Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G06890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010055: atrichoblast differentiation0.00E+00
2GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
3GO:1902001: fatty acid transmembrane transport0.00E+00
4GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
5GO:0009312: oligosaccharide biosynthetic process0.00E+00
6GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
7GO:0046865: terpenoid transport0.00E+00
8GO:0018063: cytochrome c-heme linkage0.00E+00
9GO:0051553: flavone biosynthetic process0.00E+00
10GO:0010324: membrane invagination0.00E+00
11GO:0010112: regulation of systemic acquired resistance1.31E-06
12GO:0071456: cellular response to hypoxia1.49E-06
13GO:0051707: response to other organism1.07E-05
14GO:0042742: defense response to bacterium2.55E-05
15GO:0009617: response to bacterium6.05E-05
16GO:0009751: response to salicylic acid1.23E-04
17GO:0009643: photosynthetic acclimation3.06E-04
18GO:0009759: indole glucosinolate biosynthetic process3.06E-04
19GO:0006952: defense response3.59E-04
20GO:0015760: glucose-6-phosphate transport5.06E-04
21GO:0043547: positive regulation of GTPase activity5.06E-04
22GO:1990641: response to iron ion starvation5.06E-04
23GO:0033306: phytol metabolic process5.06E-04
24GO:0009700: indole phytoalexin biosynthetic process5.06E-04
25GO:0050691: regulation of defense response to virus by host5.06E-04
26GO:0010230: alternative respiration5.06E-04
27GO:0034214: protein hexamerization5.06E-04
28GO:0009968: negative regulation of signal transduction5.06E-04
29GO:1990542: mitochondrial transmembrane transport5.06E-04
30GO:0032107: regulation of response to nutrient levels5.06E-04
31GO:1900057: positive regulation of leaf senescence5.24E-04
32GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline6.54E-04
33GO:0010120: camalexin biosynthetic process7.96E-04
34GO:0009636: response to toxic substance9.23E-04
35GO:0009835: fruit ripening9.51E-04
36GO:0010200: response to chitin9.71E-04
37GO:0010193: response to ozone1.04E-03
38GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.09E-03
39GO:0009838: abscission1.09E-03
40GO:0080181: lateral root branching1.09E-03
41GO:0055088: lipid homeostasis1.09E-03
42GO:0006101: citrate metabolic process1.09E-03
43GO:0000719: photoreactive repair1.09E-03
44GO:0019374: galactolipid metabolic process1.09E-03
45GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex1.09E-03
46GO:0015908: fatty acid transport1.09E-03
47GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine1.09E-03
48GO:0044419: interspecies interaction between organisms1.09E-03
49GO:0019725: cellular homeostasis1.09E-03
50GO:0015712: hexose phosphate transport1.09E-03
51GO:0051258: protein polymerization1.09E-03
52GO:0071668: plant-type cell wall assembly1.09E-03
53GO:0010150: leaf senescence1.10E-03
54GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.12E-03
55GO:0006979: response to oxidative stress1.14E-03
56GO:0009737: response to abscisic acid1.22E-03
57GO:0007166: cell surface receptor signaling pathway1.40E-03
58GO:0009684: indoleacetic acid biosynthetic process1.51E-03
59GO:0051607: defense response to virus1.54E-03
60GO:0000266: mitochondrial fission1.73E-03
61GO:0045037: protein import into chloroplast stroma1.73E-03
62GO:0010186: positive regulation of cellular defense response1.78E-03
63GO:0006065: UDP-glucuronate biosynthetic process1.78E-03
64GO:0015783: GDP-fucose transport1.78E-03
65GO:0010476: gibberellin mediated signaling pathway1.78E-03
66GO:0010325: raffinose family oligosaccharide biosynthetic process1.78E-03
67GO:0015692: lead ion transport1.78E-03
68GO:0052546: cell wall pectin metabolic process1.78E-03
69GO:0015714: phosphoenolpyruvate transport1.78E-03
70GO:0015695: organic cation transport1.78E-03
71GO:0080168: abscisic acid transport1.78E-03
72GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.78E-03
73GO:0006954: inflammatory response1.78E-03
74GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process1.78E-03
75GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.78E-03
76GO:0035436: triose phosphate transmembrane transport1.78E-03
77GO:0080163: regulation of protein serine/threonine phosphatase activity1.78E-03
78GO:0071398: cellular response to fatty acid1.78E-03
79GO:0009620: response to fungus1.81E-03
80GO:0009611: response to wounding2.02E-03
81GO:0009753: response to jasmonic acid2.26E-03
82GO:0007275: multicellular organism development2.50E-03
83GO:0070301: cellular response to hydrogen peroxide2.58E-03
84GO:0002239: response to oomycetes2.58E-03
85GO:0010731: protein glutathionylation2.58E-03
86GO:0015696: ammonium transport2.58E-03
87GO:0071323: cellular response to chitin2.58E-03
88GO:0051289: protein homotetramerization2.58E-03
89GO:0080024: indolebutyric acid metabolic process2.58E-03
90GO:0055070: copper ion homeostasis2.58E-03
91GO:0001676: long-chain fatty acid metabolic process2.58E-03
92GO:0010116: positive regulation of abscisic acid biosynthetic process2.58E-03
93GO:0000162: tryptophan biosynthetic process2.77E-03
94GO:0080147: root hair cell development3.08E-03
95GO:0010109: regulation of photosynthesis3.48E-03
96GO:0060548: negative regulation of cell death3.48E-03
97GO:0009939: positive regulation of gibberellic acid mediated signaling pathway3.48E-03
98GO:0048830: adventitious root development3.48E-03
99GO:1901002: positive regulation of response to salt stress3.48E-03
100GO:0072488: ammonium transmembrane transport3.48E-03
101GO:0015713: phosphoglycerate transport3.48E-03
102GO:0015867: ATP transport3.48E-03
103GO:0009229: thiamine diphosphate biosynthetic process4.46E-03
104GO:0034052: positive regulation of plant-type hypersensitive response4.46E-03
105GO:0006097: glyoxylate cycle4.46E-03
106GO:0006012: galactose metabolic process4.47E-03
107GO:0009693: ethylene biosynthetic process4.47E-03
108GO:0040008: regulation of growth4.49E-03
109GO:0015866: ADP transport5.53E-03
110GO:0006777: Mo-molybdopterin cofactor biosynthetic process5.53E-03
111GO:0010256: endomembrane system organization5.53E-03
112GO:0033365: protein localization to organelle5.53E-03
113GO:0009228: thiamine biosynthetic process5.53E-03
114GO:0031347: regulation of defense response5.58E-03
115GO:0015031: protein transport5.65E-03
116GO:0042391: regulation of membrane potential5.70E-03
117GO:0010182: sugar mediated signaling pathway6.15E-03
118GO:0042372: phylloquinone biosynthetic process6.67E-03
119GO:0045926: negative regulation of growth6.67E-03
120GO:0048444: floral organ morphogenesis6.67E-03
121GO:0006623: protein targeting to vacuole7.10E-03
122GO:0009749: response to glucose7.10E-03
123GO:0002229: defense response to oomycetes7.60E-03
124GO:0050832: defense response to fungus7.67E-03
125GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway7.90E-03
126GO:1900056: negative regulation of leaf senescence7.90E-03
127GO:0000122: negative regulation of transcription from RNA polymerase II promoter7.90E-03
128GO:1902074: response to salt7.90E-03
129GO:0010044: response to aluminum ion7.90E-03
130GO:0006102: isocitrate metabolic process9.20E-03
131GO:0016559: peroxisome fission9.20E-03
132GO:0006644: phospholipid metabolic process9.20E-03
133GO:0030091: protein repair9.20E-03
134GO:0009819: drought recovery9.20E-03
135GO:0043068: positive regulation of programmed cell death9.20E-03
136GO:0006605: protein targeting9.20E-03
137GO:0031540: regulation of anthocyanin biosynthetic process9.20E-03
138GO:0010208: pollen wall assembly1.06E-02
139GO:0006997: nucleus organization1.06E-02
140GO:0010204: defense response signaling pathway, resistance gene-independent1.06E-02
141GO:0017004: cytochrome complex assembly1.06E-02
142GO:0010029: regulation of seed germination1.17E-02
143GO:0015780: nucleotide-sugar transport1.20E-02
144GO:0007338: single fertilization1.20E-02
145GO:0019432: triglyceride biosynthetic process1.20E-02
146GO:0009056: catabolic process1.20E-02
147GO:0009627: systemic acquired resistance1.24E-02
148GO:0080167: response to karrikin1.30E-02
149GO:0090332: stomatal closure1.35E-02
150GO:0048268: clathrin coat assembly1.35E-02
151GO:0008202: steroid metabolic process1.35E-02
152GO:0009817: defense response to fungus, incompatible interaction1.45E-02
153GO:0009641: shade avoidance1.51E-02
154GO:0016441: posttranscriptional gene silencing1.51E-02
155GO:0010629: negative regulation of gene expression1.51E-02
156GO:0051555: flavonol biosynthetic process1.51E-02
157GO:0009870: defense response signaling pathway, resistance gene-dependent1.51E-02
158GO:0006032: chitin catabolic process1.51E-02
159GO:0019538: protein metabolic process1.51E-02
160GO:0009688: abscisic acid biosynthetic process1.51E-02
161GO:0009407: toxin catabolic process1.60E-02
162GO:0019684: photosynthesis, light reaction1.67E-02
163GO:0009089: lysine biosynthetic process via diaminopimelate1.67E-02
164GO:0009682: induced systemic resistance1.67E-02
165GO:0052544: defense response by callose deposition in cell wall1.67E-02
166GO:1903507: negative regulation of nucleic acid-templated transcription1.67E-02
167GO:0006099: tricarboxylic acid cycle1.92E-02
168GO:0010102: lateral root morphogenesis2.02E-02
169GO:0006839: mitochondrial transport2.10E-02
170GO:0006897: endocytosis2.19E-02
171GO:0006631: fatty acid metabolic process2.19E-02
172GO:0002237: response to molecule of bacterial origin2.20E-02
173GO:0009414: response to water deprivation2.28E-02
174GO:0009408: response to heat2.33E-02
175GO:0009225: nucleotide-sugar metabolic process2.38E-02
176GO:0046688: response to copper ion2.38E-02
177GO:0090351: seedling development2.38E-02
178GO:0008152: metabolic process2.69E-02
179GO:0006855: drug transmembrane transport2.77E-02
180GO:2000377: regulation of reactive oxygen species metabolic process2.77E-02
181GO:0006825: copper ion transport2.98E-02
182GO:0051302: regulation of cell division2.98E-02
183GO:0006874: cellular calcium ion homeostasis2.98E-02
184GO:0009269: response to desiccation3.18E-02
185GO:0016998: cell wall macromolecule catabolic process3.18E-02
186GO:0016226: iron-sulfur cluster assembly3.40E-02
187GO:2000022: regulation of jasmonic acid mediated signaling pathway3.40E-02
188GO:0007005: mitochondrion organization3.40E-02
189GO:0031348: negative regulation of defense response3.40E-02
190GO:0009411: response to UV3.61E-02
191GO:0009625: response to insect3.61E-02
192GO:0006970: response to osmotic stress3.82E-02
193GO:0042127: regulation of cell proliferation3.83E-02
194GO:0009306: protein secretion3.83E-02
195GO:0009626: plant-type hypersensitive response4.02E-02
196GO:0009723: response to ethylene4.17E-02
197GO:0010118: stomatal movement4.29E-02
198GO:0000271: polysaccharide biosynthetic process4.29E-02
199GO:0000413: protein peptidyl-prolyl isomerization4.29E-02
200GO:0006468: protein phosphorylation4.52E-02
201GO:0006520: cellular amino acid metabolic process4.53E-02
202GO:0045489: pectin biosynthetic process4.53E-02
203GO:0009624: response to nematode4.54E-02
204GO:0006810: transport4.82E-02
RankGO TermAdjusted P value
1GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
2GO:0033759: flavone synthase activity0.00E+00
3GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
4GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
5GO:0102867: molybdenum cofactor sulfurtransferase activity0.00E+00
6GO:0004610: phosphoacetylglucosamine mutase activity0.00E+00
7GO:0050334: thiaminase activity0.00E+00
8GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
9GO:0005212: structural constituent of eye lens0.00E+00
10GO:0005509: calcium ion binding2.94E-04
11GO:0102391: decanoate--CoA ligase activity4.08E-04
12GO:0004656: procollagen-proline 4-dioxygenase activity4.08E-04
13GO:0016229: steroid dehydrogenase activity5.06E-04
14GO:2001227: quercitrin binding5.06E-04
15GO:0070401: NADP+ binding5.06E-04
16GO:2001147: camalexin binding5.06E-04
17GO:0009000: selenocysteine lyase activity5.06E-04
18GO:0015245: fatty acid transporter activity5.06E-04
19GO:0010285: L,L-diaminopimelate aminotransferase activity5.06E-04
20GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity5.06E-04
21GO:0004467: long-chain fatty acid-CoA ligase activity5.24E-04
22GO:0004033: aldo-keto reductase (NADP) activity6.54E-04
23GO:0003994: aconitate hydratase activity1.09E-03
24GO:0015152: glucose-6-phosphate transmembrane transporter activity1.09E-03
25GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity1.09E-03
26GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity1.09E-03
27GO:0032934: sterol binding1.09E-03
28GO:0015036: disulfide oxidoreductase activity1.09E-03
29GO:0050736: O-malonyltransferase activity1.09E-03
30GO:0048531: beta-1,3-galactosyltransferase activity1.09E-03
31GO:0010331: gibberellin binding1.09E-03
32GO:0047617: acyl-CoA hydrolase activity1.12E-03
33GO:0071917: triose-phosphate transmembrane transporter activity1.78E-03
34GO:0005457: GDP-fucose transmembrane transporter activity1.78E-03
35GO:0003979: UDP-glucose 6-dehydrogenase activity1.78E-03
36GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.78E-03
37GO:0004324: ferredoxin-NADP+ reductase activity1.78E-03
38GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.78E-03
39GO:0016531: copper chaperone activity1.78E-03
40GO:0032403: protein complex binding1.78E-03
41GO:0008375: acetylglucosaminyltransferase activity1.91E-03
42GO:0004806: triglyceride lipase activity2.04E-03
43GO:0030247: polysaccharide binding2.04E-03
44GO:0030552: cAMP binding2.49E-03
45GO:0030553: cGMP binding2.49E-03
46GO:0017077: oxidative phosphorylation uncoupler activity2.58E-03
47GO:0035529: NADH pyrophosphatase activity2.58E-03
48GO:0008106: alcohol dehydrogenase (NADP+) activity2.58E-03
49GO:0016758: transferase activity, transferring hexosyl groups2.82E-03
50GO:0031418: L-ascorbic acid binding3.08E-03
51GO:0001046: core promoter sequence-specific DNA binding3.08E-03
52GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.15E-03
53GO:0005216: ion channel activity3.40E-03
54GO:0030170: pyridoxal phosphate binding3.46E-03
55GO:0004834: tryptophan synthase activity3.48E-03
56GO:0050378: UDP-glucuronate 4-epimerase activity3.48E-03
57GO:0009916: alternative oxidase activity3.48E-03
58GO:0004930: G-protein coupled receptor activity3.48E-03
59GO:0015120: phosphoglycerate transmembrane transporter activity3.48E-03
60GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.33E-03
61GO:0030151: molybdenum ion binding4.46E-03
62GO:0018685: alkane 1-monooxygenase activity4.46E-03
63GO:0005496: steroid binding4.46E-03
64GO:0047631: ADP-ribose diphosphatase activity4.46E-03
65GO:0015297: antiporter activity4.49E-03
66GO:0004499: N,N-dimethylaniline monooxygenase activity4.86E-03
67GO:0000210: NAD+ diphosphatase activity5.53E-03
68GO:0008519: ammonium transmembrane transporter activity5.53E-03
69GO:0005249: voltage-gated potassium channel activity5.70E-03
70GO:0030551: cyclic nucleotide binding5.70E-03
71GO:0008194: UDP-glycosyltransferase activity5.72E-03
72GO:0050662: coenzyme binding6.61E-03
73GO:0008113: peptide-methionine (S)-S-oxide reductase activity6.67E-03
74GO:0015217: ADP transmembrane transporter activity6.67E-03
75GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.67E-03
76GO:0004144: diacylglycerol O-acyltransferase activity6.67E-03
77GO:0005347: ATP transmembrane transporter activity6.67E-03
78GO:0003978: UDP-glucose 4-epimerase activity6.67E-03
79GO:0043295: glutathione binding7.90E-03
80GO:0004620: phospholipase activity7.90E-03
81GO:0080043: quercetin 3-O-glucosyltransferase activity8.94E-03
82GO:0080044: quercetin 7-O-glucosyltransferase activity8.94E-03
83GO:0004714: transmembrane receptor protein tyrosine kinase activity9.20E-03
84GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity9.20E-03
85GO:0047893: flavonol 3-O-glucosyltransferase activity9.20E-03
86GO:0004034: aldose 1-epimerase activity9.20E-03
87GO:0052747: sinapyl alcohol dehydrogenase activity9.20E-03
88GO:0005544: calcium-dependent phospholipid binding9.20E-03
89GO:0008483: transaminase activity9.82E-03
90GO:0008142: oxysterol binding1.06E-02
91GO:0016757: transferase activity, transferring glycosyl groups1.10E-02
92GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.20E-02
93GO:0005516: calmodulin binding1.36E-02
94GO:0004568: chitinase activity1.51E-02
95GO:0005545: 1-phosphatidylinositol binding1.51E-02
96GO:0015020: glucuronosyltransferase activity1.51E-02
97GO:0004864: protein phosphatase inhibitor activity1.51E-02
98GO:0043565: sequence-specific DNA binding1.51E-02
99GO:0042803: protein homodimerization activity1.83E-02
100GO:0045551: cinnamyl-alcohol dehydrogenase activity1.84E-02
101GO:0016787: hydrolase activity1.89E-02
102GO:0004022: alcohol dehydrogenase (NAD) activity2.02E-02
103GO:0005315: inorganic phosphate transmembrane transporter activity2.02E-02
104GO:0050661: NADP binding2.10E-02
105GO:0051539: 4 iron, 4 sulfur cluster binding2.10E-02
106GO:0004364: glutathione transferase activity2.28E-02
107GO:0008061: chitin binding2.38E-02
108GO:0003712: transcription cofactor activity2.38E-02
109GO:0004970: ionotropic glutamate receptor activity2.38E-02
110GO:0005217: intracellular ligand-gated ion channel activity2.38E-02
111GO:0005198: structural molecule activity2.67E-02
112GO:0051536: iron-sulfur cluster binding2.77E-02
113GO:0003714: transcription corepressor activity2.77E-02
114GO:0051287: NAD binding2.87E-02
115GO:0035251: UDP-glucosyltransferase activity3.18E-02
116GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.40E-02
117GO:0008810: cellulase activity3.61E-02
118GO:0005102: receptor binding4.06E-02
119GO:0016874: ligase activity4.28E-02
120GO:0030276: clathrin binding4.53E-02
121GO:0005199: structural constituent of cell wall4.53E-02
122GO:0004497: monooxygenase activity4.54E-02
123GO:0016746: transferase activity, transferring acyl groups4.67E-02
124GO:0016853: isomerase activity4.76E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane3.22E-09
2GO:0005794: Golgi apparatus1.88E-06
3GO:0005886: plasma membrane9.79E-05
4GO:0005743: mitochondrial inner membrane4.61E-04
5GO:0045252: oxoglutarate dehydrogenase complex5.06E-04
6GO:0005802: trans-Golgi network6.08E-04
7GO:0005768: endosome8.52E-04
8GO:0005901: caveola1.09E-03
9GO:0031314: extrinsic component of mitochondrial inner membrane1.09E-03
10GO:0017119: Golgi transport complex1.31E-03
11GO:0009530: primary cell wall1.78E-03
12GO:0030658: transport vesicle membrane2.58E-03
13GO:0005741: mitochondrial outer membrane3.74E-03
14GO:0000813: ESCRT I complex4.46E-03
15GO:0000164: protein phosphatase type 1 complex4.46E-03
16GO:0031965: nuclear membrane7.10E-03
17GO:0005777: peroxisome8.02E-03
18GO:0005789: endoplasmic reticulum membrane8.68E-03
19GO:0005779: integral component of peroxisomal membrane1.06E-02
20GO:0005887: integral component of plasma membrane1.18E-02
21GO:0030665: clathrin-coated vesicle membrane1.35E-02
22GO:0005795: Golgi stack2.38E-02
23GO:0043231: intracellular membrane-bounded organelle2.69E-02
24GO:0005758: mitochondrial intermembrane space2.77E-02
25GO:0046658: anchored component of plasma membrane2.87E-02
26GO:0070469: respiratory chain2.98E-02
27GO:0009506: plasmodesma3.18E-02
28GO:0005905: clathrin-coated pit3.18E-02
29GO:0005783: endoplasmic reticulum3.48E-02
30GO:0031225: anchored component of membrane3.94E-02
31GO:0030136: clathrin-coated vesicle4.06E-02
32GO:0000139: Golgi membrane4.17E-02
33GO:0009706: chloroplast inner membrane4.54E-02
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Gene type



Gene DE type