0005789: endoplasmic reticulum membrane	1.35E-02
25	GO:0030076: light-harvesting complex	1.43E-02
26	GO:0015935: small ribosomal subunit	1.91E-02
27	GO:0009532: plastid stroma	1.91E-02
28	GO:0005840: ribosome	1.98E-02
29	GO:0009536: plastid	2.58E-02
30	GO:0009295: nucleoid	3.77E-02
31	GO:0030529: intracellular ribonucleoprotein complex	4.09E-02
32	GO:0009707: chloroplast outer membrane	4.93E-02