co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G07500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0080127: fruit septum development	0.00E+00
7	GO:0006664: glycolipid metabolic process	0.00E+00
8	GO:0046620: regulation of organ growth	1.48E-05
9	GO:0016131: brassinosteroid metabolic process	1.40E-04
10	GO:0005992: trehalose biosynthetic process	1.87E-04
11	GO:2000021: regulation of ion homeostasis	3.86E-04
12	GO:0090548: response to nitrate starvation	3.86E-04
13	GO:0000066: mitochondrial ornithine transport	3.86E-04
14	GO:0050801: ion homeostasis	3.86E-04
15	GO:0034757: negative regulation of iron ion transport	3.86E-04
16	GO:0051382: kinetochore assembly	3.86E-04
17	GO:1902025: nitrate import	3.86E-04
18	GO:0043266: regulation of potassium ion transport	3.86E-04
19	GO:0072387: flavin adenine dinucleotide metabolic process	3.86E-04
20	GO:0000373: Group II intron splicing	6.44E-04
21	GO:1900865: chloroplast RNA modification	7.60E-04
22	GO:0080009: mRNA methylation	8.38E-04
23	GO:0031297: replication fork processing	8.38E-04
24	GO:0010343: singlet oxygen-mediated programmed cell death	8.38E-04
25	GO:1901529: positive regulation of anion channel activity	8.38E-04
26	GO:1900871: chloroplast mRNA modification	8.38E-04
27	GO:0010617: circadian regulation of calcium ion oscillation	8.38E-04
28	GO:0010271: regulation of chlorophyll catabolic process	8.38E-04
29	GO:0006432: phenylalanyl-tRNA aminoacylation	8.38E-04
30	GO:0099402: plant organ development	8.38E-04
31	GO:0010582: floral meristem determinacy	1.16E-03
32	GO:0071398: cellular response to fatty acid	1.36E-03
33	GO:0030029: actin filament-based process	1.36E-03
34	GO:0010447: response to acidic pH	1.36E-03
35	GO:0031022: nuclear migration along microfilament	1.36E-03
36	GO:1902448: positive regulation of shade avoidance	1.36E-03
37	GO:0080117: secondary growth	1.36E-03
38	GO:1901672: positive regulation of systemic acquired resistance	1.36E-03
39	GO:0046836: glycolipid transport	1.96E-03
40	GO:0010371: regulation of gibberellin biosynthetic process	1.96E-03
41	GO:0051513: regulation of monopolar cell growth	1.96E-03
42	GO:0051639: actin filament network formation	1.96E-03
43	GO:0034059: response to anoxia	1.96E-03
44	GO:0010239: chloroplast mRNA processing	1.96E-03
45	GO:0009800: cinnamic acid biosynthetic process	1.96E-03
46	GO:1990019: protein storage vacuole organization	1.96E-03
47	GO:1901332: negative regulation of lateral root development	1.96E-03
48	GO:0040008: regulation of growth	2.40E-03
49	GO:0009926: auxin polar transport	2.60E-03
50	GO:0009755: hormone-mediated signaling pathway	2.63E-03
51	GO:0051764: actin crosslink formation	2.63E-03
52	GO:0048442: sepal development	2.63E-03
53	GO:0008295: spermidine biosynthetic process	2.63E-03
54	GO:0006021: inositol biosynthetic process	2.63E-03
55	GO:1902347: response to strigolactone	2.63E-03
56	GO:0009416: response to light stimulus	2.72E-03
57	GO:0071215: cellular response to abscisic acid stimulus	2.98E-03
58	GO:0010438: cellular response to sulfur starvation	3.37E-03
59	GO:0010158: abaxial cell fate specification	3.37E-03
60	GO:0080110: sporopollenin biosynthetic process	3.37E-03
61	GO:0010117: photoprotection	3.37E-03
62	GO:0046283: anthocyanin-containing compound metabolic process	3.37E-03
63	GO:0009904: chloroplast accumulation movement	3.37E-03
64	GO:0048827: phyllome development	4.17E-03
65	GO:0016554: cytidine to uridine editing	4.17E-03
66	GO:1901371: regulation of leaf morphogenesis	4.17E-03
67	GO:0006559: L-phenylalanine catabolic process	4.17E-03
68	GO:0060918: auxin transport	4.17E-03
69	GO:0048831: regulation of shoot system development	4.17E-03
70	GO:0010190: cytochrome b6f complex assembly	4.17E-03
71	GO:0003006: developmental process involved in reproduction	4.17E-03
72	GO:0009646: response to absence of light	4.40E-03
73	GO:0010310: regulation of hydrogen peroxide metabolic process	5.02E-03
74	GO:2000067: regulation of root morphogenesis	5.02E-03
75	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.02E-03
76	GO:0031930: mitochondria-nucleus signaling pathway	5.02E-03
77	GO:0010076: maintenance of floral meristem identity	5.02E-03
78	GO:0048509: regulation of meristem development	5.02E-03
79	GO:0009903: chloroplast avoidance movement	5.02E-03
80	GO:0000712: resolution of meiotic recombination intermediates	5.94E-03
81	GO:0006955: immune response	5.94E-03
82	GO:0010050: vegetative phase change	5.94E-03
83	GO:0010098: suspensor development	5.94E-03
84	GO:0051510: regulation of unidimensional cell growth	5.94E-03
85	GO:0000105: histidine biosynthetic process	6.90E-03
86	GO:0009819: drought recovery	6.90E-03
87	GO:0006402: mRNA catabolic process	6.90E-03
88	GO:0010439: regulation of glucosinolate biosynthetic process	6.90E-03
89	GO:0070413: trehalose metabolism in response to stress	6.90E-03
90	GO:0009850: auxin metabolic process	6.90E-03
91	GO:2000070: regulation of response to water deprivation	6.90E-03
92	GO:0007129: synapsis	7.92E-03
93	GO:0071482: cellular response to light stimulus	7.92E-03
94	GO:0009827: plant-type cell wall modification	7.92E-03
95	GO:0032544: plastid translation	7.92E-03
96	GO:0009051: pentose-phosphate shunt, oxidative branch	8.99E-03
97	GO:0006098: pentose-phosphate shunt	8.99E-03
98	GO:0048507: meristem development	8.99E-03
99	GO:0016573: histone acetylation	1.01E-02
100	GO:1900426: positive regulation of defense response to bacterium	1.01E-02
101	GO:0000160: phosphorelay signal transduction system	1.01E-02
102	GO:0009638: phototropism	1.01E-02
103	GO:0016571: histone methylation	1.01E-02
104	GO:0048441: petal development	1.13E-02
105	GO:0009299: mRNA transcription	1.13E-02
106	GO:0006535: cysteine biosynthetic process from serine	1.13E-02
107	GO:0009682: induced systemic resistance	1.25E-02
108	GO:0009733: response to auxin	1.36E-02
109	GO:0006790: sulfur compound metabolic process	1.38E-02
110	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.38E-02
111	GO:0010229: inflorescence development	1.51E-02
112	GO:0010075: regulation of meristem growth	1.51E-02
113	GO:0009725: response to hormone	1.51E-02
114	GO:0006094: gluconeogenesis	1.51E-02
115	GO:0009785: blue light signaling pathway	1.51E-02
116	GO:0006006: glucose metabolic process	1.51E-02
117	GO:2000028: regulation of photoperiodism, flowering	1.51E-02
118	GO:0010540: basipetal auxin transport	1.64E-02
119	GO:0009266: response to temperature stimulus	1.64E-02
120	GO:0048467: gynoecium development	1.64E-02
121	GO:0048440: carpel development	1.64E-02
122	GO:0009644: response to high light intensity	1.70E-02
123	GO:0009636: response to toxic substance	1.77E-02
124	GO:0046854: phosphatidylinositol phosphorylation	1.78E-02
125	GO:0010039: response to iron ion	1.78E-02
126	GO:0006863: purine nucleobase transport	1.92E-02
127	GO:0019762: glucosinolate catabolic process	1.92E-02
128	GO:2000377: regulation of reactive oxygen species metabolic process	2.07E-02
129	GO:0019344: cysteine biosynthetic process	2.07E-02
130	GO:0030150: protein import into mitochondrial matrix	2.07E-02
131	GO:0006338: chromatin remodeling	2.07E-02
132	GO:0051017: actin filament bundle assembly	2.07E-02
133	GO:0006289: nucleotide-excision repair	2.07E-02
134	GO:0009658: chloroplast organization	2.09E-02
135	GO:0009734: auxin-activated signaling pathway	2.11E-02
136	GO:0009736: cytokinin-activated signaling pathway	2.12E-02
137	GO:0010431: seed maturation	2.37E-02
138	GO:0016998: cell wall macromolecule catabolic process	2.37E-02
139	GO:0016226: iron-sulfur cluster assembly	2.53E-02
140	GO:0048316: seed development	2.59E-02
141	GO:0009625: response to insect	2.69E-02
142	GO:0009693: ethylene biosynthetic process	2.69E-02
143	GO:0010082: regulation of root meristem growth	2.69E-02
144	GO:0010584: pollen exine formation	2.86E-02
145	GO:0048443: stamen development	2.86E-02
146	GO:0016117: carotenoid biosynthetic process	3.03E-02
147	GO:0070417: cellular response to cold	3.03E-02
148	GO:0010087: phloem or xylem histogenesis	3.20E-02
149	GO:0010118: stomatal movement	3.20E-02
150	GO:0010182: sugar mediated signaling pathway	3.38E-02
151	GO:0009741: response to brassinosteroid	3.38E-02
152	GO:0010268: brassinosteroid homeostasis	3.38E-02
153	GO:0045489: pectin biosynthetic process	3.38E-02
154	GO:0006520: cellular amino acid metabolic process	3.38E-02
155	GO:0007018: microtubule-based movement	3.55E-02
156	GO:0042752: regulation of circadian rhythm	3.55E-02
157	GO:0048544: recognition of pollen	3.55E-02
158	GO:0055072: iron ion homeostasis	3.74E-02
159	GO:0048825: cotyledon development	3.74E-02
160	GO:0016132: brassinosteroid biosynthetic process	3.92E-02
161	GO:0071554: cell wall organization or biogenesis	3.92E-02
162	GO:0007264: small GTPase mediated signal transduction	4.11E-02
163	GO:0010583: response to cyclopentenone	4.11E-02
164	GO:0019761: glucosinolate biosynthetic process	4.11E-02
165	GO:0006464: cellular protein modification process	4.49E-02
166	GO:0051607: defense response to virus	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0004401: histidinol-phosphatase activity	0.00E+00
3	GO:0004805: trehalose-phosphatase activity	5.00E-05
4	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.86E-04
5	GO:0005227: calcium activated cation channel activity	3.86E-04
6	GO:0042834: peptidoglycan binding	3.86E-04
7	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	3.86E-04
8	GO:0005290: L-histidine transmembrane transporter activity	3.86E-04
9	GO:0008395: steroid hydroxylase activity	3.86E-04
10	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.86E-04
11	GO:0017118: lipoyltransferase activity	8.38E-04
12	GO:0043425: bHLH transcription factor binding	8.38E-04
13	GO:0004047: aminomethyltransferase activity	8.38E-04
14	GO:0004766: spermidine synthase activity	8.38E-04
15	GO:0052832: inositol monophosphate 3-phosphatase activity	8.38E-04
16	GO:0008805: carbon-monoxide oxygenase activity	8.38E-04
17	GO:0008934: inositol monophosphate 1-phosphatase activity	8.38E-04
18	GO:0052833: inositol monophosphate 4-phosphatase activity	8.38E-04
19	GO:0000064: L-ornithine transmembrane transporter activity	8.38E-04
20	GO:0004826: phenylalanine-tRNA ligase activity	8.38E-04
21	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	8.38E-04
22	GO:0050736: O-malonyltransferase activity	8.38E-04
23	GO:0009884: cytokinin receptor activity	8.38E-04
24	GO:0050017: L-3-cyanoalanine synthase activity	8.38E-04
25	GO:0005034: osmosensor activity	1.36E-03
26	GO:0045548: phenylalanine ammonia-lyase activity	1.36E-03
27	GO:0004148: dihydrolipoyl dehydrogenase activity	1.36E-03
28	GO:0009882: blue light photoreceptor activity	1.96E-03
29	GO:0001872: (1->3)-beta-D-glucan binding	1.96E-03
30	GO:0015189: L-lysine transmembrane transporter activity	1.96E-03
31	GO:0017089: glycolipid transporter activity	1.96E-03
32	GO:0015181: arginine transmembrane transporter activity	1.96E-03
33	GO:0005345: purine nucleobase transmembrane transporter activity	2.27E-03
34	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.63E-03
35	GO:0051861: glycolipid binding	2.63E-03
36	GO:0052793: pectin acetylesterase activity	2.63E-03
37	GO:0070628: proteasome binding	2.63E-03
38	GO:0046527: glucosyltransferase activity	2.63E-03
39	GO:0042277: peptide binding	2.63E-03
40	GO:0005471: ATP:ADP antiporter activity	3.37E-03
41	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.37E-03
42	GO:0004523: RNA-DNA hybrid ribonuclease activity	3.37E-03
43	GO:0003690: double-stranded DNA binding	3.97E-03
44	GO:0004332: fructose-bisphosphate aldolase activity	4.17E-03
45	GO:0004709: MAP kinase kinase kinase activity	4.17E-03
46	GO:0000293: ferric-chelate reductase activity	4.17E-03
47	GO:0031593: polyubiquitin binding	4.17E-03
48	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	4.17E-03
49	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	4.17E-03
50	GO:0050662: coenzyme binding	4.40E-03
51	GO:0019900: kinase binding	5.02E-03
52	GO:0004124: cysteine synthase activity	5.02E-03
53	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.02E-03
54	GO:0004518: nuclease activity	5.39E-03
55	GO:0016413: O-acetyltransferase activity	6.90E-03
56	GO:0003723: RNA binding	7.21E-03
57	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	8.99E-03
58	GO:0071949: FAD binding	8.99E-03
59	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.10E-02
60	GO:0030234: enzyme regulator activity	1.13E-02
61	GO:0004673: protein histidine kinase activity	1.13E-02
62	GO:0000049: tRNA binding	1.38E-02
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.49E-02
64	GO:0000155: phosphorelay sensor kinase activity	1.51E-02
65	GO:0009982: pseudouridine synthase activity	1.51E-02
66	GO:0015266: protein channel activity	1.51E-02
67	GO:0042802: identical protein binding	1.63E-02
68	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.92E-02
69	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.92E-02
70	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.92E-02
71	GO:0031418: L-ascorbic acid binding	2.07E-02
72	GO:0043130: ubiquitin binding	2.07E-02
73	GO:0043424: protein histidine kinase binding	2.22E-02
74	GO:0003964: RNA-directed DNA polymerase activity	2.37E-02
75	GO:0005199: structural constituent of cell wall	3.38E-02
76	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.38E-02
77	GO:0010181: FMN binding	3.55E-02
78	GO:0004871: signal transducer activity	3.62E-02
79	GO:0019901: protein kinase binding	3.74E-02
80	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.92E-02
81	GO:0030170: pyridoxal phosphate binding	4.19E-02
82	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.29E-02
83	GO:0051015: actin filament binding	4.30E-02
84	GO:0000156: phosphorelay response regulator activity	4.30E-02
85	GO:0016759: cellulose synthase activity	4.49E-02
86	GO:0003684: damaged DNA binding	4.49E-02
87	GO:0016791: phosphatase activity	4.49E-02
88	GO:0005200: structural constituent of cytoskeleton	4.69E-02
89	GO:0016491: oxidoreductase activity	4.82E-02
90	GO:0004519: endonuclease activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0071821: FANCM-MHF complex	3.86E-04
3	GO:0043240: Fanconi anaemia nuclear complex	3.86E-04
4	GO:0009513: etioplast	8.38E-04
5	GO:0016605: PML body	1.36E-03
6	GO:0009509: chromoplast	1.36E-03
7	GO:0032432: actin filament bundle	1.96E-03
8	GO:0048226: Casparian strip	6.90E-03
9	GO:0009501: amyloplast	6.90E-03
10	GO:0031305: integral component of mitochondrial inner membrane	6.90E-03
11	GO:0010494: cytoplasmic stress granule	8.99E-03
12	GO:0016604: nuclear body	1.01E-02
13	GO:0005884: actin filament	1.25E-02
14	GO:0005578: proteinaceous extracellular matrix	1.51E-02
15	GO:0030095: chloroplast photosystem II	1.64E-02
16	GO:0009654: photosystem II oxygen evolving complex	2.22E-02
17	GO:0042651: thylakoid membrane	2.22E-02
18	GO:0005768: endosome	2.57E-02
19	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.86E-02
20	GO:0012505: endomembrane system	2.93E-02
21	GO:0005871: kinesin complex	3.03E-02
22	GO:0005770: late endosome	3.38E-02
23	GO:0019898: extrinsic component of membrane	3.74E-02
24	GO:0005634: nucleus	4.15E-02
25	GO:0005759: mitochondrial matrix	4.73E-02