co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0046620: regulation of organ growth	2.32E-04
4	GO:0034757: negative regulation of iron ion transport	2.51E-04
5	GO:0000373: Group II intron splicing	3.46E-04
6	GO:0010271: regulation of chlorophyll catabolic process	5.53E-04
7	GO:0006432: phenylalanyl-tRNA aminoacylation	5.53E-04
8	GO:0080009: mRNA methylation	5.53E-04
9	GO:0001682: tRNA 5'-leader removal	5.53E-04
10	GO:0010582: floral meristem determinacy	6.33E-04
11	GO:0080117: secondary growth	8.99E-04
12	GO:0071398: cellular response to fatty acid	8.99E-04
13	GO:0030029: actin filament-based process	8.99E-04
14	GO:0031022: nuclear migration along microfilament	8.99E-04
15	GO:0051017: actin filament bundle assembly	1.11E-03
16	GO:0005992: trehalose biosynthetic process	1.11E-03
17	GO:2000904: regulation of starch metabolic process	1.28E-03
18	GO:0051513: regulation of monopolar cell growth	1.28E-03
19	GO:0051639: actin filament network formation	1.28E-03
20	GO:0010239: chloroplast mRNA processing	1.28E-03
21	GO:0044211: CTP salvage	1.28E-03
22	GO:0008295: spermidine biosynthetic process	1.71E-03
23	GO:0044206: UMP salvage	1.71E-03
24	GO:0006021: inositol biosynthetic process	1.71E-03
25	GO:0009755: hormone-mediated signaling pathway	1.71E-03
26	GO:0051764: actin crosslink formation	1.71E-03
27	GO:0008033: tRNA processing	2.02E-03
28	GO:0080110: sporopollenin biosynthetic process	2.19E-03
29	GO:0016131: brassinosteroid metabolic process	2.19E-03
30	GO:0009904: chloroplast accumulation movement	2.19E-03
31	GO:0009107: lipoate biosynthetic process	2.19E-03
32	GO:0010438: cellular response to sulfur starvation	2.19E-03
33	GO:0010158: abaxial cell fate specification	2.19E-03
34	GO:0009696: salicylic acid metabolic process	2.19E-03
35	GO:0048831: regulation of shoot system development	2.70E-03
36	GO:0003006: developmental process involved in reproduction	2.70E-03
37	GO:0016554: cytidine to uridine editing	2.70E-03
38	GO:0006206: pyrimidine nucleobase metabolic process	2.70E-03
39	GO:0031930: mitochondria-nucleus signaling pathway	3.24E-03
40	GO:0048509: regulation of meristem development	3.24E-03
41	GO:0009903: chloroplast avoidance movement	3.24E-03
42	GO:0009648: photoperiodism	3.24E-03
43	GO:0010098: suspensor development	3.82E-03
44	GO:0010050: vegetative phase change	3.82E-03
45	GO:0070413: trehalose metabolism in response to stress	4.44E-03
46	GO:0010439: regulation of glucosinolate biosynthetic process	4.44E-03
47	GO:0009850: auxin metabolic process	4.44E-03
48	GO:2000070: regulation of response to water deprivation	4.44E-03
49	GO:0000105: histidine biosynthetic process	4.44E-03
50	GO:0009231: riboflavin biosynthetic process	4.44E-03
51	GO:0009819: drought recovery	4.44E-03
52	GO:0032544: plastid translation	5.08E-03
53	GO:0071482: cellular response to light stimulus	5.08E-03
54	GO:0009827: plant-type cell wall modification	5.08E-03
55	GO:0007186: G-protein coupled receptor signaling pathway	5.08E-03
56	GO:0000160: phosphorelay signal transduction system	5.30E-03
57	GO:0009451: RNA modification	5.46E-03
58	GO:0048507: meristem development	5.75E-03
59	GO:0009867: jasmonic acid mediated signaling pathway	6.39E-03
60	GO:0016571: histone methylation	6.46E-03
61	GO:0016573: histone acetylation	6.46E-03
62	GO:0009098: leucine biosynthetic process	6.46E-03
63	GO:0010018: far-red light signaling pathway	6.46E-03
64	GO:1900865: chloroplast RNA modification	6.46E-03
65	GO:0043085: positive regulation of catalytic activity	7.96E-03
66	GO:0009682: induced systemic resistance	7.96E-03
67	GO:0009926: auxin polar transport	8.24E-03
68	GO:0045037: protein import into chloroplast stroma	8.75E-03
69	GO:0010105: negative regulation of ethylene-activated signaling pathway	8.75E-03
70	GO:0006790: sulfur compound metabolic process	8.75E-03
71	GO:0009636: response to toxic substance	9.26E-03
72	GO:0009691: cytokinin biosynthetic process	9.57E-03
73	GO:0009266: response to temperature stimulus	1.04E-02
74	GO:0048467: gynoecium development	1.04E-02
75	GO:0009736: cytokinin-activated signaling pathway	1.11E-02
76	GO:0006364: rRNA processing	1.11E-02
77	GO:0046854: phosphatidylinositol phosphorylation	1.13E-02
78	GO:0042753: positive regulation of circadian rhythm	1.22E-02
79	GO:0030150: protein import into mitochondrial matrix	1.31E-02
80	GO:0006338: chromatin remodeling	1.31E-02
81	GO:0048316: seed development	1.36E-02
82	GO:0016226: iron-sulfur cluster assembly	1.60E-02
83	GO:0009625: response to insect	1.71E-02
84	GO:0009693: ethylene biosynthetic process	1.71E-02
85	GO:0071215: cellular response to abscisic acid stimulus	1.71E-02
86	GO:0010584: pollen exine formation	1.81E-02
87	GO:0070417: cellular response to cold	1.92E-02
88	GO:0016117: carotenoid biosynthetic process	1.92E-02
89	GO:0010087: phloem or xylem histogenesis	2.02E-02
90	GO:0009958: positive gravitropism	2.14E-02
91	GO:0006662: glycerol ether metabolic process	2.14E-02
92	GO:0010182: sugar mediated signaling pathway	2.14E-02
93	GO:0009741: response to brassinosteroid	2.14E-02
94	GO:0010268: brassinosteroid homeostasis	2.14E-02
95	GO:0045489: pectin biosynthetic process	2.14E-02
96	GO:0048544: recognition of pollen	2.25E-02
97	GO:0007018: microtubule-based movement	2.25E-02
98	GO:0000302: response to reactive oxygen species	2.48E-02
99	GO:0010583: response to cyclopentenone	2.60E-02
100	GO:0007264: small GTPase mediated signal transduction	2.60E-02
101	GO:0040008: regulation of growth	2.63E-02
102	GO:1901657: glycosyl compound metabolic process	2.72E-02
103	GO:0009639: response to red or far red light	2.85E-02
104	GO:0006464: cellular protein modification process	2.85E-02
105	GO:0009734: auxin-activated signaling pathway	3.06E-02
106	GO:0051607: defense response to virus	3.10E-02
107	GO:0007166: cell surface receptor signaling pathway	3.14E-02
108	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.36E-02
109	GO:0010029: regulation of seed germination	3.36E-02
110	GO:0009627: systemic acquired resistance	3.49E-02
111	GO:0016311: dephosphorylation	3.76E-02
112	GO:0009733: response to auxin	3.85E-02
113	GO:0030244: cellulose biosynthetic process	3.90E-02
114	GO:0009817: defense response to fungus, incompatible interaction	3.90E-02
115	GO:0009416: response to light stimulus	4.07E-02
116	GO:0006499: N-terminal protein myristoylation	4.18E-02
117	GO:0009834: plant-type secondary cell wall biogenesis	4.18E-02
118	GO:0009793: embryo development ending in seed dormancy	4.23E-02
119	GO:0009658: chloroplast organization	4.24E-02
120	GO:0009910: negative regulation of flower development	4.32E-02
121	GO:0006970: response to osmotic stress	4.56E-02
122	GO:0034599: cellular response to oxidative stress	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
3	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
4	GO:0052381: tRNA dimethylallyltransferase activity	2.51E-04
5	GO:0008395: steroid hydroxylase activity	2.51E-04
6	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.51E-04
7	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.51E-04
8	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.51E-04
9	GO:0004805: trehalose-phosphatase activity	4.80E-04
10	GO:0050736: O-malonyltransferase activity	5.53E-04
11	GO:0009884: cytokinin receptor activity	5.53E-04
12	GO:0017118: lipoyltransferase activity	5.53E-04
13	GO:0003852: 2-isopropylmalate synthase activity	5.53E-04
14	GO:0016415: octanoyltransferase activity	5.53E-04
15	GO:0004047: aminomethyltransferase activity	5.53E-04
16	GO:0004766: spermidine synthase activity	5.53E-04
17	GO:0052832: inositol monophosphate 3-phosphatase activity	5.53E-04
18	GO:0008805: carbon-monoxide oxygenase activity	5.53E-04
19	GO:0008934: inositol monophosphate 1-phosphatase activity	5.53E-04
20	GO:0052833: inositol monophosphate 4-phosphatase activity	5.53E-04
21	GO:0004826: phenylalanine-tRNA ligase activity	5.53E-04
22	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	5.53E-04
23	GO:0005034: osmosensor activity	8.99E-04
24	GO:0004148: dihydrolipoyl dehydrogenase activity	8.99E-04
25	GO:0003723: RNA binding	9.73E-04
26	GO:0080031: methyl salicylate esterase activity	1.28E-03
27	GO:0001872: (1->3)-beta-D-glucan binding	1.28E-03
28	GO:0004845: uracil phosphoribosyltransferase activity	1.71E-03
29	GO:0005525: GTP binding	2.04E-03
30	GO:0005471: ATP:ADP antiporter activity	2.19E-03
31	GO:0004523: RNA-DNA hybrid ribonuclease activity	2.19E-03
32	GO:0080030: methyl indole-3-acetate esterase activity	2.70E-03
33	GO:0004526: ribonuclease P activity	2.70E-03
34	GO:0004709: MAP kinase kinase kinase activity	2.70E-03
35	GO:0051015: actin filament binding	3.05E-03
36	GO:0004849: uridine kinase activity	3.24E-03
37	GO:0019900: kinase binding	3.24E-03
38	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.24E-03
39	GO:0016832: aldehyde-lyase activity	3.24E-03
40	GO:0043022: ribosome binding	4.44E-03
41	GO:0004519: endonuclease activity	5.41E-03
42	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.75E-03
43	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.83E-03
44	GO:0004673: protein histidine kinase activity	7.20E-03
45	GO:0008047: enzyme activator activity	7.20E-03
46	GO:0000049: tRNA binding	8.75E-03
47	GO:0000155: phosphorelay sensor kinase activity	9.57E-03
48	GO:0015266: protein channel activity	9.57E-03
49	GO:0050660: flavin adenine dinucleotide binding	1.11E-02
50	GO:0031418: L-ascorbic acid binding	1.31E-02
51	GO:0043424: protein histidine kinase binding	1.41E-02
52	GO:0003964: RNA-directed DNA polymerase activity	1.50E-02
53	GO:0016740: transferase activity	1.54E-02
54	GO:0004871: signal transducer activity	1.62E-02
55	GO:0016491: oxidoreductase activity	1.65E-02
56	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.73E-02
57	GO:0047134: protein-disulfide reductase activity	1.92E-02
58	GO:0010181: FMN binding	2.25E-02
59	GO:0050662: coenzyme binding	2.25E-02
60	GO:0004791: thioredoxin-disulfide reductase activity	2.25E-02
61	GO:0019901: protein kinase binding	2.36E-02
62	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.56E-02
63	GO:0004518: nuclease activity	2.60E-02
64	GO:0000156: phosphorelay response regulator activity	2.72E-02
65	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.72E-02
66	GO:0016791: phosphatase activity	2.85E-02
67	GO:0005200: structural constituent of cytoskeleton	2.97E-02
68	GO:0008289: lipid binding	3.01E-02
69	GO:0016413: O-acetyltransferase activity	3.10E-02
70	GO:0042802: identical protein binding	3.49E-02
71	GO:0030247: polysaccharide binding	3.62E-02
72	GO:0004721: phosphoprotein phosphatase activity	3.62E-02
73	GO:0102483: scopolin beta-glucosidase activity	3.62E-02
74	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.90E-02
75	GO:0050897: cobalt ion binding	4.32E-02
76	GO:0003676: nucleic acid binding	4.60E-02
77	GO:0003697: single-stranded DNA binding	4.61E-02
78	GO:0003993: acid phosphatase activity	4.76E-02
79	GO:0008422: beta-glucosidase activity	4.90E-02
80	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0009507: chloroplast	4.83E-05
4	GO:0009513: etioplast	5.53E-04
5	GO:0009509: chromoplast	8.99E-04
6	GO:0032432: actin filament bundle	1.28E-03
7	GO:0031305: integral component of mitochondrial inner membrane	4.44E-03
8	GO:0009501: amyloplast	4.44E-03
9	GO:0009707: chloroplast outer membrane	5.04E-03
10	GO:0005884: actin filament	7.96E-03
11	GO:0005856: cytoskeleton	9.26E-03
12	GO:0016602: CCAAT-binding factor complex	9.57E-03
13	GO:0030095: chloroplast photosystem II	1.04E-02
14	GO:0031969: chloroplast membrane	1.22E-02
15	GO:0009654: photosystem II oxygen evolving complex	1.41E-02
16	GO:0015629: actin cytoskeleton	1.71E-02
17	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.81E-02
18	GO:0005871: kinesin complex	1.92E-02
19	GO:0005623: cell	2.05E-02
20	GO:0019898: extrinsic component of membrane	2.36E-02
21	GO:0031965: nuclear membrane	2.36E-02
22	GO:0005759: mitochondrial matrix	2.50E-02
23	GO:0030529: intracellular ribonucleoprotein complex	3.23E-02
24	GO:0000151: ubiquitin ligase complex	3.90E-02
25	GO:0009536: plastid	4.37E-02