co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G08000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070979: protein K11-linked ubiquitination	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
4	GO:0006573: valine metabolic process	0.00E+00
5	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
6	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
7	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
8	GO:0080110: sporopollenin biosynthetic process	3.97E-05
9	GO:0045038: protein import into chloroplast thylakoid membrane	3.97E-05
10	GO:0042372: phylloquinone biosynthetic process	8.20E-05
11	GO:0006353: DNA-templated transcription, termination	1.40E-04
12	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	1.80E-04
13	GO:0009090: homoserine biosynthetic process	1.80E-04
14	GO:0043266: regulation of potassium ion transport	1.80E-04
15	GO:0006551: leucine metabolic process	1.80E-04
16	GO:2000021: regulation of ion homeostasis	1.80E-04
17	GO:0010024: phytochromobilin biosynthetic process	4.05E-04
18	GO:0060359: response to ammonium ion	4.05E-04
19	GO:0001682: tRNA 5'-leader removal	4.05E-04
20	GO:0006788: heme oxidation	6.61E-04
21	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	6.61E-04
22	GO:0031145: anaphase-promoting complex-dependent catabolic process	6.61E-04
23	GO:0043157: response to cation stress	6.61E-04
24	GO:0030071: regulation of mitotic metaphase/anaphase transition	9.45E-04
25	GO:0010239: chloroplast mRNA processing	9.45E-04
26	GO:0042989: sequestering of actin monomers	9.45E-04
27	GO:1990019: protein storage vacuole organization	9.45E-04
28	GO:0046739: transport of virus in multicellular host	9.45E-04
29	GO:2001141: regulation of RNA biosynthetic process	9.45E-04
30	GO:0009067: aspartate family amino acid biosynthetic process	9.45E-04
31	GO:0010584: pollen exine formation	1.09E-03
32	GO:0048442: sepal development	1.25E-03
33	GO:0008033: tRNA processing	1.27E-03
34	GO:0016123: xanthophyll biosynthetic process	1.59E-03
35	GO:0032876: negative regulation of DNA endoreduplication	1.59E-03
36	GO:0030041: actin filament polymerization	1.59E-03
37	GO:0009107: lipoate biosynthetic process	1.59E-03
38	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.96E-03
39	GO:0009959: negative gravitropism	1.96E-03
40	GO:0016554: cytidine to uridine editing	1.96E-03
41	GO:0032973: amino acid export	1.96E-03
42	GO:0010190: cytochrome b6f complex assembly	1.96E-03
43	GO:0009648: photoperiodism	2.35E-03
44	GO:1901259: chloroplast rRNA processing	2.35E-03
45	GO:0010076: maintenance of floral meristem identity	2.35E-03
46	GO:0009082: branched-chain amino acid biosynthetic process	2.35E-03
47	GO:0017148: negative regulation of translation	2.35E-03
48	GO:0009099: valine biosynthetic process	2.35E-03
49	GO:0030488: tRNA methylation	2.35E-03
50	GO:0009088: threonine biosynthetic process	2.35E-03
51	GO:0043090: amino acid import	2.77E-03
52	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.77E-03
53	GO:0051510: regulation of unidimensional cell growth	2.77E-03
54	GO:0009451: RNA modification	2.98E-03
55	GO:0048564: photosystem I assembly	3.21E-03
56	GO:0042255: ribosome assembly	3.21E-03
57	GO:0070413: trehalose metabolism in response to stress	3.21E-03
58	GO:0032875: regulation of DNA endoreduplication	3.21E-03
59	GO:0000105: histidine biosynthetic process	3.21E-03
60	GO:0071482: cellular response to light stimulus	3.67E-03
61	GO:0010497: plasmodesmata-mediated intercellular transport	3.67E-03
62	GO:0009657: plastid organization	3.67E-03
63	GO:0009097: isoleucine biosynthetic process	3.67E-03
64	GO:0032544: plastid translation	3.67E-03
65	GO:0048507: meristem development	4.15E-03
66	GO:0080144: amino acid homeostasis	4.15E-03
67	GO:0000373: Group II intron splicing	4.15E-03
68	GO:0006839: mitochondrial transport	4.53E-03
69	GO:0009086: methionine biosynthetic process	4.65E-03
70	GO:1900865: chloroplast RNA modification	4.65E-03
71	GO:0009658: chloroplast organization	5.04E-03
72	GO:0048441: petal development	5.18E-03
73	GO:0006415: translational termination	5.72E-03
74	GO:0009089: lysine biosynthetic process via diaminopimelate	5.72E-03
75	GO:0006352: DNA-templated transcription, initiation	5.72E-03
76	GO:0048440: carpel development	7.46E-03
77	GO:0010207: photosystem II assembly	7.46E-03
78	GO:0090351: seedling development	8.08E-03
79	GO:0048316: seed development	8.42E-03
80	GO:0000162: tryptophan biosynthetic process	8.71E-03
81	GO:0007010: cytoskeleton organization	9.37E-03
82	GO:0005992: trehalose biosynthetic process	9.37E-03
83	GO:0008299: isoprenoid biosynthetic process	1.00E-02
84	GO:0006730: one-carbon metabolic process	1.14E-02
85	GO:0048443: stamen development	1.29E-02
86	GO:0019722: calcium-mediated signaling	1.29E-02
87	GO:0034220: ion transmembrane transport	1.44E-02
88	GO:0010087: phloem or xylem histogenesis	1.44E-02
89	GO:0010305: leaf vascular tissue pattern formation	1.52E-02
90	GO:0000302: response to reactive oxygen species	1.77E-02
91	GO:0016032: viral process	1.85E-02
92	GO:0032502: developmental process	1.85E-02
93	GO:0009630: gravitropism	1.85E-02
94	GO:0006914: autophagy	2.03E-02
95	GO:0007267: cell-cell signaling	2.11E-02
96	GO:0009416: response to light stimulus	2.25E-02
97	GO:0016126: sterol biosynthetic process	2.30E-02
98	GO:0010027: thylakoid membrane organization	2.30E-02
99	GO:0042254: ribosome biogenesis	2.69E-02
100	GO:0009910: negative regulation of flower development	3.08E-02
101	GO:0048527: lateral root development	3.08E-02
102	GO:0045087: innate immune response	3.28E-02
103	GO:0006631: fatty acid metabolic process	3.71E-02
104	GO:0015979: photosynthesis	3.73E-02
105	GO:0009640: photomorphogenesis	3.93E-02
106	GO:0008283: cell proliferation	3.93E-02
107	GO:0009644: response to high light intensity	4.16E-02
108	GO:0000165: MAPK cascade	4.50E-02
109	GO:0042538: hyperosmotic salinity response	4.62E-02
110	GO:0006364: rRNA processing	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005048: signal sequence binding	0.00E+00
2	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
3	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
4	GO:0050613: delta14-sterol reductase activity	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
7	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.80E-04
8	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.80E-04
9	GO:0003984: acetolactate synthase activity	1.80E-04
10	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	1.80E-04
11	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	4.05E-04
12	GO:0004412: homoserine dehydrogenase activity	4.05E-04
13	GO:0080041: ADP-ribose pyrophosphohydrolase activity	4.05E-04
14	GO:0004180: carboxypeptidase activity	6.61E-04
15	GO:0016992: lipoate synthase activity	6.61E-04
16	GO:0016805: dipeptidase activity	6.61E-04
17	GO:0070402: NADPH binding	6.61E-04
18	GO:0004072: aspartate kinase activity	9.45E-04
19	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	9.45E-04
20	GO:0016149: translation release factor activity, codon specific	9.45E-04
21	GO:0043023: ribosomal large subunit binding	9.45E-04
22	GO:0004300: enoyl-CoA hydratase activity	9.45E-04
23	GO:0005319: lipid transporter activity	1.25E-03
24	GO:0016987: sigma factor activity	1.25E-03
25	GO:0004392: heme oxygenase (decyclizing) activity	1.25E-03
26	GO:0001053: plastid sigma factor activity	1.25E-03
27	GO:0050662: coenzyme binding	1.47E-03
28	GO:0003785: actin monomer binding	1.59E-03
29	GO:0019843: rRNA binding	1.93E-03
30	GO:0004526: ribonuclease P activity	1.96E-03
31	GO:0016208: AMP binding	1.96E-03
32	GO:0016597: amino acid binding	2.29E-03
33	GO:0004656: procollagen-proline 4-dioxygenase activity	2.35E-03
34	GO:0008312: 7S RNA binding	3.21E-03
35	GO:0043022: ribosome binding	3.21E-03
36	GO:0003747: translation release factor activity	4.15E-03
37	GO:0004805: trehalose-phosphatase activity	5.18E-03
38	GO:0005089: Rho guanyl-nucleotide exchange factor activity	5.72E-03
39	GO:0009982: pseudouridine synthase activity	6.86E-03
40	GO:0003690: double-stranded DNA binding	7.14E-03
41	GO:0008266: poly(U) RNA binding	7.46E-03
42	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.46E-03
43	GO:0031418: L-ascorbic acid binding	9.37E-03
44	GO:0051536: iron-sulfur cluster binding	9.37E-03
45	GO:0004519: endonuclease activity	1.21E-02
46	GO:0003727: single-stranded RNA binding	1.29E-02
47	GO:0016853: isomerase activity	1.60E-02
48	GO:0016791: phosphatase activity	2.03E-02
49	GO:0015250: water channel activity	2.30E-02
50	GO:0004721: phosphoprotein phosphatase activity	2.58E-02
51	GO:0003723: RNA binding	2.62E-02
52	GO:0004222: metalloendopeptidase activity	2.97E-02
53	GO:0030145: manganese ion binding	3.08E-02
54	GO:0003746: translation elongation factor activity	3.28E-02
55	GO:0050661: NADP binding	3.60E-02
56	GO:0004871: signal transducer activity	4.10E-02
57	GO:0043621: protein self-association	4.16E-02
58	GO:0035091: phosphatidylinositol binding	4.16E-02
59	GO:0003735: structural constituent of ribosome	4.40E-02
60	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.86E-02
61	GO:0016787: hydrolase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0009507: chloroplast	3.93E-21
3	GO:0080085: signal recognition particle, chloroplast targeting	1.55E-06
4	GO:0009570: chloroplast stroma	2.46E-05
5	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.75E-04
6	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.80E-04
7	GO:0009508: plastid chromosome	4.55E-04
8	GO:0042651: thylakoid membrane	7.77E-04
9	GO:0009295: nucleoid	2.16E-03
10	GO:0042807: central vacuole	2.77E-03
11	GO:0009501: amyloplast	3.21E-03
12	GO:0000326: protein storage vacuole	3.67E-03
13	GO:0005680: anaphase-promoting complex	4.15E-03
14	GO:0016604: nuclear body	4.65E-03
15	GO:0009535: chloroplast thylakoid membrane	5.84E-03
16	GO:0000311: plastid large ribosomal subunit	6.28E-03
17	GO:0031969: chloroplast membrane	6.63E-03
18	GO:0005938: cell cortex	6.86E-03
19	GO:0030176: integral component of endoplasmic reticulum membrane	8.08E-03
20	GO:0009941: chloroplast envelope	9.06E-03
21	GO:0009654: photosystem II oxygen evolving complex	1.00E-02
22	GO:0015629: actin cytoskeleton	1.22E-02
23	GO:0019898: extrinsic component of membrane	1.68E-02
24	GO:0009705: plant-type vacuole membrane	1.71E-02
25	GO:0005778: peroxisomal membrane	2.11E-02
26	GO:0030529: intracellular ribonucleoprotein complex	2.30E-02
27	GO:0009707: chloroplast outer membrane	2.77E-02
28	GO:0009579: thylakoid	2.81E-02
29	GO:0015934: large ribosomal subunit	3.08E-02
30	GO:0005743: mitochondrial inner membrane	4.48E-02