Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G06880

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046486: glycerolipid metabolic process0.00E+00
2GO:0045014: negative regulation of transcription by glucose0.00E+00
3GO:0070455: positive regulation of heme biosynthetic process0.00E+00
4GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA0.00E+00
5GO:0051013: microtubule severing1.04E-04
6GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic1.04E-04
7GO:0010495: long-distance posttranscriptional gene silencing1.04E-04
8GO:0006650: glycerophospholipid metabolic process2.44E-04
9GO:0009825: multidimensional cell growth2.74E-04
10GO:0006518: peptide metabolic process4.05E-04
11GO:0042780: tRNA 3'-end processing4.05E-04
12GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic4.05E-04
13GO:0046168: glycerol-3-phosphate catabolic process4.05E-04
14GO:0070919: production of siRNA involved in chromatin silencing by small RNA4.05E-04
15GO:0033014: tetrapyrrole biosynthetic process5.82E-04
16GO:0045017: glycerolipid biosynthetic process5.82E-04
17GO:0051513: regulation of monopolar cell growth5.82E-04
18GO:0007276: gamete generation5.82E-04
19GO:0006072: glycerol-3-phosphate metabolic process5.82E-04
20GO:0051016: barbed-end actin filament capping5.82E-04
21GO:0009956: radial pattern formation7.73E-04
22GO:0060918: auxin transport1.19E-03
23GO:0016458: gene silencing1.19E-03
24GO:0015995: chlorophyll biosynthetic process1.36E-03
25GO:0009942: longitudinal axis specification1.43E-03
26GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.43E-03
27GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.67E-03
28GO:0009610: response to symbiotic fungus1.67E-03
29GO:0051693: actin filament capping1.67E-03
30GO:0009416: response to light stimulus1.75E-03
31GO:0010492: maintenance of shoot apical meristem identity1.93E-03
32GO:0048564: photosystem I assembly1.93E-03
33GO:0045292: mRNA cis splicing, via spliceosome1.93E-03
34GO:0007186: G-protein coupled receptor signaling pathway2.21E-03
35GO:0006783: heme biosynthetic process2.49E-03
36GO:0000373: Group II intron splicing2.49E-03
37GO:0048589: developmental growth2.49E-03
38GO:0000902: cell morphogenesis2.49E-03
39GO:0030422: production of siRNA involved in RNA interference3.10E-03
40GO:0048829: root cap development3.10E-03
41GO:0016441: posttranscriptional gene silencing3.10E-03
42GO:0006782: protoporphyrinogen IX biosynthetic process3.10E-03
43GO:0009089: lysine biosynthetic process via diaminopimelate3.42E-03
44GO:0016485: protein processing3.42E-03
45GO:0010152: pollen maturation3.75E-03
46GO:0030036: actin cytoskeleton organization4.09E-03
47GO:0009718: anthocyanin-containing compound biosynthetic process4.09E-03
48GO:0009767: photosynthetic electron transport chain4.09E-03
49GO:0007015: actin filament organization4.44E-03
50GO:0009887: animal organ morphogenesis4.44E-03
51GO:0010540: basipetal auxin transport4.44E-03
52GO:0009933: meristem structural organization4.44E-03
53GO:0080188: RNA-directed DNA methylation4.80E-03
54GO:0051726: regulation of cell cycle4.91E-03
55GO:0080147: root hair cell development5.56E-03
56GO:0006874: cellular calcium ion homeostasis5.95E-03
57GO:0043622: cortical microtubule organization5.95E-03
58GO:0003333: amino acid transmembrane transport6.35E-03
59GO:0006306: DNA methylation6.35E-03
60GO:0009734: auxin-activated signaling pathway6.44E-03
61GO:0010091: trichome branching7.61E-03
62GO:0042127: regulation of cell proliferation7.61E-03
63GO:0048443: stamen development7.61E-03
64GO:0009451: RNA modification8.19E-03
65GO:0006508: proteolysis8.37E-03
66GO:0000271: polysaccharide biosynthetic process8.49E-03
67GO:0000226: microtubule cytoskeleton organization8.49E-03
68GO:0045489: pectin biosynthetic process8.95E-03
69GO:0010305: leaf vascular tissue pattern formation8.95E-03
70GO:0051301: cell division9.64E-03
71GO:0008654: phospholipid biosynthetic process9.90E-03
72GO:0009791: post-embryonic development9.90E-03
73GO:0010583: response to cyclopentenone1.09E-02
74GO:0031047: gene silencing by RNA1.09E-02
75GO:0019760: glucosinolate metabolic process1.19E-02
76GO:0009658: chloroplast organization1.24E-02
77GO:0007049: cell cycle1.39E-02
78GO:0009627: systemic acquired resistance1.45E-02
79GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.59E-02
80GO:0009832: plant-type cell wall biogenesis1.68E-02
81GO:0006811: ion transport1.74E-02
82GO:0006865: amino acid transport1.86E-02
83GO:0016051: carbohydrate biosynthetic process1.92E-02
84GO:0030001: metal ion transport2.11E-02
85GO:0006839: mitochondrial transport2.11E-02
86GO:0006631: fatty acid metabolic process2.17E-02
87GO:0009926: auxin polar transport2.30E-02
88GO:0051707: response to other organism2.30E-02
89GO:0009965: leaf morphogenesis2.50E-02
90GO:0016567: protein ubiquitination2.71E-02
91GO:0006364: rRNA processing2.84E-02
92GO:0051603: proteolysis involved in cellular protein catabolic process2.91E-02
93GO:0048367: shoot system development3.28E-02
94GO:0048316: seed development3.28E-02
95GO:0006468: protein phosphorylation4.01E-02
RankGO TermAdjusted P value
1GO:0098519: nucleotide phosphatase activity, acting on free nucleotides0.00E+00
2GO:0008568: microtubule-severing ATPase activity1.04E-04
3GO:0008836: diaminopimelate decarboxylase activity1.04E-04
4GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity2.44E-04
5GO:0004109: coproporphyrinogen oxidase activity2.44E-04
6GO:0008805: carbon-monoxide oxygenase activity2.44E-04
7GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity4.05E-04
8GO:0042781: 3'-tRNA processing endoribonuclease activity4.05E-04
9GO:0010011: auxin binding7.73E-04
10GO:0010328: auxin influx transmembrane transporter activity7.73E-04
11GO:0043495: protein anchor7.73E-04
12GO:0004930: G-protein coupled receptor activity7.73E-04
13GO:0003968: RNA-directed 5'-3' RNA polymerase activity1.19E-03
14GO:0004222: metalloendopeptidase activity1.66E-03
15GO:0004970: ionotropic glutamate receptor activity4.80E-03
16GO:0005217: intracellular ligand-gated ion channel activity4.80E-03
17GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity6.76E-03
18GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity8.95E-03
19GO:0001085: RNA polymerase II transcription factor binding8.95E-03
20GO:0010181: FMN binding9.42E-03
21GO:0019901: protein kinase binding9.90E-03
22GO:0051015: actin filament binding1.14E-02
23GO:0008237: metallopeptidase activity1.24E-02
24GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.74E-02
25GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.80E-02
26GO:0004871: signal transducer activity1.93E-02
27GO:0004712: protein serine/threonine/tyrosine kinase activity2.04E-02
28GO:0004185: serine-type carboxypeptidase activity2.30E-02
29GO:0004519: endonuclease activity2.48E-02
30GO:0015293: symporter activity2.50E-02
31GO:0051287: NAD binding2.64E-02
32GO:0008234: cysteine-type peptidase activity3.06E-02
33GO:0015171: amino acid transmembrane transporter activity3.06E-02
34GO:0005515: protein binding3.07E-02
35GO:0004672: protein kinase activity3.41E-02
36GO:0003723: RNA binding4.07E-02
37GO:0016758: transferase activity, transferring hexosyl groups4.21E-02
38GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.70E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0008290: F-actin capping protein complex2.44E-04
3GO:0009331: glycerol-3-phosphate dehydrogenase complex5.82E-04
4GO:0042644: chloroplast nucleoid2.49E-03
5GO:0005884: actin filament3.42E-03
6GO:0009570: chloroplast stroma3.56E-03
7GO:0000419: DNA-directed RNA polymerase V complex5.18E-03
8GO:0043234: protein complex5.18E-03
9GO:0009507: chloroplast1.13E-02
10GO:0005667: transcription factor complex1.45E-02
11GO:0005874: microtubule1.49E-02
12GO:0009707: chloroplast outer membrane1.62E-02
13GO:0005654: nucleoplasm4.21E-02
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Gene type



Gene DE type





AT1G50890